RLG00000018151

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000835
Physical Location & Seq
Forward (+)
26151373 .. 26155362
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018151

Sequence Viewer

Length: 516 bp
ATGGCACATGACTTCATAGCTCAGAAGGTTGCTCCCTCCGTCGTTGCCTACTTGGAGGCCACGTGTTTGTCTCTGTCCCAGCTCCCGTCCTCCTCCGAGCCTCACGTCATCGAGGCCCTCTTCACAATTCTCTCCGTCGTCATTCCACAAGTCTCACCCGAAATTCTGAATAGCTGCAGCAAGTTGGTATCCGAGGCCGTGGTCCGTCTTCTCCGAATTCAACCCTCATCTTTGACTAACAATGCAGGCGCGTTGGGACTGAAATGTATATCACAGTTGCTCTCTGCTATTGTCCTCAACAACTCTAACTCTACCTGGTCCGACGTGAGGAAACCATCATCTCATGTGATTGGGGAGGTGCTGCAAAGTTTCCAAGGCACACCGCATCTTGCCCCTGCAAGTGAAGCCCTTACTAGCTTGTTTGAAAGGTGGTGGCTTCTTGTGCTTTCTGGTGGTGGCGCATCAAATACTGCTGCTGCTGCTGCCTTGACTCGGCGAGGAGTCCCAGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

172

Amino Acids

18.1

Weight (kDa)

