Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302753.1

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 857

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgacatttacggctcgtttgctcaatattggaatgacaaaggtttattcactcaacaggcagttgtgcgtgattaaactccctactgtattcagtgcactacgagatatattgggatctgagcatgaagaggccattcatgcagcagtgaacgcatttaagagtcttattcatgcttgcattgatgaaagcttgatcaaacagggggttgaccagattgtgaagaatggaaatatggatgaacggaggtctgggccaactgtaattgaaaaagtgtgtgctattattgaaagcttgcttggatacaactacactcctgtcttggaccttgtatttcaagttgtttcagcgatgtttgatagattaggggtatactcttcttatttcatgagggggacactgaagagcttggcagacatggaaaagctgcctgatgaagattttcctttcaggaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

5.93

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	269, 290, 338
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	4 cut(s)	192, 294, 408, 427
AluI	AGCT	4 cut(s)	192, 294, 408, 427
Alw21I	GWGCWC	1 cut(s)	100
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	132, 254
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	143, 427
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	254, 325
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	155, 414
BceAI	ACGGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	2 cut(s)	144, 428
BlsI	GCNGC	2 cut(s)	145, 429
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	254, 325
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	155, 414
BshFI	GGCC	2 cut(s)	134, 256
BsiHKAI	GWGCWC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	134, 256
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	116, 195
BspANI	GGCC	2 cut(s)	134, 256
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	387
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	398
BssMI	GATC	2 cut(s)	116, 195
BssNAI	GTATAC	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	88, 262
Bst6I	CTCTTC	3 cut(s)	123, 382, 398
BstC8I	GCNNGC	2 cut(s)	178, 296
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	119, 198
BstMBI	GATC	2 cut(s)	116, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 152
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	155, 414
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BstZ17I	GTATAC	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	134, 256
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	100, 153, 398
Cac8I	GCNNGC	2 cut(s)	178, 296
CciI	TCATGA	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	254, 325
CviAII	CATG	5 cut(s)	125, 140, 173, 388, 418
CviJI	RGCY	7 cut(s)	14, 134, 192, 256, 294, 408, 427
CviKI_1	RGCY	7 cut(s)	14, 134, 192, 256, 294, 408, 427
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	118, 197
DpnII	GATC	2 cut(s)	116, 195
Eam1104I	CTCTTC	3 cut(s)	123, 382, 398
EarI	CTCTTC	3 cut(s)	123, 382, 398
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	422
FaeI	CATG	5 cut(s)	128, 143, 176, 391, 421
FaiI	YATR	8 cut(s)	110, 126, 141, 174, 236, 373, 389, 419
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	5 cut(s)	124, 139, 172, 387, 417
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	144, 428
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	144, 428
GluI	GCNGC	2 cut(s)	144, 428
HaeIII	GGCC	2 cut(s)	134, 256
Hin1II	CATG	5 cut(s)	128, 143, 176, 391, 421
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	190, 292
HinfI	GANTC	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	98, 151, 211, 373
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	388, 451
Hpy8I	GTNNAC	4 cut(s)	98, 151, 211, 373
HpyCH4III	ACNGT	2 cut(s)	88, 262
HpyCH4V	TGCA	3 cut(s)	98, 143, 180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 152
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	128, 143, 176, 391, 421
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	116, 195
LguI	GCTCTTC	1 cut(s)	398
LpnPI	CCDG	7 cut(s)	43, 188, 227, 237, 330, 436, 444
Lsp1109I	GCAGC	2 cut(s)	155, 414
MalI	GATC	2 cut(s)	118, 197
MboI	GATC	2 cut(s)	116, 195
MboII	GAAGA	5 cut(s)	140, 235, 369, 415, 449
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	124, 240, 384
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	75, 159
MwoI	GCNNNNNNNGC	2 cut(s)	140, 152
NdeII	GATC	2 cut(s)	116, 195
NlaIII	CATG	5 cut(s)	128, 143, 176, 391, 421
PagI	TCATGA	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	145, 429
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	254, 325
PsuI	RGATCY	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	75, 159
SatI	GCNGC	2 cut(s)	144, 428
Sau3AI	GATC	2 cut(s)	116, 195
Sau96I	GGNCC	2 cut(s)	254, 325
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	45, 194, 251, 296, 330, 410, 429
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	1 cut(s)	264
SspI	AATATT	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	88, 262
TasI	AATT	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	75, 159
Tru9I	TTAA	2 cut(s)	75, 159
TscAI	CASTG	3 cut(s)	100, 153, 405
TseI	GCWGC	2 cut(s)	143, 427
TspDTI	ATGAA	7 cut(s)	128, 141, 161, 201, 255, 376, 450
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	3 cut(s)	100, 153, 405
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.