Rmu_sc0003274.1_g000009

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003274.1
OG0000835
Physical Location & Seq
Forward (+)
22651 .. 24859
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003274.1_g000009.1.cds

Sequence Viewer

Length: 1509 bp
atgcgctgcaccgaccccaacaaccaagtcgacctcgaaatccgcaaactcatcgtcgtcatggcccagctcttccgagaccacaacgctgctcggacgccggaagcctacctgggctccacctgctcctctctcgacctcgtcgcctccaccttcgacgtttccaaccccaaacgtcccactgacgtcatcgacgcccacctcacagttctctccatcgtcgttccgaaagcccccgccagatttctgatgagcaatctccagttgatcgttgcttgtttgaggcgacctctccggtctaagtttccgtttccgttggacgccactacctgctgcttaggagttaaatgccttgctcacttgatcatcgttatcacaaaacgcttcaacagcttgtcagatgtttccgaactctacagcttcttactcaccttcgctagcatgactggcaccgtcctgacgtgttcgtgtcttcatcatgtactacaatattttcaaggcacgccgctgcttgaccctgcaagcaaacagattgctcacttgttgaataagtatcctccgccgcagcaagcaatccaaccagatatctgcaaggagagtcaagtagttcagcgcaaagtttttaaggccatgcttgctttggatgctgtggcagtacttcttcccgttatgtcaacccaggacagaactgctatgctcttctactataaaactctgtttgaactgcaacaaggctgtgttacatttcgcataataaatggtgtgcatagagtttgtctcaacccatctccagacgtttctcctgaattgttgctcgatctaatatgcttgatatgtcattctgtctccaaacatgagacacattatattgtgaaaaatatatctgaattgctgggtactggagtggcgaaagtctatttcttgaacattaaaatctgcgaaactaagctccctattgtgtttgatgcactcaacgttataatggtaaagcctgaagaagaagacatcgctcatgcagcacaggcatttaagtgtttaattcgtgcttgcattgatgaaagcttgatcaaacagggagttgaccgtattctgatgaatgcaaatatgtataacagaacaaactctgtgccaactataattgaaaaattgtgtgctactattcaaagcttatttggttattccgacactactatcctgtcccttgcttttgaaattgtctcaacaatgttggagaaactaggggtatactcttcttatttgatgaagggtacactgaagaccttagcagacatgcagaagttgcctgatcaagagttccgtttcaaggatgaggtcaagcttgttctacaagtggttgttgagaaatgggggtatgatgctataatggctgtcttgcctcagaacacatggaacttcttgcagagtcagattttcatcctgcaagaactcgcttatgttcatcatggttatgttttattaaaggattgtttcgcctccaacctcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

502

Amino Acids

56.4

Weight (kDa)

