Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Forward (+)

17991271 .. 17995646

Gene Structure 4376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0193100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTGCCGCAGCTCTGTTCGTTTTGAGCGCAAATCAAAGCTTTTTGAAGCTGTTCTCCGAAAAGGTAAAAATCTCCGCCAGATGTCGACTGCGGGGAATTCTTCGAACATCGTGTGGCATAAATGTGCGGTGGAGAAACTGGATAGGCAGCGTTTACTTCAGCAGAAAGGCTGTGTCATATGGATTACTGGTCTTAGTGGTTCAGGAAAAAGCACTGTGGCGTGTGCTTTGAGTCAAGGCTTGCACTTGAGAGGAAAGCTGACCTATATTCTTGATGGTGACAACGTTCGGCATGGTCTAAATCGTGATCTTGGTTTCAACGCAGAGGATCGTGCAGAAAACATACGAAGAATTGCTGAGGTCGCTAAGCTGTTTGCGGATGCTGGCATCATTTGTATTGCTAGTTTAATATCTCCTTACCGAAAGGACCGAGATGCCTGCCGTGCACTATTTCCGGAAGGAGATTTTATTGAGGTGTTCATGGACGTGCCACTCAACATATGTGAGAATAGGGATCCGAAGGGCCTCTACAAGCTTGCACGAGCTGGAAAAATCAAAGGTTTTACTGGGGTTGATGATCCATATGAGCCACCACTAAACTGCGAGATAGTGTTGCAGCAGAAGGGAAGGGACTGCGTCTCCCCAAGTAGTATGGCTGAAACGGTGTTATCTTACTTAGAGGAGAAAGGGTATCTGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

234

Amino Acids

26.08

Weight (kDa)

9.04

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	56 - 205	1.6e-70	Adenylylsulphate kinase
AAA_33	PF13671	59 - 171	2.3e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	5 cut(s)	7, 76, 92, 128, 377
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	4 cut(s)	336, 509, 522, 572
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	47, 319
AjiI	CACGTC	1 cut(s)	487
AluBI	AGCT	7 cut(s)	12, 40, 50, 259, 370, 535, 545
AluI	AGCT	7 cut(s)	12, 40, 50, 259, 370, 535, 545
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	643
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	4 cut(s)	336, 509, 522, 572
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	523, 699
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	3 cut(s)	9, 148, 616
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	427, 523
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	514
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BauI	CACGAG	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	21, 160, 628
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	4 cut(s)	7, 10, 149, 617
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	4 cut(s)	8, 11, 150, 618
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	427, 523
BmiI	GGNNCC	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	370, 396, 424
BmuI	ACTGGG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	4 cut(s)	623, 653, 674, 704
Bse1I	ACTGG	3 cut(s)	144, 193, 571
BseAI	TCCGGA	1 cut(s)	454
BseGI	GGATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	144, 193, 571
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	21, 160, 628
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	525, 701
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	2 cut(s)	525, 701
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	307, 328, 514, 577
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	5 cut(s)	7, 76, 92, 128, 377
BspANI	GGCC	2 cut(s)	525, 701
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	699
BspPI	GGATC	4 cut(s)	336, 509, 522, 572
BspT104I	TTCGAA	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	144, 193, 571
BssMI	GATC	4 cut(s)	307, 328, 514, 577
BssSI	CACGAG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	217, 664
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	5 cut(s)	242, 385, 439, 537, 699
BstDEI	CTNAG	4 cut(s)	194, 357, 366, 676
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	4 cut(s)	310, 331, 517, 580
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	307, 328, 514, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 443
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	21, 160, 628
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	525, 701
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	5 cut(s)	242, 385, 439, 537, 699
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	427, 523
CseI	GACGC	1 cut(s)	625
CviAII	CATG	2 cut(s)	293, 481
DdeI	CTNAG	4 cut(s)	194, 357, 366, 676
DpnI	GATC	4 cut(s)	309, 330, 516, 579
DpnII	GATC	4 cut(s)	307, 328, 514, 577
EciI	GGCGGA	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	2 cut(s)	296, 484
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	2 cut(s)	292, 480
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	3 cut(s)	179, 500, 583
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	7, 10, 149, 617
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	4 cut(s)	7, 10, 149, 617
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	7, 10, 149, 617
HaeIII	GGCC	2 cut(s)	525, 701
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	296, 484
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	38, 533
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	87, 155, 446
Hpy188I	TCNGA	2 cut(s)	59, 519
Hpy188III	TCNNGA	4 cut(s)	204, 272, 305, 455
Hpy8I	GTNNAC	3 cut(s)	87, 155, 446
HpyAV	CCTTC	4 cut(s)	452, 514, 616, 621
HpyCH4III	ACNGT	2 cut(s)	217, 664
HpyCH4IV	ACGT	2 cut(s)	285, 486
HpyCH4V	TGCA	6 cut(s)	244, 335, 446, 539, 616, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 443
HpyF3I	CTNAG	4 cut(s)	194, 357, 366, 676
HpySE526I	ACGT	2 cut(s)	285, 486
Hsp92II	CATG	2 cut(s)	296, 484
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	307, 328, 514, 577
Lsp1109I	GCAGC	3 cut(s)	21, 160, 628
LweI	GCATC	3 cut(s)	370, 396, 424
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	285, 486
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	309, 330, 516, 579
MboI	GATC	4 cut(s)	307, 328, 514, 577
MboII	GAAGA	2 cut(s)	93, 360
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	97, 351
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	6 cut(s)	245, 319, 352, 466, 536, 673
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	2 cut(s)	123, 485
MspI	CCGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	362, 443
NdeI	CATATG	3 cut(s)	179, 500, 583
NdeII	GATC	4 cut(s)	307, 328, 514, 577
NlaIII	CATG	2 cut(s)	296, 484
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	8, 11, 150, 618
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	427, 523
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	635
RseI	CAYNNNNRTG	2 cut(s)	123, 485
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	4 cut(s)	7, 10, 149, 617
Sau3AI	GATC	4 cut(s)	307, 328, 514, 577
Sau96I	GGNCC	2 cut(s)	427, 523
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	3 cut(s)	370, 396, 424
SfcI	CTRYAG	1 cut(s)	695
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	123, 485
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	97, 351
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	5 cut(s)	7, 76, 92, 128, 377
SspMI	CTAG	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	701
TaaI	ACNGT	2 cut(s)	217, 664
TaiI	ACGT	2 cut(s)	288, 489
TaqI	TCGA	2 cut(s)	86, 104
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	97, 351
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	9, 148, 616
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.