Rroxscaffold_2G00146820

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000835
Physical Location & Seq
Reverse (-)
84682987 .. 84686966
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146820.1

Sequence Viewer

Length: 1947 bp
ATGGAAACCCTAAACCCAACCACCAGCACCACCGTGGACGACGCCGCCGCGAACATCGGCTTCTCAATCCTGATGCGCTTCTCTGACAGCCGTCGCGAAATCGACCTCGAAATCCGCAAGCTCATAACCGTCATGTGCCAGGTATTCCAAGACCACAAGGCTCCTCCGACGCCGCTGGCCTATTTGGGAGCCACGTGCTCCTCTCTCGGCCTGATCTCCGCTTCGAAGCCCGGACCTTCCGATGACGTGCTCCACGCCCACATCACAATTCTGTCCATCGTCATCCCCAAAGTCCCGCCAGCATTTCTCATCAACAATCTCCAGTTGGTCTGCAATTCCTTAGCCCCAGCTCTCCGTTCTTCATCTCCAAGTGCAAGCTTCGACTGTGCCGCCTGCACAGGAGTTAAATACATAGCTCAGTTGCTCATTAGCAGCGCTAACTGCGTCAACAACTGGTCACAAGTTTCGAAACCCTTCAGGTCCTTGTTCAGCTTCGCTTATGTCGTCTCCAGCATCGAGGTAAGAGAACAAGCAGGACTCATCACAGATGCTCTGTACAGACTCTGCCTCCATCCATCATCACCAGATGTTGACCTCGAATTGTTGCTCGATCTAATATGCTCAATATGTCTTTCTGTCTCCCAACACAAGACGAATTTCATCATGAAAACTATAGCTGGTTTGCTCAATTTTGGAGTGCCTAAAGTCTATTCCCTGAACAAGCAAATCTGCAAAATTAAACTCCCTATTATGTTTGATGCGCTCATTGGTATAGACTCTTTTTTACTCGAACAGTCTGACTTAATGAACGTCCAAGATGCAGCAAACGCTTTTATGCGTCTTGTTGCTTATATTGATGAAGGCATGATTAAACAGGGAGTTGACCGTGCTCTGATGAATGCAAATATAGATGATGGAAGCCAGTCTGAGCCAACTCTAATTGAAAAATTCCCAACCAAAGAGGAGCTCGGACGCCAAGCCGCACGCCCGGGTCTACAAGCCGGATCCACACCGTCCGACCACGGGCATGAATCCGCCTACGAGGAGCACCATCCCTCTCGCCCTCCGATCACCGTGAGTCCACCCGATCCGATCACCTTCAAACAACACCATCCAAAACCTCACCCACCGCACCGTACACACACCACGGACGAGCCCGACCGCCACCCACCCATCCCACCACCGAGACGCCACATAGGCGCGCCGCAGCAGCATCGCGCCACCACGGCGAGTCCGATCGACAACGACATCGGCTCCCCGGACATAATAGATCCAAATCGGATCGACTTTGCCCGAGAACACCAAATCGCCGCCCACGCCCCGAACTCGGAAGCAAAGATGACACCGGATCATGCCGCCGCACAACCATGCGCACCTCCGCTCCACACTGCGACTTCCACAAGGCTGCGAAGGGCGGATCGAGAACTCACGGTCCGACACGGAAAACCAGCACTGCCACCTTCCCACGGCCACGTCTTCACCGAGCCCCCGCCGGAATGCCTAAGATCAACACAAACCCGTCCGACGACGACGTCCCAAGGACGCGCCTCGGACGGAGCATCACTCTATGTCGGGGAAACCGGGCGCGTTAAGCTTCTTCTAGAAATGGTTAGTGAGAAATGTGGGCTTGATGCTATTTCGGCCATTTTCCCTCAAGAACACATGGAACTGCTTGCAGAGATCAATCAAAAACTGGGTTCTAAATCTGTGGATGCGAGTTCTCATGTATCCAAAGCAACTACATCTGGGAATAACTTATCTCAGTCCAAGTATATGGACAATTATCGTCGATACTACAATATGAAACGGAAATTGGCTGGTAAAGAGAGTTTGTCTGACCGCCAGTGGAGAGCATTTTTGGATAGGCAGGCTAGGAGAGATGCCAAGCAGGCTATCAGTAAAGGGATATTAGGTGCAGCCAGGATGACAAAGAAGCTTAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

648

Amino Acids

71.08

Weight (kDa)

8.45

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 9 - 178 1.9e-26 RRP12-like, N-terminal HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1531
AatII GACGTC 1 cut(s) 1535
Acc16I TGCGCA 1 cut(s) 1372
AccBSI CCGCTC 1 cut(s) 1381
AccI GTMKAC 1 cut(s) 994
AccII CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
AclWI GGATC 7 cut(s) 999, 1012, 1082, 1265, 1289, 1356, 1425
AcoI YGGCCR 2 cut(s) 1468, 1641
