Rh2DG096400

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000835
Physical Location & Seq
Forward (+)
7573840 .. 7576761
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG096400.1

Sequence Viewer

Length: 1740 bp
ATGGAAACCCTAACCGCCGTAGACGACGGCAACATAGGCACCTCAATCCTGATGCGCTTCACCGACCCCAACAACCAAGTCGACCTCGAAATCCGCAAACTCATCGTCGTCATGGCCCAGCTCTTCCGAGACCACAACGCCGCTCCGACGCCGGAAGCCTACCTCGGCTCCACCTGCTCCTCTCTCGACCTCGTCGCCTCCACCTTCGACGTCTCCAACCCCAAACGTCCCACTGACGTCATCGACGCCCACCTCACAGTTCTCTCCATCGTCATTCCGAAAGCCCCCGCCAGATTTCTGATGAGCAATCTCCAGTTGATCGTTGCTTGTTTGAGGCGACCTCTCCGGTCTAAGTTTCCGTTTCCGTTGGACGCCACTACCTGCTGCTTAGGAGTTAAATGCCTTGCTCACTTGATCATCGTTATCACAAAACGCTTCAACAGCTGGTCAGATGTTTCCGAACTCTACAGCTTCTTACTCACCTTCGCTACCATGACTGGCACCTGCCTGGTGACAGACGAAGCGTGTTCGAGTCTTCATCATGTACTACAATGTTTTCAAGGCACGCCGCTGCTTGACCCTGCAAGCAAACAGATTGCTCACTTGTTGAATAAGTATCCTCCGCCGCAGCAAGCAATCCAACCAGACATCTGCAAGGAGAGTCAAGTAGTTCAACGCAAAGTTTTTAAGGCCGTGCTTGCTTTGGATGCTGTGGCAGTACTTCTTCCCGTTATGTCAACCCAGGACAGAACTGCTGTGCTCTTCTACTATAAAACTCTGTTTGAACTGCAACAAGGCTATGTTACATTTCGCATAATAAATGGTGTGCATAGAGTTTGTCTCAACCCATCTCCAGACGTTTCTCCTGAATTGTTGCTCGATCTAATATGCTCGATATGTCATTCTGTCTCCAAACATGAGACACATTATATTGTGAAAAATATATCTGAATTGCTGGCTACTGGAGTGGCAAAAGTCTATTCCTTGAACAGGAAAATCTGCGAAACTAAGCTCCCTATTGTGTTTGATGCACTCAAAGTTATAATGGTAAAGCCTGAAGAAGAAGACATCGCTCATGCAGCACAGGCATTTAAGTGTTTAATTCGTGCTTGCATCGATGAAAGCTTGATCAAACAGGGAGTTGACCGTATTCTGATGAATGCAAATATGTATAACAGAACAAACTCTGAGCCAACTATAATTGAAAAATTGGGTGCTACTATTCAAAGCTTATTTGGTTATTCCGACACTACTATCTTGTACCTTGCTTTTGAAATTGTCTCAACAATGTTCAAGAAACTAGGGGTATACTCTTCTTATTTGATGAAGGGTACACTGAAGACCTTAGCAGACATGCAGAAGTTGCCTGATCAAGAGTTCCGTTTCAAGGAGGAGGTCAAGCTTGTTCTACAAGTGGTTGTTGAGAAATGGGGGCGTGATGCTATAATGGCTGTCTTGCCTCAAGAACACATGGAACTGCTTGCAGAGATCTATGAACAGCTGGGTTCTAAATCTGTGGAGGCGAGATCTAATGTGTCCACAGAAACTACTGTCAGAAACAATCAAGCGTATGATAAAGCACCATGTAACAATTCAAAACGGGAGATGGATGACCCATATATTGAGTATGAGGCCTGGAATAGAGAGTTCAGGGAATGGCGTGCTAGGAATATTGCCAAGGGTGCTGCCGCACGAAGGATGTTGGGTGCAGCTGCGATGACAAAGAAGCTTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