6.4

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 5 - 153 3.7e-25 RRP12-like, N-terminal HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AciI CCGC 1 cut(s) 383
AcsI RAATTY 2 cut(s) 162, 216
AcvI CACGTG 1 cut(s) 63
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 2 cut(s) 327, 492
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 221, 425
AjiI CACGTC 2 cut(s) 106, 325
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 4 cut(s) 20, 82, 174, 417
AluI AGCT 4 cut(s) 20, 82, 174, 417
Alw26I GTCTC 2 cut(s) 75, 157
AoxI GGCC 3 cut(s) 57, 114, 195
ApeKI GCWGC 7 cut(s) 174, 177, 361, 473, 476, 479, 482
ApoI RAATTY 2 cut(s) 162, 216
AspLEI GCGC 2 cut(s) 251, 461
AspS9I GGNCC 3 cut(s) 115, 202, 318
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 202, 318
BbrPI CACGTG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 7 cut(s) 161, 189, 348, 460, 463, 466, 469
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 75, 157
BfaI CTAG 2 cut(s) 414, 514
BfmI CTRYAG 1 cut(s) 175
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 7 cut(s) 175, 178, 362, 474, 477, 480, 483
BlsI GCNGC 7 cut(s) 176, 179, 363, 475, 478, 481, 484
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 2 cut(s) 202, 318
BmgBI CACGTC 2 cut(s) 106, 325
BmgT120I GGNCC 3 cut(s) 115, 202, 318
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 394, 470
BpiI GAAGAC 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 192, 198, 373
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 492
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 192, 198, 373
BseLI CCNNNNNNNGG 2 cut(s) 327, 492
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 82, 513
BseXI GCAGC 7 cut(s) 161, 189, 348, 460, 463, 466, 469
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 3 cut(s) 59, 116, 197
BslFI GGGAC 3 cut(s) 61, 270, 488
BslI CCNNNNNNNGG 2 cut(s) 327, 492
BsmAI GTCTC 2 cut(s) 75, 157
BsmFI GGGAC 3 cut(s) 61, 270, 488
BsnI GGCC 3 cut(s) 59, 116, 197
BspACI CCGC 1 cut(s) 383
BspANI GGCC 3 cut(s) 59, 116, 197
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 192, 198, 373
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 2 cut(s) 251, 461
BstMAI GTCTC 2 cut(s) 75, 157
BstMWI GCNNNNNNNGC 4 cut(s) 404, 442, 479, 482
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 175
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 7 cut(s) 161, 189, 348, 460, 463, 466, 469
BstV2I GAAGAC 1 cut(s) 200
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 59, 116, 197
BtgI CCRYGG 1 cut(s) 198
BtrI CACGTC 2 cut(s) 106, 325
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 251, 461
Cfr13I GGNCC 3 cut(s) 115, 202, 318
CsiI ACCWGGT 1 cut(s) 314
Csp6I GTAC 1 cut(s) 511
CviAII CATG 2 cut(s) 8, 344
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 202, 318
Eco72I CACGTG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 11, 347
FaiI YATR 4 cut(s) 9, 17, 269, 345
FaqI GGGAC 3 cut(s) 61, 270, 488
FatI CATG 2 cut(s) 7, 343
Fnu4HI GCNGC 7 cut(s) 175, 178, 362, 474, 477, 480, 483
Fsp4HI GCNGC 7 cut(s) 175, 178, 362, 474, 477, 480, 483
FspBI CTAG 2 cut(s) 414, 514
GlaI GCGC 2 cut(s) 250, 460
GluI GCNGC 7 cut(s) 175, 178, 362, 474, 477, 480, 483
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 3 cut(s) 59, 116, 197
HhaI GCGC 2 cut(s) 251, 461
Hin1II CATG 2 cut(s) 11, 347
Hin6I GCGC 2 cut(s) 249, 459
HinP1I GCGC 2 cut(s) 249, 459
HinfI GANTC 2 cut(s) 490, 501
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 6 cut(s) 24, 97, 168, 193, 215, 322
Hpy99I CGWCG 3 cut(s) 44, 140, 326
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 3 cut(s) 62, 105, 324
HpyCH4V TGCA 4 cut(s) 177, 245, 364, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 442, 479, 482
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 3 cut(s) 62, 105, 324
Hsp92II CATG 2 cut(s) 11, 347
HspAI GCGC 2 cut(s) 249, 459
LmnI GCTCC 2 cut(s) 37, 87
LpnPI CCDG 6 cut(s) 92, 231, 301, 328, 408, 435
Lsp1109I GCAGC 7 cut(s) 161, 189, 348, 460, 463, 466, 469
LweI GCATC 2 cut(s) 394, 470
MabI ACCWGGT 1 cut(s) 314
MaeI CTAG 2 cut(s) 414, 514
MaeII ACGT 3 cut(s) 62, 105, 324
MboII GAAGA 2 cut(s) 112, 200
MluCI AATT 3 cut(s) 126, 162, 216
MlyI GAGTC 2 cut(s) 484, 510
MmeI TCCRAC 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 4 cut(s) 404, 442, 479, 482
NlaIII CATG 2 cut(s) 11, 347
NmeAIII GCCGAG 1 cut(s) 472
PkrI GCNGC 7 cut(s) 176, 179, 363, 475, 478, 481, 484
PleI GAGTC 2 cut(s) 484, 509
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 2 cut(s) 484, 509
Ppu21I YACGTR 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 314
PspCI CACGTG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 3 cut(s) 115, 202, 318
PstI CTGCAG 1 cut(s) 179
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SatI GCNGC 7 cut(s) 175, 178, 362, 474, 477, 480, 483
Sau96I GGNCC 3 cut(s) 115, 202, 318
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 2 cut(s) 484, 510
ScrFI CCNGG 1 cut(s) 316
SexAI ACCWGGT 1 cut(s) 314
SfaNI GCATC 2 cut(s) 394, 470
SfcI CTRYAG 1 cut(s) 175
SinI GGWCC 2 cut(s) 202, 318
Sse9I AATT 3 cut(s) 126, 162, 216
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 414, 514
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 3 cut(s) 65, 108, 327
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 126, 162, 216
TatI WGTACW 1 cut(s) 510
TseI GCWGC 7 cut(s) 174, 177, 361, 473, 476, 479, 482
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 3 cut(s) 28, 124, 194
VpaK11BI GGWCC 2 cut(s) 202, 318
XapI RAATTY 2 cut(s) 162, 216
XspI CTAG 2 cut(s) 414, 514
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.