AcsI RAATTY 2 cut(s) 655, 947
AcuI CTGAAG 1 cut(s) 460
AcvI CACGTG 1 cut(s) 195
AcyI GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
AfaI GTAC 2 cut(s) 557, 1138
AfeI AGCGCT 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 1023, 1327, 1466
AgsI TTSAA 2 cut(s) 944, 1102
AjiI CACGTC 2 cut(s) 247, 1474
AjnI CCWGG 2 cut(s) 138, 1919
AjuI GAANNNNNNNTTGG 2 cut(s) 1796, 1828
AleI CACNNNNGTG 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 1416, 1448
AluBI AGCT 9 cut(s) 121, 350, 378, 416, 492, 677, 967, 1594, 1936
AluI AGCT 9 cut(s) 121, 350, 378, 416, 492, 677, 967, 1594, 1936
Alw21I GWGCWC 5 cut(s) 200, 252, 892, 969, 1050
Alw26I GTCTC 3 cut(s) 511, 643, 1180
AlwI GGATC 7 cut(s) 999, 1012, 1082, 1265, 1289, 1356, 1425
AlwNI CAGNNNCTG 1 cut(s) 564
Ama87I CYCGRG 2 cut(s) 988, 1293
Aor51HI AGCGCT 1 cut(s) 436
AoxI GGCC 4 cut(s) 177, 208, 1468, 1641
ApeKI GCWGC 6 cut(s) 432, 821, 1207, 1210, 1405, 1916
ApoI RAATTY 2 cut(s) 655, 947
AscI GGCGCGCC 1 cut(s) 1200
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 9 cut(s) 78, 437, 763, 1202, 1204, 1220, 1373, 1547, 1587
AspS9I GGNCC 3 cut(s) 233, 480, 1432
AsuC2I CCSGG 5 cut(s) 231, 989, 990, 1259, 1582
AsuHPI GGTGA 5 cut(s) 573, 1063, 1087, 1115, 1471
AsuII TTCGAA 2 cut(s) 224, 467
AvaI CYCGRG 2 cut(s) 988, 1293
AvaII GGWCC 3 cut(s) 233, 480, 1432
BamHI GGATCC 1 cut(s) 1004
BanII GRGCYC 3 cut(s) 969, 1158, 1488
BbrPI CACGTG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 1468
Bbv12I GWGCWC 5 cut(s) 200, 252, 892, 969, 1050
BbvI GCAGC 6 cut(s) 444, 833, 1219, 1222, 1392, 1928
BccI CCATC 7 cut(s) 284, 579, 583, 908, 1059, 1119, 1181
BceAI ACGGC 3 cut(s) 75, 1242, 1483
BcgI CGANNNNNNTGC 2 cut(s) 1196, 1230
BciT130I CCWGG 2 cut(s) 140, 1921
BciVI GTATCC 1 cut(s) 1738
BcnI CCSGG 5 cut(s) 231, 989, 990, 1259, 1582
BcoDI GTCTC 3 cut(s) 511, 643, 1180
BfaI CTAG 2 cut(s) 1601, 1872
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 438
BfuI GTATCC 1 cut(s) 1738
BglI GCCNNNNNGGC 3 cut(s) 1197, 1226, 1889
Bme1390I CCNGG 7 cut(s) 140, 231, 989, 990, 1259, 1582, 1921
Bme18I GGWCC 3 cut(s) 233, 480, 1432
BmeT110I CYCGRG 2 cut(s) 988, 1293
BmgBI CACGTC 2 cut(s) 247, 1474
BmgT120I GGNCC 3 cut(s) 233, 480, 1432
BmiI GGNNCC 4 cut(s) 162, 190, 1006, 1255
BmrFI CCNGG 7 cut(s) 140, 231, 989, 990, 1259, 1582, 1921
BmrI ACTGGG 1 cut(s) 1703
BmuI ACTGGG 1 cut(s) 1703
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 1468
BplI GAGNNNNNCTC 2 cut(s) 1548, 1580
BpmI CTGGAG 2 cut(s) 305, 493
Bpu10I CCTNAGC 1 cut(s) 340
Bpu14I TTCGAA 2 cut(s) 224, 467
BpuEI CTTGAG 1 cut(s) 1638
BpuMI CCSGG 5 cut(s) 231, 989, 990, 1259, 1582
BsaAI YACGTR 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 1275
BsaHI GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