579

Amino Acids

65.01

Weight (kDa)

8.05

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 6 - 286 3.6e-48 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 356 - 488 4.1e-16 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AarI CACCTGC 2 cut(s) 182, 512
AatII GACGTC 2 cut(s) 213, 240
Acc36I ACCTGC 3 cut(s) 182, 389, 512
AccB1I GGYRCC 2 cut(s) 38, 500
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 3 cut(s) 21, 81, 1308
AciI CCGC 8 cut(s) 15, 94, 141, 288, 569, 623, 626, 1689
AcuI CTGAAG 2 cut(s) 1077, 1358
AcyI GRCGYC 5 cut(s) 149, 210, 237, 246, 372
AfaI GTAC 4 cut(s) 546, 720, 1262, 1333
AfiI CCNNNNNNNGG 3 cut(s) 990, 1387, 1695
AjnI CCWGG 3 cut(s) 507, 741, 1634
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 6 cut(s) 123, 217, 845, 913, 914, 1285
AoxI GGCC 3 cut(s) 114, 690, 1632
ApeKI GCWGC 7 cut(s) 384, 571, 628, 1079, 1685, 1709, 1712
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 52, 472, 523
BanI GGYRCC 2 cut(s) 38, 500
BbsI GAAGAC 3 cut(s) 527, 1071, 1346
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 7 cut(s) 371, 558, 640, 1091, 1672, 1699, 1721
BccI CCATC 3 cut(s) 275, 856, 1600
BceAI ACGGC 3 cut(s) 2, 43, 677
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 3 cut(s) 509, 743, 1636
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 3 cut(s) 414, 1128, 1369
BcoDI GTCTC 6 cut(s) 123, 217, 845, 913, 914, 1285
BfaI CTAG 3 cut(s) 1301, 1665, 1738
BfmI CTRYAG 1 cut(s) 466
BfuAI ACCTGC 3 cut(s) 182, 389, 512
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 2 cut(s) 1488, 1526
BmcAI AGTACT 1 cut(s) 720
Bme1390I CCNGG 3 cut(s) 509, 743, 1636
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 3 cut(s) 40, 169, 502
BmrFI CCNGG 3 cut(s) 509, 743, 1636
BmsI GCATC 5 cut(s) 42, 697, 1018, 1122, 1429
BpiI GAAGAC 3 cut(s) 527, 1071, 1346
BplI GAGNNNNNCTC 4 cut(s) 325, 357, 825, 857
BpmI CTGGAG 3 cut(s) 296, 837, 984
Bpu10I CCTNAGC 2 cut(s) 388, 1345
BpuEI CTTGAG 1 cut(s) 1446
Bsa29I ATCGAT 1 cut(s) 1116
BsaHI GRCGYC 5 cut(s) 149, 210, 237, 246, 372
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 163, 741, 1677
BsaWI WCCGGW 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 990, 1387, 1695
Bse1I ACTGG 3 cut(s) 313, 502, 967
BseBI CCWGG 3 cut(s) 509, 743, 1636
BseCI ATCGAT 1 cut(s) 1116
BseDI CCNNGG 3 cut(s) 163, 741, 1677
BseGI GGATG 3 cut(s) 712, 1615, 1704
BseLI CCNNNNNNNGG 3 cut(s) 990, 1387, 1695
BseMII CTCAG 1 cut(s) 1179
BseNI ACTGG 3 cut(s) 313, 502, 967
BseRI GAGGAG 2 cut(s) 169, 1406
BseXI GCAGC 7 cut(s) 371, 558, 640, 1091, 1672, 1699, 1721
BseYI CCCAGC 2 cut(s) 117, 1501
BsgI GTGCAG 1 cut(s) 1728
BshFI GGCC 3 cut(s) 116, 692, 1634
BshNI GGYRCC 2 cut(s) 38, 500
BshVI ATCGAT 1 cut(s) 1116
