Rh2BG262900

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000835
Physical Location & Seq
Forward (+)
28114538 .. 28114897
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG262900.1

Sequence Viewer

Length: 360 bp
ATGAGAGGTACACTGGAGAGGTTGGCAGACATGCACAAGTTGCCTGATGAAGAATTCCCTTTCAGGAAGCAGGCTACACTTCTTCTAGGATCCCTTGTCGAGGAGAAATGTGGGCTTTATGATGATATCAATATTAGGGCTGTCCTGCCTCAAGAACAACTCATGGCACTGCTTGCAGATTACAGGGGCCTTAAGTCCCAAAAAAAGTCAGAACTTTCTCATCGAAAACGGAAGATGGGGTTGAATATTGGGTCCCCCCCAGGAAGGTTGCCGTACGATTGTTCACCAGAGATGATGGATGAGGTAGCTAAAGCTGCGGTATCTGGTGCTGCGCAGATAGCAAAGAAGATTAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

119

Amino Acids

13.31

Weight (kDa)

9.14

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AciI CCGC 1 cut(s) 317
AclWI GGATC 2 cut(s) 84, 97
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 2 cut(s) 10, 275
AfiI CCNNNNNNNGG 2 cut(s) 100, 264
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 308, 314
AluI AGCT 2 cut(s) 308, 314
AlwI GGATC 2 cut(s) 84, 97
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 314, 329
ApoI RAATTY 1 cut(s) 53
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 187, 252
AsuHPI GGTGA 1 cut(s) 276
AvaII GGWCC 1 cut(s) 252
BamHI GGATCC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 301, 316
BccI CCATC 2 cut(s) 229, 289
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 315, 330
BlsI GCNGC 2 cut(s) 316, 331
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 187, 252
BmiI GGNNCC 4 cut(s) 91, 188, 253, 254
BmrFI CCNGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 264
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 100, 264
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 301, 316
BshFI GGCC 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 181, 238
BslI CCNNNNNNNGG 2 cut(s) 100, 264
BsmFI GGGAC 2 cut(s) 181, 238
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 89
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 91, 188, 253, 254
BspPI GGATC 2 cut(s) 84, 97
BspTI CTTAAG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 40, 173
BstC8I GCNNGC 2 cut(s) 72, 174
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 4 cut(s) 40, 173, 314, 338
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 301, 316
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 11, 167
Cac8I GCNNGC 2 cut(s) 72, 174
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 187, 252
Csp6I GTAC 2 cut(s) 9, 274
CviAII CATG 2 cut(s) 31, 163
CviJI RGCY 6 cut(s) 74, 115, 140, 189, 308, 314
CviKI_1 RGCY 6 cut(s) 74, 115, 140, 189, 308, 314
CviQI GTAC 2 cut(s) 9, 274
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO109I RGGNCCY 2 cut(s) 187, 252
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 127
FaeI CATG 2 cut(s) 34, 166
FaiI YATR 3 cut(s) 32, 120, 164
FaqI GGGAC 2 cut(s) 181, 238
FatI CATG 2 cut(s) 30, 162
Fnu4HI GCNGC 2 cut(s) 315, 330
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 315, 330
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 315, 330
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 34, 166
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 11, 284
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 64, 152
Hpy8I GTNNAC 2 cut(s) 11, 284
HpyAV CCTTC 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 34, 176
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 173, 314, 338
Hsp92II CATG 2 cut(s) 34, 166
HspAI GCGC 1 cut(s) 332
KflI GGGWCCC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 9 cut(s) 49, 56, 57, 158, 169, 246, 273, 300, 309
Lsp1109I GCAGC 2 cut(s) 301, 316
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 4 cut(s) 62, 74, 244, 358
MflI RGATCY 1 cut(s) 89
MluCI AATT 1 cut(s) 53
MnlI CCTC 4 cut(s) 12, 94, 159, 295
MseI TTAA 2 cut(s) 192, 351
MspCI CTTAAG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 4 cut(s) 40, 173, 314, 338
NdeII GATC 1 cut(s) 89
NlaIII CATG 2 cut(s) 34, 166
NlaIV GGNNCC 4 cut(s) 91, 188, 253, 254
NsbI TGCGCA 1 cut(s) 333
NspI RCATGY 1 cut(s) 34
Pfl23II CGTACG 1 cut(s) 273
PkrI GCNGC 2 cut(s) 316, 331
PpuMI RGGWCCY 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspLI CGTACG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 91, 188, 253, 254
PspPI GGNCC 2 cut(s) 187, 252
PspPPI RGGWCCY 1 cut(s) 252
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 2 cut(s) 10, 275
RsaNI GTAC 2 cut(s) 9, 274
SaqAI TTAA 2 cut(s) 192, 351
SatI GCNGC 2 cut(s) 315, 330
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 2 cut(s) 187, 252
ScrFI CCNGG 1 cut(s) 261
SetI ASST 6 cut(s) 10, 23, 269, 306, 310, 316
SinI GGWCC 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 150, 191
SmoI CTYRAG 2 cut(s) 150, 191
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 317
SspI AATATT 2 cut(s) 133, 247
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 259
TaqI TCGA 2 cut(s) 99, 223
TasI AATT 1 cut(s) 53
Tru1I TTAA 2 cut(s) 192, 351
Tru9I TTAA 2 cut(s) 192, 351
TscAI CASTG 2 cut(s) 18, 174
TseI GCWGC 2 cut(s) 314, 329
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 2 cut(s) 18, 174
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 252
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.