Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Forward (+)

2859846 .. 2862544

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTCCACATGTCATTCTGTCTCCAACATGAGATAAATTATATAGGGGAATATATATCTAAAATGCTGGGTAGTGAAGTGGCCAAAGTCTATTCCTTGAACAGCCAAATCTGCAAACCTAAGCTCCCTATTGTTTTTGATGCACTCAAAGTTATAATGGTAAAGCCTATTGAAGAAGGTATCGAAGAAGCTGACGTCGAAGAAAGCGTCGAAAAAGACATGGCTCATGCAGCGGAGGCAGTTAGATTTCTAATCAATACTTGCATTGATGAAAGCTTGATCAAACAGGGAGTTGACCATGTTCTGATGAATGTAAATATGTATAACAGAACAAACTCTGAGCCAACCATAATTGAAAAATTGTGTGCTACTATTCAAAGCTTATTTGGTTATCGCGGCAAAACTATCCTGTTCCTTGCTTTGGAAATTGTCTCAACAATGTTCGACAAACTAGGTGTATACTCTTCTTGTTTGATGAATGGTACACTGAAGACCTTGGCAGACATGCAGAAGTTGCCTGATCAAGAATTCCCTTCTAAGAAAGAGGTCAAGCTTGTCCTACAAATGGTTATTGAGAAATGGGGGCTTGTTGATATAATGTCAGTCATGCCTCAAGAACACATGGAACTTCTTGCAGAGCGGATCAATGAACTCCTGGATTCTAAATCTGTGGAGGCGAGATCTAACGTGTCTATAGCAACTACTGTCAGTAACTATTTAAAACGGGAAATGGATGATGATTCGGATATTGAGTATGAGGCCTGCAATAGAGTGTTCAAGGAACAGCATGCTAGGAAAGTTGCTAAGTTCACTATTGCACAAAGGATTCAGGTGCAGGTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

282

Amino Acids

32.02

Weight (kDa)