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 2 cut(s) 152, 346
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 990, 1387, 1695
BsmAI GTCTC 6 cut(s) 123, 217, 845, 913, 914, 1285
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 1165
BsnI GGCC 3 cut(s) 116, 692, 1634
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
BspACI CCGC 8 cut(s) 15, 94, 141, 288, 569, 623, 626, 1689
BspANI GGCC 3 cut(s) 116, 692, 1634
BspCNI CTCAG 1 cut(s) 1180
BspDI ATCGAT 1 cut(s) 1116
BspLI GGNNCC 3 cut(s) 40, 169, 502
BspMI ACCTGC 3 cut(s) 182, 389, 512
BspQI GCTCTTC 2 cut(s) 128, 767
BspT107I GGYRCC 2 cut(s) 38, 500
BspTNI GGTCTC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 143
BsrI ACTGG 3 cut(s) 313, 502, 967
BssECI CCNNGG 3 cut(s) 163, 741, 1677
BssMI GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
BssNAI GTATAC 1 cut(s) 1309
BssNI GRCGYC 5 cut(s) 149, 210, 237, 246, 372
BssT1I CCWWGG 1 cut(s) 1677
Bst1107I GTATAC 1 cut(s) 1309
Bst2UI CCWGG 3 cut(s) 509, 743, 1636
Bst4CI ACNGT 3 cut(s) 259, 1148, 1552
Bst6I CTCTTC 3 cut(s) 128, 767, 1318
BstACI GRCGYC 5 cut(s) 149, 210, 237, 246, 372
BstAPI GCANNNNNTGC 1 cut(s) 1363
BstC8I GCNNGC 8 cut(s) 566, 586, 633, 699, 957, 1111, 1482, 1662
BstDEI CTNAG 5 cut(s) 351, 388, 1008, 1188, 1345
BstENI CCTNNNNNAGG 1 cut(s) 988
BstF5I GGATG 3 cut(s) 712, 1615, 1704
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 7 cut(s) 321, 417, 883, 1131, 1372, 1491, 1529
BstMAI GTCTC 6 cut(s) 123, 217, 845, 913, 914, 1285
BstMBI GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
BstNI CCWGG 3 cut(s) 509, 743, 1636
BstNSI RCATGY 1 cut(s) 1357
BstSCI CCNGG 3 cut(s) 507, 741, 1634
BstSFI CTRYAG 1 cut(s) 466
BstV1I GCAGC 7 cut(s) 371, 558, 640, 1091, 1672, 1699, 1721
BstV2I GAAGAC 3 cut(s) 527, 1071, 1346
BstX2I RGATCY 2 cut(s) 1488, 1526
BstYI RGATCY 2 cut(s) 1488, 1526
BstZ17I GTATAC 1 cut(s) 1309
Bsu15I ATCGAT 1 cut(s) 1116
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 3 cut(s) 116, 692, 1634
BsuTUI ATCGAT 1 cut(s) 1116
BtgZI GCGATG 2 cut(s) 1054, 1730
BtsCI GGATG 3 cut(s) 712, 1615, 1704
BtsIMutI CAGTG 2 cut(s) 231, 1334
BveI ACCTGC 3 cut(s) 182, 389, 512
Cac8I GCNNGC 8 cut(s) 566, 586, 633, 699, 957, 1111, 1482, 1662
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 1116
CseI GACGC 3 cut(s) 157, 254, 380
Csp6I GTAC 4 cut(s) 545, 719, 1261, 1332
CviAII CATG 8 cut(s) 112, 493, 542, 917, 1076, 1354, 1471, 1584
CviQI GTAC 4 cut(s) 545, 719, 1261, 1332
DdeI CTNAG 5 cut(s) 351, 388, 1008, 1188, 1345
DpnI GATC 7 cut(s) 320, 416, 882, 1130, 1371, 1490, 1528
DpnII GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
Eam1104I CTCTTC 3 cut(s) 128, 767, 1318
EarI CTCTTC 3 cut(s) 128, 767, 1318
EciI GGCGGA 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 1677