BsaJI CCNNGG 9 cut(s) 33, 988, 1021, 1146, 1224, 1257, 1465, 1537, 1548
BsaWI WCCGGW 1 cut(s) 1345
BsaXI ACNNNNNCTCC 6 cut(s) 552, 582, 1238, 1268, 1365, 1395
Bsc4I CCNNNNNNNGG 3 cut(s) 1023, 1327, 1466
Bse1I ACTGG 5 cut(s) 322, 458, 922, 1698, 1843
Bse8I GATNNNNATC 1 cut(s) 1275
BseBI CCWGG 2 cut(s) 140, 1921
BseDI CCNNGG 9 cut(s) 33, 988, 1021, 1146, 1224, 1257, 1465, 1537, 1548
BseGI GGATG 7 cut(s) 282, 571, 1051, 1111, 1173, 1717, 1929
BseJI GATNNNNATC 1 cut(s) 1275
BseLI CCNNNNNNNGG 3 cut(s) 1023, 1327, 1466
BseMII CTCAG 3 cut(s) 431, 918, 1775
BseNI ACTGG 5 cut(s) 322, 458, 922, 1698, 1843
BsePI GCGCGC 1 cut(s) 1200
BseRI GAGGAG 4 cut(s) 153, 190, 977, 1058
BseXI GCAGC 6 cut(s) 444, 833, 1219, 1222, 1392, 1928
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 379, 1935
Bsh1236I CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
Bsh1285I CGRYCG 2 cut(s) 1162, 1239
BshFI GGCC 4 cut(s) 179, 210, 1470, 1643
BsiEI CGRYCG 2 cut(s) 1162, 1239
BsiHKAI GWGCWC 5 cut(s) 200, 252, 892, 969, 1050
BsiHKCI CYCGRG 2 cut(s) 988, 1293
BsiSI CCGG 7 cut(s) 231, 989, 1002, 1259, 1346, 1493, 1581
BslFI GGGAC 2 cut(s) 278, 1519
BslI CCNNNNNNNGG 3 cut(s) 1023, 1327, 1466
BsmAI GTCTC 3 cut(s) 511, 643, 1180
BsmBI CGTCTC 2 cut(s) 511, 1180
BsmFI GGGAC 2 cut(s) 278, 1519
BsmI GAATGC 2 cut(s) 904, 1502
BsnI GGCC 4 cut(s) 179, 210, 1470, 1643
BsoBI CYCGRG 2 cut(s) 988, 1293
Bsp119I TTCGAA 2 cut(s) 224, 467
Bsp1286I GDGCHC 7 cut(s) 200, 252, 892, 969, 1050, 1158, 1488
Bsp1407I TGTACA 1 cut(s) 555
Bsp68I TCGCGA 1 cut(s) 96
BspANI GGCC 4 cut(s) 179, 210, 1470, 1643
BspCNI CTCAG 3 cut(s) 430, 919, 1774
BspFNI CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 4 cut(s) 162, 190, 1006, 1255
BspPI GGATC 7 cut(s) 999, 1012, 1082, 1265, 1289, 1356, 1425
BspT104I TTCGAA 2 cut(s) 224, 467
BsrBI CCGCTC 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 5 cut(s) 322, 458, 922, 1698, 1843
BssECI CCNNGG 9 cut(s) 33, 988, 1021, 1146, 1224, 1257, 1465, 1537, 1548
BssHII GCGCGC 1 cut(s) 1200
BssNI GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
BssT1I CCWWGG 1 cut(s) 1537
Bst2UI CCWGG 2 cut(s) 140, 1921
Bst4CI ACNGT 9 cut(s) 34, 130, 386, 795, 887, 1014, 1075, 1136, 1432
BstACI GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 1 cut(s) 195
BstBI TTCGAA 2 cut(s) 224, 467
BstDEI CTNAG 5 cut(s) 340, 417, 927, 1502, 1761
BstDSI CCRYGG 5 cut(s) 33, 1021, 1146, 1224, 1465
BstF5I GGATG 7 cut(s) 282, 571, 1051, 1111, 1173, 1717, 1929
BstFNI CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 9 cut(s) 78, 437, 763, 1202, 1204, 1220, 1373, 1547, 1587
BstMAI GTCTC 3 cut(s) 511, 643, 1180
BstMCI CGRYCG 2 cut(s) 1162, 1239