8.03

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
AarI CACCTGC 1 cut(s) 131
AatII GACGTC 1 cut(s) 189
Acc36I ACCTGC 2 cut(s) 131, 338
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 2 cut(s) 30, 1245
AciI CCGC 5 cut(s) 43, 237, 506, 560, 563
AclI AACGTT 1 cut(s) 975
AcuI CTGAAG 2 cut(s) 1014, 1295
AcyI GRCGYC 4 cut(s) 98, 186, 195, 321
AfaI GTAC 4 cut(s) 483, 657, 898, 1270
AfiI CCNNNNNNNGG 1 cut(s) 1324
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 9 cut(s) 388, 497, 547, 722, 925, 1142, 1163, 1211, 1324
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 2 cut(s) 111, 678
AluBI AGCT 7 cut(s) 70, 393, 420, 949, 1062, 1167, 1339
AluI AGCT 7 cut(s) 70, 393, 420, 949, 1062, 1167, 1339
Alw26I GTCTC 5 cut(s) 72, 782, 850, 851, 1222
AoxI GGCC 2 cut(s) 63, 627
ApeKI GCWGC 6 cut(s) 6, 89, 333, 508, 565, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AspLEI GCGC 2 cut(s) 6, 615
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 421
AsuNHI GCTAGC 1 cut(s) 437
BaeI ACNNNNGTAYC 2 cut(s) 888, 921
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 3 cut(s) 464, 1008, 1283
BbvI GCAGC 5 cut(s) 76, 320, 495, 577, 1028
BccI CCATC 2 cut(s) 224, 793
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 113, 680
BciVI GTATCC 1 cut(s) 564
BclI TGATCA 3 cut(s) 363, 1065, 1306
BcoDI GTCTC 5 cut(s) 72, 782, 850, 851, 1222
BfaI CTAG 2 cut(s) 438, 1238
BfmI CTRYAG 1 cut(s) 415
BfuAI ACCTGC 2 cut(s) 131, 338
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 8 cut(s) 7, 90, 334, 506, 509, 563, 566, 1017
BlsI GCNGC 8 cut(s) 8, 91, 335, 507, 510, 564, 567, 1018
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 113, 680
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 118, 451
BmrFI CCNGG 2 cut(s) 113, 680
BmsI GCATC 3 cut(s) 634, 955, 1366
BmtI GCTAGC 1 cut(s) 441
BpiI GAAGAC 3 cut(s) 464, 1008, 1283
BplI GAGNNNNNCTC 4 cut(s) 274, 306, 762, 794
BpmI CTGGAG 3 cut(s) 245, 774, 921
Bpu10I CCTNAGC 2 cut(s) 337, 1282
BsaBI GATNNNNATC 1 cut(s) 1433
BsaHI GRCGYC 4 cut(s) 98, 186, 195, 321
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 112, 678
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 1324
Bse1I ACTGG 3 cut(s) 262, 451, 904
Bse8I GATNNNNATC 1 cut(s) 1433
BseBI CCWGG 2 cut(s) 113, 680
BseDI CCNNGG 2 cut(s) 112, 678
BseGI GGATG 3 cut(s) 649, 1333, 1434
BseJI GATNNNNATC 1 cut(s) 1433
BseLI CCNNNNNNNGG 1 cut(s) 1324
BseMII CTCAG 1 cut(s) 1412
BseNI ACTGG 3 cut(s) 262, 451, 904
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 5 cut(s) 76, 320, 495, 577, 1028
BseYI CCCAGC 2 cut(s) 66, 892
BshFI GGCC 2 cut(s) 65, 629
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 101, 295
BslFI GGGAC 2 cut(s) 162, 1183
BslI CCNNNNNNNGG 1 cut(s) 1324
BsmAI GTCTC 5 cut(s) 72, 782, 850, 851, 1222
BsmFI GGGAC 2 cut(s) 162, 1183
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 2 cut(s) 65, 629
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 5 cut(s) 267, 363, 817, 1065, 1306
BspACI CCGC 5 cut(s) 43, 237, 506, 560, 563
BspANI GGCC 2 cut(s) 65, 629
BspCNI CTCAG 1 cut(s) 1411
BspLI GGNNCC 2 cut(s) 118, 451
BspMI ACCTGC 2 cut(s) 131, 338
BspOI GCTAGC 1 cut(s) 441
BspQI GCTCTTC 2 cut(s) 77, 704
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 3 cut(s) 262, 451, 904
BssECI CCNNGG 2 cut(s) 112, 678
BssMI GATC 5 cut(s) 267, 363, 817, 1065, 1306
BssNAI GTATAC 1 cut(s) 1246
BssNI GRCGYC 4 cut(s) 98, 186, 195, 321