Eco147I AGGCCT 1 cut(s) 1634
Eco31I GGTCTC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 1077, 1358
EcoNI CCTNNNNNAGG 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 507, 741, 1634
EcoT14I CCWWGG 1 cut(s) 1677
ErhI CCWWGG 1 cut(s) 1677
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 8 cut(s) 115, 496, 545, 920, 1079, 1357, 1474, 1587
FaqI GGGAC 1 cut(s) 213
FatI CATG 8 cut(s) 111, 492, 541, 916, 1075, 1353, 1470, 1583
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 3 cut(s) 414, 1128, 1369
FblI GTMKAC 3 cut(s) 21, 81, 1308
FokI GGATG 3 cut(s) 719, 1622, 1711
FspBI CTAG 3 cut(s) 1301, 1665, 1738
GlaI GCGC 1 cut(s) 56
GsaI CCCAGC 2 cut(s) 121, 1505
GsuI CTGGAG 3 cut(s) 296, 837, 984
HaeIII GGCC 3 cut(s) 116, 692, 1634
HapII CCGG 2 cut(s) 152, 346
HgaI GACGC 3 cut(s) 157, 254, 380
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 5 cut(s) 149, 210, 237, 246, 372
Hin1II CATG 8 cut(s) 115, 496, 545, 920, 1079, 1357, 1474, 1587
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 3 cut(s) 82, 738, 1144
HindII GTYRAC 3 cut(s) 82, 738, 1144
HindIII AAGCTT 4 cut(s) 1123, 1228, 1400, 1727
HinfI GANTC 2 cut(s) 532, 661
HpaII CCGG 2 cut(s) 152, 346
HphI GGTGA 3 cut(s) 52, 472, 523
Hpy166II GTNNAC 7 cut(s) 22, 82, 738, 1144, 1309, 1334, 1539
Hpy188III TCNNGA 7 cut(s) 49, 185, 854, 866, 1294, 1373, 1463
Hpy8I GTNNAC 7 cut(s) 22, 82, 738, 1144, 1309, 1334, 1539
Hpy99I CGWCG 6 cut(s) 29, 110, 151, 197, 212, 248
HpyAV CCTTC 4 cut(s) 214, 493, 1321, 1689
HpyCH4III ACNGT 3 cut(s) 259, 1148, 1552
HpyCH4IV ACGT 4 cut(s) 210, 226, 237, 858
HpyF3I CTNAG 5 cut(s) 351, 388, 1008, 1188, 1345
HpySE526I ACGT 4 cut(s) 210, 226, 237, 858
Hsp92I GRCGYC 5 cut(s) 149, 210, 237, 246, 372
Hsp92II CATG 8 cut(s) 115, 496, 545, 920, 1079, 1357, 1474, 1587
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 3 cut(s) 414, 1128, 1369
Kzo9I GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
LguI GCTCTTC 2 cut(s) 128, 767
LmnI GCTCC 4 cut(s) 148, 173, 182, 1017
Lsp1109I GCAGC 7 cut(s) 371, 558, 640, 1091, 1672, 1699, 1721
LweI GCATC 5 cut(s) 42, 697, 1018, 1122, 1429
MaeI CTAG 3 cut(s) 1301, 1665, 1738
MaeII ACGT 4 cut(s) 210, 226, 237, 858
MaeIII GTNAC 3 cut(s) 511, 802, 1586
MalI GATC 7 cut(s) 320, 416, 882, 1130, 1371, 1490, 1528
MbiI CCGCTC 1 cut(s) 143
MboI GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
MboII GAAGA 9 cut(s) 115, 527, 716, 754, 1070, 1073, 1076, 1305, 1351
MflI RGATCY 2 cut(s) 1488, 1526
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 7 cut(s) 869, 950, 1101, 1200, 1208, 1275, 1591
MlyI GAGTC 2 cut(s) 541, 670
MmeI TCCRAC 5 cut(s) 170, 240, 348, 664, 1269
MseI TTAA 5 cut(s) 396, 687, 1092, 1100, 1731
MslI CAYNNNNRTG 1 cut(s) 1093
