Rh2BG260900

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000835
Physical Location & Seq
Forward (+)
27863826 .. 27869984
6159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG260900.1

Sequence Viewer

Length: 600 bp
ATGCCTACCAAGTTCAAGCTAGCCGTCCTCAACCATTTTAAGGCTATCTTGGAACTGATCTTGGAGCTGCAACTGCAAAGACCCCCAATTACGATACGCCTAGAATCGTGCCTCCAAAGAGTCTGCCTCCACCCATCTACAGATGTTCCACCACAGCTGTTGCTCGACCTCTTATGCTTGGTATCTAATTCTGTCTCTAGAAAAGTTCCGCACGCGCATGAGGGGGCAACCACGTCCTCATTGCTCAACAGTAGATTGGCAAAAGTTTATTCCTCCAACAGTGGAATCTGTGTGAGTAAACTCCCTCTTGTGTTTGATGCACTCAAAATTTTGATGGGAAAACCTGTACAAGAGGACGACGGCCATATAGAAGAGGATATTGACGCTGCAGCACACGCATTCAAGTGTCTTATTCATGCTTTCATTGATCAAGGCTTGATCGAACAGGAGCCAACTATAGTTGAAAAGCTGTGTTCTACTGTTCAAAGCTTACTTGGTTATCACAGCACAAATGCTCCTGCTCTGAGCATGGACCTTGCATTTGAAGTTGTTTCAACAATTTCAAAGCTGTACAATACTATGGCCTTACTAGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

6.04

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 215
AciI CCGC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 1 cut(s) 327
AfaI GTAC 2 cut(s) 348, 572
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 7 cut(s) 16, 403, 464, 485, 545, 555, 564
AjiI CACGTC 1 cut(s) 234
AluBI AGCT 7 cut(s) 19, 67, 157, 469, 489, 568, 593
AluI AGCT 7 cut(s) 19, 67, 157, 469, 489, 568, 593
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 361, 582
ApeKI GCWGC 3 cut(s) 67, 386, 389
ApoI RAATTY 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 532
AsuNHI GCTAGC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 532
BbvI GCAGC 3 cut(s) 54, 373, 401
BccI CCATC 2 cut(s) 142, 328
BceAI ACGGC 2 cut(s) 8, 376
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 4 cut(s) 20, 101, 198, 590
BfmI CTRYAG 3 cut(s) 138, 387, 456
BisI GCNGC 3 cut(s) 68, 387, 390
BlsI GCNGC 3 cut(s) 69, 388, 391
Bme18I GGWCC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 1 cut(s) 450
BmsI GCATC 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 515
BseXI GCAGC 3 cut(s) 54, 373, 401
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 2 cut(s) 363, 584
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 2 cut(s) 363, 584
Bsp1407I TGTACA 2 cut(s) 346, 570
Bsp143I GATC 3 cut(s) 57, 427, 438
BspACI CCGC 1 cut(s) 209
BspANI GGCC 2 cut(s) 363, 584
BspCNI CTCAG 1 cut(s) 516
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 391
BspOI GCTAGC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 346, 570
BssMI GATC 3 cut(s) 57, 427, 438
Bst4CI ACNGT 3 cut(s) 251, 281, 481
Bst6I CTCTTC 1 cut(s) 366
BstAUI TGTACA 2 cut(s) 346, 570
BstC8I GCNNGC 2 cut(s) 21, 213
BstDEI CTNAG 1 cut(s) 524
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 60, 430, 441
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 57, 427, 438
BstMWI GCNNNNNNNGC 3 cut(s) 73, 395, 590
BstSFI CTRYAG 3 cut(s) 138, 387, 456
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 54, 373, 401
BsuRI GGCC 2 cut(s) 363, 584
BtrI CACGTC 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 21, 213
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 532
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 347, 571
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 3 cut(s) 218, 416, 529
CviQI GTAC 2 cut(s) 347, 571
DdeI CTNAG 1 cut(s) 524
DpnI GATC 3 cut(s) 59, 429, 440
DpnII GATC 3 cut(s) 57, 427, 438
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 532
FaeI CATG 3 cut(s) 221, 419, 532
FaiI YATR 8 cut(s) 175, 219, 366, 368, 417, 458, 530, 581
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 3 cut(s) 217, 415, 528
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 68, 387, 390
Fsp4HI GCNGC 3 cut(s) 68, 387, 390
FspBI CTAG 4 cut(s) 20, 101, 198, 590
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 68, 387, 390
HaeIII GGCC 2 cut(s) 363, 584
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 221, 419, 532
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 3 cut(s) 104, 120, 285
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 1 cut(s) 362
HpyCH4III ACNGT 3 cut(s) 251, 281, 481
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 70, 76, 320, 389, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 395, 590
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 3 cut(s) 221, 419, 532
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 57, 427, 438
LmnI GCTCC 3 cut(s) 64, 448, 520
LpnPI CCDG 3 cut(s) 357, 431, 531
Lsp1109I GCAGC 3 cut(s) 54, 373, 401
LweI GCATC 1 cut(s) 307
MaeI CTAG 4 cut(s) 20, 101, 198, 590
MaeII ACGT 1 cut(s) 233
MalI GATC 3 cut(s) 59, 429, 440
MboI GATC 3 cut(s) 57, 427, 438
MboII GAAGA 1 cut(s) 383
MluCI AATT 4 cut(s) 87, 187, 327, 558
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 300
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 216, 403
MspA1I CMGCKG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 398
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 73, 395, 590
NdeII GATC 3 cut(s) 57, 427, 438
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 3 cut(s) 221, 419, 532
NlaIV GGNNCC 1 cut(s) 450
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 104, 285
PkrI GCNGC 3 cut(s) 69, 388, 391
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 532
PstI CTGCAG 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 348, 572
RsaNI GTAC 2 cut(s) 347, 571
RseI CAYNNNNRTG 2 cut(s) 216, 403
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 68, 387, 390
Sau3AI GATC 3 cut(s) 57, 427, 438
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 3 cut(s) 138, 387, 456
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 216, 403
Sse9I AATT 4 cut(s) 87, 187, 327, 558
SsiI CCGC 1 cut(s) 209
SspMI CTAG 4 cut(s) 20, 101, 198, 590
TaaI ACNGT 3 cut(s) 251, 281, 481
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 165, 441
TasI AATT 4 cut(s) 87, 187, 327, 558
TatI WGTACW 2 cut(s) 346, 570
TfiI GAWTC 2 cut(s) 104, 285
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 286
TseI GCWGC 3 cut(s) 67, 386, 389
TspDTI ATGAA 2 cut(s) 404, 412
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 197
XspI CTAG 4 cut(s) 20, 101, 198, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.