BstMWI GCNNNNNNNGC 9 cut(s) 441, 827, 1197, 1210, 1226, 1316, 1591, 1640, 1889
BstNI CCWGG 2 cut(s) 140, 1921
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 7 cut(s) 138, 229, 987, 988, 1257, 1580, 1919
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
BstV1I GCAGC 6 cut(s) 444, 833, 1219, 1222, 1392, 1928
BstV2I GAAGAC 1 cut(s) 1468
BstX2I RGATCY 2 cut(s) 1004, 1270
BstXI CCANNNNNNTGG 1 cut(s) 1774
BstYI RGATCY 2 cut(s) 1004, 1270
BsuI GTATCC 1 cut(s) 1738
BsuRI GGCC 4 cut(s) 179, 210, 1470, 1643
BtgI CCRYGG 5 cut(s) 33, 1021, 1146, 1224, 1465
BtgZI GCGATG 1 cut(s) 1199
BtrI CACGTC 2 cut(s) 247, 1474
BtsCI GGATG 7 cut(s) 282, 571, 1051, 1111, 1173, 1717, 1929
BtsI GCAGTG 2 cut(s) 1386, 1451
BtsIMutI CAGTG 3 cut(s) 1386, 1451, 1850
BtuMI TCGCGA 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 564
CciI TCATGA 1 cut(s) 663
CfoI GCGC 9 cut(s) 78, 437, 763, 1202, 1204, 1220, 1373, 1547, 1587
Cfr13I GGNCC 3 cut(s) 233, 480, 1432
Cfr9I CCCGGG 1 cut(s) 988
CpoI CGGWCCG 1 cut(s) 1432
CseI GACGC 7 cut(s) 50, 178, 433, 827, 981, 1197, 1551
Csp6I GTAC 2 cut(s) 556, 1137
CspI CGGWCCG 1 cut(s) 1432
CviAII CATG 8 cut(s) 133, 664, 865, 1028, 1352, 1368, 1663, 1724
CviQI GTAC 2 cut(s) 556, 1137
DdeI CTNAG 5 cut(s) 340, 417, 927, 1502, 1761
DrdI GACNNNNNNGTC 1 cut(s) 1531
DseDI GACNNNNNNGTC 1 cut(s) 1531
EaeI YGGCCR 2 cut(s) 1468, 1641
EciI GGCGGA 2 cut(s) 1024, 1430
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 1537
Eco24I GRGCYC 3 cut(s) 969, 1158, 1488
Eco47I GGWCC 3 cut(s) 233, 480, 1432
Eco47III AGCGCT 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 460
Eco72I CACGTG 1 cut(s) 195
Eco88I CYCGRG 2 cut(s) 988, 1293
EcoICRI GAGCTC 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 138, 1919
EcoT14I CCWWGG 1 cut(s) 1537
EcoT38I GRGCYC 3 cut(s) 969, 1158, 1488
ErhI CCWWGG 1 cut(s) 1537
Esp3I CGTCTC 2 cut(s) 511, 1180
FaeI CATG 8 cut(s) 136, 667, 868, 1031, 1355, 1371, 1666, 1727
FaqI GGGAC 2 cut(s) 278, 1519
FatI CATG 8 cut(s) 132, 663, 864, 1027, 1351, 1367, 1662, 1723
FauI CCCGC 2 cut(s) 303, 1497
FblI GTMKAC 1 cut(s) 994
FokI GGATG 7 cut(s) 269, 558, 1038, 1098, 1160, 1724, 1936
FriOI GRGCYC 3 cut(s) 969, 1158, 1488
FspAI RTGCGCAY 1 cut(s) 1372
FspBI CTAG 2 cut(s) 1601, 1872
FspI TGCGCA 1 cut(s) 1372
GlaI GCGC 9 cut(s) 77, 436, 762, 1201, 1203, 1219, 1372, 1546, 1586
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 2 cut(s) 305, 493
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 4 cut(s) 179, 210, 1470, 1643
HapII CCGG 7 cut(s) 231, 989, 1002, 1259, 1346, 1493, 1581
HgaI GACGC 7 cut(s) 50, 178, 433, 827, 981, 1197, 1551
HhaI GCGC 9 cut(s) 78, 437, 763, 1202, 1204, 1220, 1373, 1547, 1587
Hin1I GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