Bst1107I GTATAC 1 cut(s) 1246
Bst2UI CCWGG 2 cut(s) 113, 680
Bst4CI ACNGT 3 cut(s) 208, 454, 1085
Bst6I CTCTTC 3 cut(s) 77, 704, 1255
BstACI GRCGYC 4 cut(s) 98, 186, 195, 321
BstAPI GCANNNNNTGC 1 cut(s) 1300
BstC8I GCNNGC 6 cut(s) 439, 503, 523, 570, 636, 1048
BstDEI CTNAG 5 cut(s) 300, 337, 945, 1282, 1398
BstF5I GGATG 3 cut(s) 649, 1333, 1434
BstHHI GCGC 2 cut(s) 6, 615
BstKTI GATC 5 cut(s) 270, 366, 820, 1068, 1309
BstMAI GTCTC 5 cut(s) 72, 782, 850, 851, 1222
BstMBI GATC 5 cut(s) 267, 363, 817, 1065, 1306
BstMWI GCNNNNNNNGC 9 cut(s) 123, 390, 447, 635, 644, 1016, 1022, 1300, 1385
BstNI CCWGG 2 cut(s) 113, 680
BstNSI RCATGY 1 cut(s) 1294
BstSCI CCNGG 2 cut(s) 111, 678
BstSFI CTRYAG 1 cut(s) 415
BstV1I GCAGC 5 cut(s) 76, 320, 495, 577, 1028
BstV2I GAAGAC 3 cut(s) 464, 1008, 1283
BstZ17I GTATAC 1 cut(s) 1246
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 2 cut(s) 65, 629
BtgZI GCGATG 1 cut(s) 991
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 3 cut(s) 649, 1333, 1434
BtsIMutI CAGTG 2 cut(s) 180, 1271
BveI ACCTGC 2 cut(s) 131, 338
Cac8I GCNNGC 6 cut(s) 439, 503, 523, 570, 636, 1048
CfoI GCGC 2 cut(s) 6, 615
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 3 cut(s) 106, 203, 329
Csp6I GTAC 4 cut(s) 482, 656, 897, 1269
CviAII CATG 9 cut(s) 61, 442, 479, 631, 854, 1013, 1291, 1407, 1463
CviQI GTAC 4 cut(s) 482, 656, 897, 1269
DdeI CTNAG 5 cut(s) 300, 337, 945, 1282, 1398
DpnI GATC 5 cut(s) 269, 365, 819, 1067, 1308
DpnII GATC 5 cut(s) 267, 363, 817, 1065, 1306
Eam1104I CTCTTC 3 cut(s) 77, 704, 1255
EarI CTCTTC 3 cut(s) 77, 704, 1255
EciI GGCGGA 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 1014, 1295
EcoRII CCWGG 2 cut(s) 111, 678
EcoRV GATATC 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 9 cut(s) 64, 445, 482, 634, 857, 1016, 1294, 1410, 1466
FaqI GGGAC 2 cut(s) 162, 1183
FatI CATG 9 cut(s) 60, 441, 478, 630, 853, 1012, 1290, 1406, 1462
FauI CCCGC 1 cut(s) 244
FbaI TGATCA 3 cut(s) 363, 1065, 1306
FblI GTMKAC 2 cut(s) 30, 1245
Fnu4HI GCNGC 8 cut(s) 7, 90, 334, 506, 509, 563, 566, 1017
FokI GGATG 3 cut(s) 656, 1340, 1421
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 8 cut(s) 7, 90, 334, 506, 509, 563, 566, 1017
FspBI CTAG 2 cut(s) 438, 1238
GlaI GCGC 2 cut(s) 5, 614
GluI GCNGC 8 cut(s) 7, 90, 334, 506, 509, 563, 566, 1017
GsaI CCCAGC 2 cut(s) 70, 896
GsuI CTGGAG 3 cut(s) 245, 774, 921
HaeIII GGCC 2 cut(s) 65, 629
HapII CCGG 2 cut(s) 101, 295
HgaI GACGC 3 cut(s) 106, 203, 329
HhaI GCGC 2 cut(s) 6, 615
Hin1I GRCGYC 4 cut(s) 98, 186, 195, 321
Hin1II CATG 9 cut(s) 64, 445, 482, 634, 857, 1016, 1294, 1410, 1466
Hin6I GCGC 2 cut(s) 4, 613
HinP1I GCGC 2 cut(s) 4, 613
HincII GTYRAC 3 cut(s) 31, 675, 1081
HindII GTYRAC 3 cut(s) 31, 675, 1081
HindIII AAGCTT 3 cut(s) 1060, 1165, 1337
HinfI GANTC 2 cut(s) 598, 1423
HpaII CCGG 2 cut(s) 101, 295
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 5 cut(s) 31, 675, 1081, 1246, 1271
Hpy188III TCNNGA 6 cut(s) 134, 457, 791, 803, 922, 1310
Hpy8I GTNNAC 5 cut(s) 31, 675, 1081, 1246, 1271
Hpy99I CGWCG 5 cut(s) 59, 146, 161, 197, 224
HpyAV CCTTC 3 cut(s) 163, 442, 1258
HpyCH4III ACNGT 3 cut(s) 208, 454, 1085
HpyCH4IV ACGT 6 cut(s) 159, 175, 186, 461, 795, 975
HpyF10VI GCNNNNNNNGC 9 cut(s) 123, 390, 447, 635, 644, 1016, 1022, 1300, 1385
HpyF3I CTNAG 5 cut(s) 300, 337, 945, 1282, 1398
HpySE526I ACGT 6 cut(s) 159, 175, 186, 461, 795, 975
