Rh2BG262800

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000835
Physical Location & Seq
Forward (+)
28114236 .. 28114517
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG262800.1

Sequence Viewer

Length: 282 bp
ATGGGGAAACCTGTACAAGAGGATGACGGAAATATAGAAGAGGACATTGACGCAGCAGCAAACGCATTCAAGTGTGTCATTCATGCTTGCGTTGATCAAGGCTTGATCAAACAGGGAGTTGACCAGATCGGTGCCATTGCAAACAAGTATGAGCCTCAGCCTCAGGAGTCGACCATAATAGAAAAATTGTGTGCTACTATTCACAGCTTGCTTGGTTATCACCAGACTAATGCTCCTGCTCTCAGCATGGACCTTGCATTTGAAGTTGTTTCGATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

93

Amino Acids

10.01

Weight (kDa)

4.39

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 170
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 2 cut(s) 70, 263
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 53, 56
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 162
BanI GGYRCC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 65, 68
BclI TGATCA 2 cut(s) 94, 105
BisI GCNGC 2 cut(s) 54, 57
BlsI GCNGC 2 cut(s) 55, 58
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 135
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 170, 176, 256
BseXI GCAGC 2 cut(s) 65, 68
BshNI GGYRCC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 3 cut(s) 94, 105, 126
BspCNI CTCAG 3 cut(s) 169, 175, 255
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 13
BssMI GATC 3 cut(s) 94, 105, 126
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 88, 209
BstDEI CTNAG 3 cut(s) 156, 162, 242
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 3 cut(s) 97, 108, 129
BstMBI GATC 3 cut(s) 94, 105, 126
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 65, 68
Bsu36I CCTNAGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 88, 209
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 83, 247
CviJI RGCY 4 cut(s) 102, 154, 160, 207
CviKI_1 RGCY 4 cut(s) 102, 154, 160, 207
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 156, 162, 242
DpnI GATC 3 cut(s) 96, 107, 128
DpnII GATC 3 cut(s) 94, 105, 126
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 162
FaeI CATG 2 cut(s) 86, 250
FaiI YATR 5 cut(s) 35, 84, 150, 176, 248
FatI CATG 2 cut(s) 82, 246
FbaI TGATCA 2 cut(s) 94, 105
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 2 cut(s) 54, 57
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 54, 57
GluI GCNGC 2 cut(s) 54, 57
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 86, 250
HincII GTYRAC 2 cut(s) 121, 171
HindII GTYRAC 2 cut(s) 121, 171
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 121, 171
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 121, 171
HpyCH4V TGCA 2 cut(s) 140, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 156, 162, 242
Hsp92II CATG 2 cut(s) 86, 250
Ksp22I TGATCA 2 cut(s) 94, 105
Kzo9I GATC 3 cut(s) 94, 105, 126
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 24, 98, 137, 149, 236, 249
Lsp1109I GCAGC 2 cut(s) 65, 68
MalI GATC 3 cut(s) 96, 107, 128
MboI GATC 3 cut(s) 94, 105, 126
MboII GAAGA 1 cut(s) 50
MluCI AATT 2 cut(s) 185, 277
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 13, 34, 165, 171
MslI CAYNNNNRTG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 94, 105, 126
NlaIII CATG 2 cut(s) 86, 250
NlaIV GGNNCC 1 cut(s) 133
PctI GAATGC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 55, 58
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 70
SalI GTCGAC 1 cut(s) 169
SatI GCNGC 2 cut(s) 54, 57
Sau3AI GATC 3 cut(s) 94, 105, 126
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 176
SetI ASST 3 cut(s) 13, 209, 255
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 2 cut(s) 185, 277
TaqI TCGA 2 cut(s) 170, 272
TasI AATT 2 cut(s) 185, 277
TatI WGTACW 1 cut(s) 13
TseI GCWGC 2 cut(s) 53, 56
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.