Hin1II CATG 8 cut(s) 136, 667, 868, 1031, 1355, 1371, 1666, 1727
Hin6I GCGC 9 cut(s) 76, 435, 761, 1200, 1202, 1218, 1371, 1545, 1585
HinP1I GCGC 9 cut(s) 76, 435, 761, 1200, 1202, 1218, 1371, 1545, 1585
HincII GTYRAC 3 cut(s) 448, 592, 883
HindII GTYRAC 3 cut(s) 448, 592, 883
HindIII AAGCTT 3 cut(s) 376, 1592, 1934
HinfI GANTC 6 cut(s) 537, 561, 776, 1031, 1078, 1231
HpaII CCGG 7 cut(s) 231, 989, 1002, 1259, 1346, 1493, 1581
HphI GGTGA 5 cut(s) 573, 1063, 1087, 1115, 1471
Hpy166II GTNNAC 7 cut(s) 37, 448, 592, 883, 995, 1082, 1139
Hpy188III TCNNGA 6 cut(s) 70, 95, 664, 1421, 1601, 1655
Hpy8I GTNNAC 7 cut(s) 37, 448, 592, 883, 995, 1082, 1139
Hpy99I CGWCG 7 cut(s) 44, 96, 172, 1528, 1531, 1534, 1791
HpyAV CCTTC 6 cut(s) 246, 484, 854, 1108, 1404, 1470
HpyCH4III ACNGT 9 cut(s) 34, 130, 386, 795, 887, 1014, 1075, 1136, 1432
HpyCH4IV ACGT 5 cut(s) 194, 246, 810, 1473, 1532
HpyCH4V TGCA 8 cut(s) 333, 374, 396, 732, 821, 902, 1676, 1916
HpyF10VI GCNNNNNNNGC 9 cut(s) 441, 827, 1197, 1210, 1226, 1316, 1591, 1640, 1889
HpyF3I CTNAG 5 cut(s) 340, 417, 927, 1502, 1761
HpySE526I ACGT 5 cut(s) 194, 246, 810, 1473, 1532
Hsp92I GRCGYC 5 cut(s) 42, 170, 973, 1189, 1532
Hsp92II CATG 8 cut(s) 136, 667, 868, 1031, 1355, 1371, 1666, 1727
HspAI GCGC 9 cut(s) 76, 435, 761, 1200, 1202, 1218, 1371, 1545, 1585
LmnI GCTCC 9 cut(s) 166, 188, 203, 255, 964, 1045, 1259, 1386, 1556
Lsp1109I GCAGC 6 cut(s) 444, 833, 1219, 1222, 1392, 1928
MaeI CTAG 2 cut(s) 1601, 1872
MaeII ACGT 5 cut(s) 194, 246, 810, 1473, 1532
MaeIII GTNAC 1 cut(s) 456
MbiI CCGCTC 1 cut(s) 1381
MboII GAAGA 3 cut(s) 351, 1468, 1589
MflI RGATCY 2 cut(s) 1004, 1270
MhlI GDGCHC 7 cut(s) 200, 252, 892, 969, 1050, 1158, 1488
MlyI GAGTC 5 cut(s) 531, 555, 770, 1087, 1240
MmeI TCCRAC 4 cut(s) 191, 1041, 1459, 1547
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 6 cut(s) 405, 738, 803, 870, 1590, 1938
MslI CAYNNNNRTG 3 cut(s) 32, 1026, 1366
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 7 cut(s) 231, 989, 1002, 1259, 1346, 1493, 1581
MspR9I CCNGG 7 cut(s) 140, 231, 989, 990, 1259, 1582, 1921
Mva1269I GAATGC 2 cut(s) 904, 1502
MvaI CCWGG 2 cut(s) 140, 1921
MvnI CGCG 6 cut(s) 50, 96, 1202, 1218, 1545, 1587
MwoI GCNNNNNNNGC 9 cut(s) 441, 827, 1197, 1210, 1226, 1316, 1591, 1640, 1889
NciI CCSGG 5 cut(s) 231, 989, 990, 1259, 1582
NlaIII CATG 8 cut(s) 136, 667, 868, 1031, 1355, 1371, 1666, 1727
NlaIV GGNNCC 4 cut(s) 162, 190, 1006, 1255
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 456
NruI TCGCGA 1 cut(s) 96
NsbI TGCGCA 1 cut(s) 1372
NspV TTCGAA 2 cut(s) 224, 467
OliI CACNNNNGTG 1 cut(s) 32
PagI TCATGA 1 cut(s) 663
PalAI GGCGCGCC 1 cut(s) 1200
PauI GCGCGC 1 cut(s) 1200
PcsI WCGNNNNNNNCGW 3 cut(s) 501, 1232, 1479