5.3

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP12_HEAT	PF08161	74 - 206	1.4e-15	Ribosomal RNA-processing protein 12, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AarI	CACCTGC	1 cut(s)	826
AatII	GACGTC	1 cut(s)	198
Acc36I	ACCTGC	1 cut(s)	826
AccBSI	CCGCTC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	396
AciI	CCGC	3 cut(s)	233, 396, 640
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	421, 565
AflIII	ACRYGT	2 cut(s)	9, 687
AgsI	TTSAA	5 cut(s)	100, 173, 356, 377, 778
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	5 cut(s)	124, 191, 276, 381, 553
AluI	AGCT	5 cut(s)	124, 191, 276, 381, 553
Alw26I	GTCTC	2 cut(s)	26, 436
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	2 cut(s)	81, 759
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
BalI	TGGCCA	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	656
BclI	TGATCA	2 cut(s)	279, 520
BcoDI	GTCTC	2 cut(s)	26, 436
BfaI	CTAG	2 cut(s)	452, 792
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	2 cut(s)	231, 397
BlsI	GCNGC	2 cut(s)	232, 398
Bme1390I	CCNGG	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	656
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 565
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	739
BseLI	CCNNNNNNNGG	2 cut(s)	421, 565
BseMII	CTCAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	83, 761
BslI	CCNNNNNNNGG	2 cut(s)	421, 565
BsmAI	GTCTC	2 cut(s)	26, 436
BsnI	GGCC	2 cut(s)	83, 761
Bsp143I	GATC	4 cut(s)	279, 520, 642, 680
BspACI	CCGC	3 cut(s)	233, 396, 640
BspANI	GGCC	2 cut(s)	83, 761
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	650
BsrBI	CCGCTC	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	4 cut(s)	279, 520, 642, 680
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	763, 789
BstDEI	CTNAG	4 cut(s)	120, 339, 537, 804
BstF5I	GGATG	1 cut(s)	739
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	4 cut(s)	282, 523, 645, 683
BstMAI	GTCTC	2 cut(s)	26, 436
BstMBI	GATC	4 cut(s)	279, 520, 642, 680
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 230, 236, 514
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	3 cut(s)	13, 508, 791
BstSCI	CCNGG	1 cut(s)	654
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BstZ17I	GTATAC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	83, 761
BtsCI	GGATG	1 cut(s)	739
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	2 cut(s)	763, 789
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	9 cut(s)	10, 29, 220, 227, 299, 505, 607, 622, 788
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	4 cut(s)	120, 339, 537, 804
DpnI	GATC	4 cut(s)	281, 522, 644, 682
DpnII	GATC	4 cut(s)	279, 520, 642, 680
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	9 cut(s)	13, 32, 223, 230, 302, 508, 610, 625, 791
FatI	CATG	9 cut(s)	9, 28, 219, 226, 298, 504, 606, 621, 787
FbaI	TGATCA	2 cut(s)	279, 520
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	231, 397
FokI	GGATG	1 cut(s)	746
Fsp4HI	GCNGC	2 cut(s)	231, 397
FspBI	CTAG	2 cut(s)	452, 792
GluI	GCNGC	2 cut(s)	231, 397
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	83, 761
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	9 cut(s)	13, 32, 223, 230, 302, 508, 610, 625, 791
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	3 cut(s)	274, 379, 551
HinfI	GANTC	3 cut(s)	659, 740, 826
Hpy166II	GTNNAC	4 cut(s)	295, 460, 485, 810
Hpy188I	TCNGA	3 cut(s)	306, 340, 745
Hpy188III	TCNNGA	2 cut(s)	524, 614
Hpy8I	GTNNAC	4 cut(s)	295, 460, 485, 810
Hpy99I	CGWCG	2 cut(s)	200, 212
HpyAV	CCTTC	2 cut(s)	170, 543
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	2 cut(s)	195, 687
HpyCH4V	TGCA	9 cut(s)	114, 143, 230, 264, 508, 635, 765, 818, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 230, 236, 514
HpyF3I	CTNAG	4 cut(s)	120, 339, 537, 804
HpySE526I	ACGT	2 cut(s)	195, 687
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	9 cut(s)	13, 32, 223, 230, 302, 508, 610, 625, 791
Ksp22I	TGATCA	2 cut(s)	279, 520
Kzo9I	GATC	4 cut(s)	279, 520, 642, 680
LmnI	GCTCC	2 cut(s)	9, 129
LpnPI	CCDG	9 cut(s)	53, 272, 422, 531, 641, 668, 775, 815, 821
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	452, 792
MaeII	ACGT	2 cut(s)	195, 687
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	4 cut(s)	281, 522, 644, 682
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	4 cut(s)	279, 520, 642, 680
MboII	GAAGA	5 cut(s)	185, 197, 212, 456, 502
MflI	RGATCY	1 cut(s)	680
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	5 cut(s)	37, 351, 359, 426, 527
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	229, 538, 621, 667, 751
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	111, 230, 236, 514
NdeII	GATC	4 cut(s)	279, 520, 642, 680
NlaIII	CATG	9 cut(s)	13, 32, 223, 230, 302, 508, 610, 625, 791
NspI	RCATGY	3 cut(s)	13, 508, 791
PaeI	GCATGC	1 cut(s)	791
PaqCI	CACCTGC	1 cut(s)	826
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	659, 740, 826
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	232, 398
PscI	ACATGT	1 cut(s)	9
PsiI	TTATAA	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	654
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	2 cut(s)	231, 397
Sau3AI	GATC	4 cut(s)	279, 520, 642, 680
ScrFI	CCNGG	1 cut(s)	656
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	5 cut(s)	37, 351, 359, 426, 527
SseBI	AGGCCT	1 cut(s)	761
SsiI	CCGC	3 cut(s)	233, 396, 640
SspMI	CTAG	2 cut(s)	452, 792
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	2 cut(s)	198, 690
TaqI	TCGA	4 cut(s)	183, 198, 210, 444
TasI	AATT	5 cut(s)	37, 351, 359, 426, 527
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	659, 740, 826
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	285, 323, 491, 663
TspRI	CASTG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	3 cut(s)	13, 508, 791
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	2 cut(s)	452, 792
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.