MspA1I CMGCKG 4 cut(s) 444, 571, 1501, 1712
MspI CCGG 2 cut(s) 152, 346
MspR9I CCNGG 3 cut(s) 509, 743, 1636
Mva1269I GAATGC 1 cut(s) 1165
MvaI CCWGG 3 cut(s) 509, 743, 1636
NdeII GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
NlaIII CATG 8 cut(s) 115, 496, 545, 920, 1079, 1357, 1474, 1587
NlaIV GGNNCC 3 cut(s) 40, 169, 502
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 1357
PaqCI CACCTGC 2 cut(s) 182, 512
PceI AGGCCT 1 cut(s) 1634
PciSI GCTCTTC 2 cut(s) 128, 767
PctI GAATGC 1 cut(s) 1165
PflFI GACNNNGTC 1 cut(s) 191
PleI GAGTC 2 cut(s) 540, 669
PpsI GAGTC 2 cut(s) 540, 669
PsiI TTATAA 1 cut(s) 1043
Psp6I CCWGG 3 cut(s) 507, 741, 1634
PspFI CCCAGC 2 cut(s) 117, 1501
PspGI CCWGG 3 cut(s) 507, 741, 1634
PspN4I GGNNCC 3 cut(s) 40, 169, 502
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 2 cut(s) 1488, 1526
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 3 cut(s) 444, 1501, 1712
RsaI GTAC 4 cut(s) 546, 720, 1262, 1333
RsaNI GTAC 4 cut(s) 545, 719, 1261, 1332
RseI CAYNNNNRTG 1 cut(s) 1093
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 2 cut(s) 128, 767
SaqAI TTAA 5 cut(s) 396, 687, 1092, 1100, 1731
Sau3AI GATC 7 cut(s) 318, 414, 880, 1128, 1369, 1488, 1526
Sau96I GGNCC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 2 cut(s) 541, 670
ScrFI CCNGG 3 cut(s) 509, 743, 1636
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 5 cut(s) 42, 697, 1018, 1122, 1429
SfcI CTRYAG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 1093
SmlI CTYRAG 1 cut(s) 1461
SmoI CTYRAG 1 cut(s) 1461
Sse9I AATT 7 cut(s) 869, 950, 1101, 1200, 1208, 1275, 1591
SseBI AGGCCT 1 cut(s) 1634
SsiI CCGC 8 cut(s) 15, 94, 141, 288, 569, 623, 626, 1689
SspI AATATT 1 cut(s) 1672
SspMI CTAG 3 cut(s) 1301, 1665, 1738
StuI AGGCCT 1 cut(s) 1634
StyD4I CCNGG 3 cut(s) 507, 741, 1634
StyI CCWWGG 1 cut(s) 1677
TaaI ACNGT 3 cut(s) 259, 1148, 1552
TaiI ACGT 4 cut(s) 213, 229, 240, 861
TaqI TCGA 9 cut(s) 81, 87, 186, 207, 243, 530, 879, 893, 1116
TasI AATT 7 cut(s) 869, 950, 1101, 1200, 1208, 1275, 1591
TatI WGTACW 2 cut(s) 544, 718
TauI GCSGC 4 cut(s) 143, 571, 628, 1691
Tru1I TTAA 5 cut(s) 396, 687, 1092, 1100, 1731
Tru9I TTAA 5 cut(s) 396, 687, 1092, 1100, 1731
TscAI CASTG 2 cut(s) 238, 1341
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 7 cut(s) 384, 571, 628, 1079, 1685, 1709, 1712
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 5 cut(s) 527, 1134, 1172, 1340, 1509
TspGWI ACGGA 3 cut(s) 348, 354, 1370
TspRI CASTG 2 cut(s) 238, 1341
Tth111I GACNNNGTC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 988
XceI RCATGY 1 cut(s) 1357
XmiI GTMKAC 3 cut(s) 21, 81, 1308
XspI CTAG 3 cut(s) 1301, 1665, 1738
ZraI GACGTC 2 cut(s) 211, 238
ZrmI AGTACT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.