PctI GAATGC 2 cut(s) 904, 1502
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 1031
PflFI GACNNNGTC 1 cut(s) 1531
Ple19I CGATCG 1 cut(s) 1239
PleI GAGTC 5 cut(s) 531, 555, 770, 1086, 1239
PmaCI CACGTG 1 cut(s) 195
PmlI CACGTG 1 cut(s) 195
PpsI GAGTC 5 cut(s) 531, 555, 770, 1086, 1239
Ppu21I YACGTR 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 480
PshAI GACNNNNGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 138, 1919
PspCI CACGTG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 138, 1919
PspN4I GGNNCC 4 cut(s) 162, 190, 1006, 1255
PspPI GGNCC 3 cut(s) 233, 480, 1432
PspPPI RGGWCCY 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 564
PsuI RGATCY 2 cut(s) 1004, 1270
PsyI GACNNNGTC 1 cut(s) 1531
PteI GCGCGC 1 cut(s) 1200
PvuI CGATCG 1 cut(s) 1239
RruI TCGCGA 1 cut(s) 96
RsaI GTAC 2 cut(s) 557, 1138
RsaNI GTAC 2 cut(s) 556, 1137
RseI CAYNNNNRTG 3 cut(s) 32, 1026, 1366
Rsr2I CGGWCCG 1 cut(s) 1432
RsrII CGGWCCG 1 cut(s) 1432
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 6 cut(s) 405, 738, 803, 870, 1590, 1938
Sau96I GGNCC 3 cut(s) 233, 480, 1432
SchI GAGTC 5 cut(s) 531, 555, 770, 1087, 1240
ScrFI CCNGG 7 cut(s) 140, 231, 989, 990, 1259, 1582, 1921
SduI GDGCHC 7 cut(s) 200, 252, 892, 969, 1050, 1158, 1488
SfcI CTRYAG 1 cut(s) 672
SfuI TTCGAA 2 cut(s) 224, 467
SgsI GGCGCGCC 1 cut(s) 1200
SinI GGWCC 3 cut(s) 233, 480, 1432
SmaI CCCGGG 1 cut(s) 990
SmiMI CAYNNNNRTG 3 cut(s) 32, 1026, 1366
SmlI CTYRAG 1 cut(s) 1653
SmoI CTYRAG 1 cut(s) 1653
SspMI CTAG 2 cut(s) 1601, 1872
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 7 cut(s) 138, 229, 987, 988, 1257, 1580, 1919
StyI CCWWGG 1 cut(s) 1537
TaaI ACNGT 9 cut(s) 34, 130, 386, 795, 887, 1014, 1075, 1136, 1432
TaiI ACGT 5 cut(s) 197, 249, 813, 1476, 1535
TatI WGTACW 1 cut(s) 555
TauI GCSGC 9 cut(s) 47, 50, 175, 392, 983, 1207, 1313, 1358, 1361
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 6 cut(s) 405, 738, 803, 870, 1590, 1938
Tru9I TTAA 6 cut(s) 405, 738, 803, 870, 1590, 1938
TscAI CASTG 3 cut(s) 1393, 1458, 1850
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 6 cut(s) 432, 821, 1207, 1210, 1405, 1916
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 8 cut(s) 351, 649, 680, 821, 873, 911, 1044, 1817
TspGWI ACGGA 5 cut(s) 344, 1163, 1455, 1569, 1822
TspMI CCCGGG 1 cut(s) 988
TspRI CASTG 3 cut(s) 1393, 1458, 1850
Tth111I GACNNNGTC 1 cut(s) 1531
VpaK11BI GGWCC 3 cut(s) 233, 480, 1432
XapI RAATTY 2 cut(s) 655, 947
XbaI TCTAGA 1 cut(s) 1600
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaI CCCGGG 1 cut(s) 988
XmiI GTMKAC 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 1601, 1872
ZraI GACGTC 1 cut(s) 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.