RLG00000017601

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000835
Physical Location & Seq
Forward (+)
18915122 .. 18915738
617 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017601

Sequence Viewer

Length: 534 bp
ATGCCTACCAAGTTCAAGCTATCTGTCCTCAACCATTTTAAGGCTATCTTGAAAATGATATTGGAGCTACAATTACAAAGACCCCCAATTATGAGACGCCTCAAATCGTGCCTCCAAAGAGTCTGCCTCCACCCATTTACAGATGTTCCACCACAACTGTTGCACGACCTCTTATGCTTGGTACCTCTTTCTGTCTCTAGAAAAGTGCCTTATGAGAATGAGGGGGCAGCAACGTCTTCATTGCTCAACAGTGGAGTGGCAAAAGTTTATTCCTCCAACAAGGGAATCTGTTTGAGTATACTCCCTCTTGTGTTCGATGCACTCAAAATTTTGATGGGGAAACCTGTACAAGAGGACAAGGGCTATATAGAAGAGGATATTAATGCCGCAGCACCTACATTCAACTTACTTGGTTATCACCGCACAAATGCTCCTGCTCTTAGCATAGACCTTGCATTTGAAGTTGTTTCAACAATGTTCGATAAATTAGGGGCATACACTTCTTACTTCATGAAGGGCACGCTGGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

178

Amino Acids

19.71

Weight (kDa)

8.87

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 298
AciI CCGC 2 cut(s) 387, 421
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 2 cut(s) 183, 348
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 5 cut(s) 16, 52, 403, 461, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 2 cut(s) 19, 67
AluI AGCT 2 cut(s) 19, 67
Alw26I GTCTC 2 cut(s) 88, 199
ApeKI GCWGC 2 cut(s) 227, 389
ApoI RAATTY 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AseI ATTAAT 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 239, 401
BccI CCATC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 88, 199
BfaI CTAG 2 cut(s) 198, 532
BisI GCNGC 3 cut(s) 228, 387, 390
BlsI GCNGC 3 cut(s) 229, 388, 391
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BsaHI GRCGYC 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 2 cut(s) 239, 401
BshNI GGYRCC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 88, 199
BsmBI CGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 521
Bsp1407I TGTACA 1 cut(s) 346
BspACI CCGC 2 cut(s) 387, 421
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 346
BssNAI GTATAC 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 97
Bst1107I GTATAC 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 159, 251
Bst6I CTCTTC 1 cut(s) 366
BstACI GRCGYC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 440
BstMAI GTCTC 2 cut(s) 88, 199
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 239, 401
BstV2I GAAGAC 1 cut(s) 228
BstZ17I GTATAC 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 510
CseI GACGC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 182, 347
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 1 cut(s) 511
CviJI RGCY 4 cut(s) 19, 44, 67, 363
CviKI_1 RGCY 4 cut(s) 19, 44, 67, 363
CviQI GTAC 2 cut(s) 182, 347
DdeI CTNAG 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 1 cut(s) 514
FaiI YATR 9 cut(s) 92, 175, 213, 299, 366, 368, 446, 496, 512
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 510
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 228, 387, 390
Fsp4HI GCNGC 3 cut(s) 228, 387, 390
FspBI CTAG 2 cut(s) 198, 532
GluI GCNGC 3 cut(s) 228, 387, 390
HgaI GACGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 1 cut(s) 514
HinfI GANTC 2 cut(s) 120, 285
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 299
Hpy188III TCNNGA 3 cut(s) 49, 198, 511
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 2 cut(s) 159, 251
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 163, 320, 455
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 1 cut(s) 514
KpnI GGTACC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 64, 436
LpnPI CCDG 3 cut(s) 357, 447, 509
Lsp1109I GCAGC 2 cut(s) 239, 401
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 198, 532
MaeII ACGT 1 cut(s) 233
MboII GAAGA 2 cut(s) 228, 383
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 4 cut(s) 71, 87, 327, 485
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 300
MseI TTAA 2 cut(s) 39, 381
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 1 cut(s) 183
PagI TCATGA 1 cut(s) 510
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 3 cut(s) 229, 388, 391
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 2 cut(s) 183, 348
RsaNI GTAC 2 cut(s) 182, 347
SaqAI TTAA 2 cut(s) 39, 381
SatI GCNGC 3 cut(s) 228, 387, 390
SchI GAGTC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 521
SetI ASST 8 cut(s) 21, 69, 171, 187, 236, 346, 397, 453
SfaNI GCATC 1 cut(s) 307
Sse9I AATT 4 cut(s) 71, 87, 327, 485
SsiI CCGC 2 cut(s) 387, 421
SspMI CTAG 2 cut(s) 198, 532
TaaI ACNGT 2 cut(s) 159, 251
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 315, 480
TasI AATT 4 cut(s) 71, 87, 327, 485
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 2 cut(s) 39, 381
Tru9I TTAA 2 cut(s) 39, 381
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 227, 389
TspDTI ATGAA 3 cut(s) 228, 499, 527
TspRI CASTG 1 cut(s) 256
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 2 cut(s) 198, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.