Rorug02G0048300

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000835
Physical Location & Seq
Forward (+)
3713748 .. 3714924
1177 bp
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UTR
Exon/CDS
Intron
Rorug02G0048300.1

Sequence Viewer

Length: 879 bp
ATGGAAAACCGCTTCAAGCTAAAGCTCTCCCGCATGTTCCACAAGGCCTCACTCGGCACCTGCCGCTCACGCAGCATCTCTGACGTGATCCAAAAAACTGATCACTCTCTTCCCAAGCCACCTCCTCCTGCTGCTAAGCCTTTCCGGTCCATTTGCAGACCTAAATGCTCCGACGACCCGAAACAGCAACCCATCAACCACAGCTGCGTCATTTCCAGATCCAACACAGACCTCATGCTCCCCAGACGCAAGATTTTCGAACGTCGCTCCCCATTTGTGAAGCCTGAAATCCCTCCCAATTCTCTGTTCTCGCATTCAAATCCATTCTACGAAGTTCATGAAAGCCATAGCTTTCGACAGAGAAAGAAGAGAGCGACCAAGAAGAAGAAGAAGAAGAAGACGAGGAGTAAGAAAACCGATCTTTTCGCAATCAGCTCTTCTTCTTTGGATAGTAATCACTTTTACAATGGGTGGTGGTCTAGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCGAACACTCACACTTCCGATTCGTCCGGGTCTCGCCGGCGACTGCATTCGAGTTCTCAGCGGAAAGGTCAGAGCTTTGGCCGGAGAAGAGGGGGTTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTTGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGACCATCTCTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTTTTCACTGAGATTTGGGAGGCTCTGTTCTCCAACTTGGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

292

Amino Acids

33.65

Weight (kDa)

9.99

Isoelectric Point (pI)