Hsp92I GRCGYC 4 cut(s) 98, 186, 195, 321
Hsp92II CATG 9 cut(s) 64, 445, 482, 634, 857, 1016, 1294, 1410, 1466
HspAI GCGC 2 cut(s) 4, 613
Ksp22I TGATCA 3 cut(s) 363, 1065, 1306
Kzo9I GATC 5 cut(s) 267, 363, 817, 1065, 1306
LguI GCTCTTC 2 cut(s) 77, 704
LmnI GCTCC 3 cut(s) 122, 131, 954
Lsp1109I GCAGC 5 cut(s) 76, 320, 495, 577, 1028
LweI GCATC 3 cut(s) 634, 955, 1366
MaeI CTAG 2 cut(s) 438, 1238
MaeII ACGT 6 cut(s) 159, 175, 186, 461, 795, 975
MaeIII GTNAC 1 cut(s) 739
MalI GATC 5 cut(s) 269, 365, 819, 1067, 1308
MboI GATC 5 cut(s) 267, 363, 817, 1065, 1306
MboII GAAGA 9 cut(s) 64, 464, 653, 691, 1007, 1010, 1013, 1242, 1288
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 6 cut(s) 806, 887, 1038, 1137, 1145, 1212
MlyI GAGTC 2 cut(s) 607, 1432
MmeI TCCRAC 5 cut(s) 189, 297, 601, 1206, 1209
MseI TTAA 6 cut(s) 345, 624, 930, 1029, 1037, 1478
MslI CAYNNNNRTG 2 cut(s) 1030, 1467
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 2 cut(s) 101, 295
MspR9I CCNGG 2 cut(s) 113, 680
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 2 cut(s) 113, 680
MwoI GCNNNNNNNGC 9 cut(s) 123, 390, 447, 635, 644, 1016, 1022, 1300, 1385
NdeII GATC 5 cut(s) 267, 363, 817, 1065, 1306
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 9 cut(s) 64, 445, 482, 634, 857, 1016, 1294, 1410, 1466
NlaIV GGNNCC 2 cut(s) 118, 451
NspI RCATGY 1 cut(s) 1294
PaqCI CACCTGC 1 cut(s) 131
PciSI GCTCTTC 2 cut(s) 77, 704
PctI GAATGC 1 cut(s) 1102
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 8 cut(s) 8, 91, 335, 507, 510, 564, 567, 1018
PleI GAGTC 2 cut(s) 606, 1431
PpsI GAGTC 2 cut(s) 606, 1431
PsiI TTATAA 1 cut(s) 980
Psp1406I AACGTT 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 111, 678
PspFI CCCAGC 2 cut(s) 66, 892
PspGI CCWGG 2 cut(s) 111, 678
PspN4I GGNNCC 2 cut(s) 118, 451
PspPI GGNCC 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 4 cut(s) 483, 657, 898, 1270
RsaNI GTAC 4 cut(s) 482, 656, 897, 1269
RseI CAYNNNNRTG 2 cut(s) 1030, 1467
SalI GTCGAC 1 cut(s) 29
SapI GCTCTTC 2 cut(s) 77, 704
SaqAI TTAA 6 cut(s) 345, 624, 930, 1029, 1037, 1478
SatI GCNGC 8 cut(s) 7, 90, 334, 506, 509, 563, 566, 1017
Sau3AI GATC 5 cut(s) 267, 363, 817, 1065, 1306
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 2 cut(s) 607, 1432
ScrFI CCNGG 2 cut(s) 113, 680
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 3 cut(s) 634, 955, 1366
SfcI CTRYAG 1 cut(s) 415
SmiMI CAYNNNNRTG 2 cut(s) 1030, 1467
Sse9I AATT 6 cut(s) 806, 887, 1038, 1137, 1145, 1212
SsiI CCGC 5 cut(s) 43, 237, 506, 560, 563
SspI AATATT 1 cut(s) 491
SspMI CTAG 2 cut(s) 438, 1238
StyD4I CCNGG 2 cut(s) 111, 678
TaaI ACNGT 3 cut(s) 208, 454, 1085
TaiI ACGT 6 cut(s) 162, 178, 189, 464, 798, 978
TaqI TCGA 6 cut(s) 30, 36, 135, 156, 192, 816
TasI AATT 6 cut(s) 806, 887, 1038, 1137, 1145, 1212
TatI WGTACW 2 cut(s) 481, 655
TauI GCSGC 2 cut(s) 508, 565
Tru1I TTAA 6 cut(s) 345, 624, 930, 1029, 1037, 1478
Tru9I TTAA 6 cut(s) 345, 624, 930, 1029, 1037, 1478
TscAI CASTG 2 cut(s) 187, 1278
TseI GCWGC 6 cut(s) 6, 89, 333, 508, 565, 1016
TspDTI ATGAA 6 cut(s) 464, 1071, 1109, 1277, 1423, 1448
TspGWI ACGGA 3 cut(s) 297, 303, 1307
TspRI CASTG 2 cut(s) 187, 1278
Tth111I GACNNNGTC 1 cut(s) 140
XceI RCATGY 1 cut(s) 1294
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmiI GTMKAC 2 cut(s) 30, 1245
XspI CTAG 2 cut(s) 438, 1238
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.