Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8218578.1

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Reverse (-)

68 .. 737

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8218578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 670 bp

acctgtacaagaggatgacggtaatatagaagaggacattgacgcagcagcaaacgcattcaagtgtgtcattcatgcttgtgttgatcaaggcttgatcaaacagggagttgacaagatcggtgccattgcaaacaagtatgagcctcagcctcaggagtcgaccataatagaaaaattgtgtgctactattcactgcagcttgcttggttatcaccagactaatgctcctgctctcagcatggaccttgcatttgaagttgtttcgacaatgttcaataaattaggggcatatgcttcttatttcatgagaggtacactggagaggttggcagacatgcacaagttgcttgatgaagaattccctttcaggaagcaggctacacttcttctagaatcccttgtcgaggagaaatgtgggcttcatgatgatatcaatattagggttgtcctgcctcaagaacaactcatggcactgcttgcagattacagaggccttaagtcccaaaaaaagtcagaactttctcatcgaaaacggaagatggggttgaatattgggtccccccccccaggaaggttgccgtacgattgttcaccagagatgatggctgaggcagctaaagctgcggtatctggtgctgcgcagatagcaaagaagattaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

222

Amino Acids

24.47

Weight (kDa)

5.91

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	360
AfaI	GTAC	3 cut(s)	7, 317, 585
AfiI	CCNNNNNNNGG	3 cut(s)	407, 570, 574
AflII	CTTAAG	1 cut(s)	498
AgsI	TTSAA	4 cut(s)	62, 258, 278, 551
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	202, 618, 624
AluI	AGCT	3 cut(s)	202, 618, 624
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	6 cut(s)	45, 48, 199, 615, 624, 639
ApoI	RAATTY	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	2 cut(s)	245, 559
AsuHPI	GGTGA	2 cut(s)	207, 586
AvaII	GGWCC	2 cut(s)	245, 559
AxyI	CCTNAGG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	123
BbvCI	CCTCAGC	2 cut(s)	148, 610
BbvI	GCAGC	6 cut(s)	57, 60, 211, 611, 626, 627
BccI	CCATC	2 cut(s)	536, 599
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	571
BclI	TGATCA	2 cut(s)	86, 97
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	498
BisI	GCNGC	6 cut(s)	46, 49, 200, 616, 625, 640
BlsI	GCNGC	6 cut(s)	47, 50, 201, 617, 626, 641
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	2 cut(s)	245, 559
BmgT120I	GGNCC	2 cut(s)	245, 559
BmiI	GGNNCC	3 cut(s)	125, 560, 561
BmrFI	CCNGG	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	2 cut(s)	148, 610
BpuEI	CTTGAG	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 570, 574
Bse1I	ACTGG	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	407, 570, 574
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	4 cut(s)	162, 168, 251, 601
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	6 cut(s)	57, 60, 211, 611, 626, 627
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	583
BslFI	GGGAC	2 cut(s)	488, 545
BslI	CCNNNNNNNGG	3 cut(s)	407, 570, 574
BsmFI	GGGAC	2 cut(s)	488, 545
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	86, 97, 118
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	4 cut(s)	161, 167, 250, 602
BspHI	TCATGA	2 cut(s)	307, 425
BspLI	GGNNCC	3 cut(s)	125, 560, 561
BspMAI	CTGCAG	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	86, 97, 118
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	498
BstAPI	GCANNNNNTGC	2 cut(s)	347, 480
BstAUI	TGTACA	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	204, 379, 481
BstDEI	CTNAG	4 cut(s)	148, 154, 237, 610
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	3 cut(s)	89, 100, 121
BstMBI	GATC	3 cut(s)	86, 97, 118
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 347, 480, 615, 621, 624, 648
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	6 cut(s)	57, 60, 211, 611, 626, 627
Bsu36I	CCTNAGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	2 cut(s)	194, 474
BtsIMutI	CAGTG	3 cut(s)	194, 318, 474
Cac8I	GCNNGC	3 cut(s)	204, 379, 481
CciI	TCATGA	2 cut(s)	307, 425
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	245, 559
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	6, 316, 584
CviAII	CATG	6 cut(s)	75, 242, 308, 338, 426, 470
CviQI	GTAC	3 cut(s)	6, 316, 584