66.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 230 - 287 9.1e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 4 cut(s) 10, 31, 64, 589
AclWI GGATC 3 cut(s) 82, 213, 689
AcoI YGGCCR 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 812
AfiI CCNNNNNNNGG 2 cut(s) 650, 870
AgsI TTSAA 2 cut(s) 16, 318
AjiI CACGTC 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 842, 874
AluBI AGCT 8 cut(s) 19, 25, 204, 351, 435, 603, 669, 796
AluI AGCT 8 cut(s) 19, 25, 204, 351, 435, 603, 669, 796
Alw26I GTCTC 2 cut(s) 503, 564
AlwI GGATC 3 cut(s) 82, 213, 689
AoxI GGCC 2 cut(s) 45, 607
ApeKI GCWGC 3 cut(s) 72, 131, 204
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 691
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 404, 510
BbvI GCAGC 3 cut(s) 84, 118, 191
BccI CCATC 2 cut(s) 200, 780
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 503, 564
BfaI CTAG 2 cut(s) 480, 690
BfuAI ACCTGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 763
BisI GCNGC 4 cut(s) 64, 73, 132, 205
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 4 cut(s) 65, 74, 133, 206
Bme1390I CCNGG 1 cut(s) 556
Bme18I GGWCC 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 84, 630
BpiI GAAGAC 2 cut(s) 404, 510
Bpu1102I GCTNAGC 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 556
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 564
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 650, 870
Bse118I RCCGGY 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 644
Bse8I GATNNNNATC 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 650, 870
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 3 cut(s) 599, 618, 831
BseRI GAGGAG 2 cut(s) 114, 418
BseXI GCAGC 3 cut(s) 84, 118, 191
BshFI GGCC 2 cut(s) 47, 609
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 4 cut(s) 145, 555, 565, 610
BslI CCNNNNNNNGG 2 cut(s) 650, 870
BsmAI GTCTC 2 cut(s) 503, 564
BsmI GAATGC 2 cut(s) 313, 574
BsnI GGCC 2 cut(s) 47, 609
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 258
Bsp143I GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 4 cut(s) 10, 31, 64, 589
BspANI GGCC 2 cut(s) 47, 609
BspCNI CTCAG 3 cut(s) 598, 619, 832
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 3 cut(s) 82, 213, 689
BspQI GCTCTTC 1 cut(s) 442
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 564
BssAI RCCGGY 1 cut(s) 564
BssMI GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
Bst6I CTCTTC 5 cut(s) 114, 362, 442, 489, 610
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 4 cut(s) 135, 585, 627, 840
BstKTI GATC 7 cut(s) 90, 103, 221, 421, 697, 735, 766
BstMAI GTCTC 2 cut(s) 503, 564
BstMBI GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
BstMWI GCNNNNNNNGC 4 cut(s) 63, 69, 72, 802
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 554
BstV1I GCAGC 3 cut(s) 84, 118, 191
BstV2I GAAGAC 2 cut(s) 404, 510
BstX2I RGATCY 2 cut(s) 218, 763
BstYI RGATCY 2 cut(s) 218, 763
BsuRI GGCC 2 cut(s) 47, 609
BtrI CACGTC 1 cut(s) 85
BtsI GCAGTG 2 cut(s) 490, 788
BtsIMutI CAGTG 3 cut(s) 490, 788, 837
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 566
CciI TCATGA 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 147
CseI GACGC 2 cut(s) 196, 255
CviAII CATG 3 cut(s) 34, 235, 338
DdeI CTNAG 4 cut(s) 135, 585, 627, 840
DpnI GATC 7 cut(s) 89, 102, 220, 420, 696, 734, 765
DpnII GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 5 cut(s) 114, 362, 442, 489, 610
EarI CTCTTC 5 cut(s) 114, 362, 442, 489, 610
Eco147I AGGCCT 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 812
FaeI CATG 3 cut(s) 37, 238, 341
FaiI YATR 4 cut(s) 35, 236, 339, 348
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FatI CATG 3 cut(s) 33, 234, 337
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 64, 73, 132, 205
Fsp4HI GCNGC 4 cut(s) 64, 73, 132, 205
FspBI CTAG 2 cut(s) 480, 690
GluI GCNGC 4 cut(s) 64, 73, 132, 205
HaeIII GGCC 2 cut(s) 47, 609
HapII CCGG 4 cut(s) 145, 555, 565, 610
HgaI GACGC 2 cut(s) 196, 255
Hin1II CATG 3 cut(s) 37, 238, 341
HinfI GANTC 1 cut(s) 548
HpaII CCGG 4 cut(s) 145, 555, 565, 610
HphI GGTGA 1 cut(s) 691
Hpy188I TCNGA 8 cut(s) 82, 172, 547, 600, 628, 639, 713, 792
Hpy188III TCNNGA 3 cut(s) 216, 338, 767
Hpy99I CGWCG 2 cut(s) 176, 267
HpyAV CCTTC 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 84, 262
HpyCH4V TGCA 4 cut(s) 156, 574, 649, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 69, 72, 802
HpyF3I CTNAG 4 cut(s) 135, 585, 627, 840
HpySE526I ACGT 2 cut(s) 84, 262
Hsp92II CATG 3 cut(s) 37, 238, 341
KroI GCCGGC 1 cut(s) 564
KroNI GCCGGC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 3 cut(s) 173, 243, 272
Lsp1109I GCAGC 3 cut(s) 84, 118, 191
LweI GCATC 2 cut(s) 84, 630
MaeI CTAG 2 cut(s) 480, 690
MaeII ACGT 2 cut(s) 84, 262
MalI GATC 7 cut(s) 89, 102, 220, 420, 696, 734, 765
MbiI CCGCTC 1 cut(s) 66
MboI GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
MflI RGATCY 2 cut(s) 218, 763
MluCI AATT 1 cut(s) 298
MmeI TCCRAC 2 cut(s) 195, 246
MreI CGCCGGCG 1 cut(s) 564
MroNI GCCGGC 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 204, 589
MspI CCGG 4 cut(s) 145, 555, 565, 610
MspR9I CCNGG 1 cut(s) 556
Mva1269I GAATGC 2 cut(s) 313, 574
MwoI GCNNNNNNNGC 4 cut(s) 63, 69, 72, 802
NaeI GCCGGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 556
NdeII GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
NgoMIV GCCGGC 1 cut(s) 564
NlaIII CATG 3 cut(s) 37, 238, 341
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 33
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 1 cut(s) 258
PagI TCATGA 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 442
PctI GAATGC 2 cut(s) 313, 574
PdiI GCCGGC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 4 cut(s) 65, 74, 133, 206
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 2 cut(s) 218, 763
PvuII CAGCTG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 442
SatI GCNGC 4 cut(s) 64, 73, 132, 205
Sau3AI GATC 7 cut(s) 87, 100, 218, 418, 694, 732, 763
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 556
SfaNI GCATC 2 cut(s) 84, 630
SfuI TTCGAA 1 cut(s) 258
SgrAI CRCCGGYG 1 cut(s) 564
SinI GGWCC 1 cut(s) 147
Sse9I AATT 1 cut(s) 298
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 4 cut(s) 10, 31, 64, 589
SspMI CTAG 2 cut(s) 480, 690
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 554
TaiI ACGT 2 cut(s) 87, 265
TaqI TCGA 4 cut(s) 258, 355, 530, 578
TasI AATT 1 cut(s) 298
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 548
TscAI CASTG 3 cut(s) 490, 788, 844
TseI GCWGC 3 cut(s) 72, 131, 204
TspDTI ATGAA 3 cut(s) 326, 354, 507
TspRI CASTG 3 cut(s) 490, 788, 844
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 1 cut(s) 37
XspI CTAG 2 cut(s) 480, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.