Rh2CG256200

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000835
Physical Location & Seq
Reverse (-)
27330725 .. 27331415
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG256200.1

Sequence Viewer

Length: 375 bp
ATGAGGGGCACGCTGGAGAACTTGGCAGACATGCACAAGTTGCCTGATGAAGACTTCCCGTTTAGGAAGCAGGCCACTCTTCTTCTAGGATCGCTTGTCGAGGAGAAATGTGGGCTAAATGATGTTAATATTACTGCTGTCCTGCCTCAAGGACAACTCAGGGAACTGCTTGCAGATTCTAGGGGACTTAAAGGCATATCAAGGTTGGAACTTTCTCATCGAAAATGGAAGATGGGGTTAAATATTGAGCCCTTTCTAGGAAGGGACTGGTCAGAGGAGATGAGGGCTGAGGAAGCTACAATTACAGCCATATCTGGTGCAGCGCAAATGACAAAGATTCAAAGAAGATTAAACTCGATAACCAGGCTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

7.92

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 364
BfaI CTAG 3 cut(s) 86, 180, 257
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 172, 279
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 116, 290
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 2 cut(s) 198, 278
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 198, 278
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 11, 252
Bsp143I GATC 1 cut(s) 89
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 171, 280
BspPI GGATC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 272
BssMI GATC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 11, 72, 171
BstDEI CTNAG 2 cut(s) 158, 288
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 40, 293
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 74
Cac8I GCNNGC 3 cut(s) 11, 72, 171
CfoI GCGC 1 cut(s) 325
CviAII CATG 1 cut(s) 31
CviJI RGCY 7 cut(s) 74, 115, 250, 287, 296, 308, 367
CviKI_1 RGCY 7 cut(s) 74, 115, 250, 287, 296, 308, 367
DdeI CTNAG 2 cut(s) 158, 288
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 197, 311
FaqI GGGAC 2 cut(s) 198, 278
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 3 cut(s) 86, 180, 257
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 2 cut(s) 176, 337
Hpy188I TCNGA 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 34, 173, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 293
HpyF3I CTNAG 2 cut(s) 158, 288
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 7 cut(s) 56, 57, 145, 155, 253, 300, 349
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 3 cut(s) 86, 180, 257
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 5 cut(s) 62, 71, 74, 241, 357
MhlI GDGCHC 2 cut(s) 11, 252
MluCI AATT 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 94, 156, 268, 276, 283
MseI TTAA 5 cut(s) 126, 189, 239, 350, 373
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 40, 293
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 34
NspI RCATGY 1 cut(s) 34
PfeI GAWTC 2 cut(s) 176, 337
PkrI GCNGC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
SaqAI TTAA 5 cut(s) 126, 189, 239, 350, 373
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 2 cut(s) 11, 252
SetI ASST 2 cut(s) 206, 298
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 1 cut(s) 300
SspI AATATT 2 cut(s) 130, 244
SspMI CTAG 3 cut(s) 86, 180, 257
StyD4I CCNGG 1 cut(s) 362
TaqI TCGA 3 cut(s) 99, 220, 356
TasI AATT 1 cut(s) 300
TfiI GAWTC 2 cut(s) 176, 337
Tru1I TTAA 5 cut(s) 126, 189, 239, 350, 373
Tru9I TTAA 5 cut(s) 126, 189, 239, 350, 373
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 63
XceI RCATGY 1 cut(s) 34
XspI CTAG 3 cut(s) 86, 180, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.