DdeI	CTNAG	4 cut(s)	148, 154, 237, 610
DpnI	GATC	3 cut(s)	88, 99, 120
DpnII	GATC	3 cut(s)	86, 97, 118
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	245, 559
Eco81I	CCTNAGG	1 cut(s)	154
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	434
FaeI	CATG	6 cut(s)	78, 245, 311, 341, 429, 473
FaqI	GGGAC	2 cut(s)	488, 545
FatI	CATG	6 cut(s)	74, 241, 307, 337, 425, 469
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	2 cut(s)	86, 97
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	6 cut(s)	46, 49, 200, 616, 625, 640
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	6 cut(s)	46, 49, 200, 616, 625, 640
FspBI	CTAG	1 cut(s)	393
FspI	TGCGCA	1 cut(s)	643
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	6 cut(s)	46, 49, 200, 616, 625, 640
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	6 cut(s)	78, 245, 311, 341, 429, 473
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HincII	GTYRAC	2 cut(s)	113, 163
HindII	GTYRAC	2 cut(s)	113, 163
HinfI	GANTC	2 cut(s)	159, 396
HphI	GGTGA	2 cut(s)	207, 586
Hpy166II	GTNNAC	4 cut(s)	113, 163, 318, 594
Hpy188I	TCNGA	1 cut(s)	518
Hpy188III	TCNNGA	6 cut(s)	156, 308, 371, 393, 426, 459
Hpy8I	GTNNAC	4 cut(s)	113, 163, 318, 594
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	5 cut(s)	132, 199, 252, 341, 483
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 347, 480, 615, 621, 624, 648
HpyF3I	CTNAG	4 cut(s)	148, 154, 237, 610
Hsp92II	CATG	6 cut(s)	78, 245, 311, 341, 429, 473
HspAI	GCGC	1 cut(s)	642
KflI	GGGWCCC	1 cut(s)	559
Ksp22I	TGATCA	2 cut(s)	86, 97
Kzo9I	GATC	3 cut(s)	86, 97, 118
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	6 cut(s)	57, 60, 211, 611, 626, 627
MaeI	CTAG	1 cut(s)	393
MalI	GATC	3 cut(s)	88, 99, 120
MboI	GATC	3 cut(s)	86, 97, 118
MboII	GAAGA	5 cut(s)	42, 369, 381, 551, 668
MluCI	AATT	3 cut(s)	177, 282, 360
MlyI	GAGTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	499, 661
MslI	CAYNNNNRTG	2 cut(s)	62, 79
MspCI	CTTAAG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	7 cut(s)	54, 347, 480, 615, 621, 624, 648
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	3 cut(s)	86, 97, 118
NlaIII	CATG	6 cut(s)	78, 245, 311, 341, 429, 473
NlaIV	GGNNCC	3 cut(s)	125, 560, 561
NsbI	TGCGCA	1 cut(s)	643
NspI	RCATGY	1 cut(s)	341
PagI	TCATGA	2 cut(s)	307, 425
PceI	AGGCCT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	396
Pfl23II	CGTACG	1 cut(s)	583
PkrI	GCNGC	6 cut(s)	47, 50, 201, 617, 626, 641
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	559
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspLI	CGTACG	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	125, 560, 561
PspPI	GGNCC	2 cut(s)	245, 559
PspPPI	RGGWCCY	1 cut(s)	559
PstI	CTGCAG	1 cut(s)	201
RsaI	GTAC	3 cut(s)	7, 317, 585
RsaNI	GTAC	3 cut(s)	6, 316, 584
RseI	CAYNNNNRTG	2 cut(s)	62, 79
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	499, 661
SatI	GCNGC	6 cut(s)	46, 49, 200, 616, 625, 640
Sau3AI	GATC	3 cut(s)	86, 97, 118
Sau96I	GGNCC	2 cut(s)	245, 559
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	571
SetI	ASST	7 cut(s)	204, 250, 317, 330, 579, 620, 626
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	245, 559
SmiMI	CAYNNNNRTG	2 cut(s)	62, 79
SmlI	CTYRAG	2 cut(s)	457, 498
SmoI	CTYRAG	2 cut(s)	457, 498
Sse9I	AATT	3 cut(s)	177, 282, 360
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	627
SspI	AATATT	2 cut(s)	440, 554
SspMI	CTAG	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	4 cut(s)	162, 267, 406, 530
TasI	AATT	3 cut(s)	177, 282, 360
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	499, 661
Tru9I	TTAA	2 cut(s)	499, 661
TscAI	CASTG	3 cut(s)	201, 325, 481
TseI	GCWGC	6 cut(s)	45, 48, 199, 615, 624, 639
TspDTI	ATGAA	4 cut(s)	63, 296, 370, 414
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	3 cut(s)	201, 325, 481
Vha464I	CTTAAG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	245, 559
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.