RLG00000016538

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000835
Physical Location & Seq
Forward (+)
7437893 .. 7440974
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016538

Sequence Viewer

Length: 1716 bp
ATGGAAACCCTAACCGTCGTAGACGCCGCCAACATCGGCGCCTCAATTCTCATGCGCTTCACCGACTCCAACCGCGAACTCGACCTCGAAATCCGCAAACTCATCGTCGTCATGTCCGGGGTATTCCGAGACCACAAGGCACCTCCGACGCCGGTGGACTACTTGGGCGCCACGTGCACCTCTCTCGACATCGCCACCGCCTCCATGCCCCAAGCTTCCGGTCACGTGCTCGACGCCCACCTCACGATTCTGTCCATCGTCATCCCAAAAGTCCCTGCTGCGTTTCTGATCAAGAATCTATGGCCGCTGTTTAATTCTATAGCACGACCTCTCCGGTCTTCGTCTCTGATTGACGAGAGTACCGGCTGCTTAGTAGTGAAATGCATAGCTGAAATCATCATTGCCGTCGCAAAAGTCGTCAACAATTGGTCAGATGTTTCAGAACTGTACAGCTTCTTCCTCAGCTTGGCTACCATTAAAGCCCTCGAGGTGAGAACGCAATTATGTTTGTGTCTTCCTGATGTACTGCAAAGATTTCAAGGAACACCGCTGTTTGAACCTGCAATCAAAAAGATTACCGACTTGCTGAATAAGTATCCTCCACTAGGGAAGCATGATGTAAAGGCTAGTGCATCTGTTCTCTCCCAAAAAGAGAAGGCCTGGTTTTCTTTGGATGTTGTGAAAGTATCTCTTTGCTTTATGTCAACCGAGGACAGAACTGCCATGCTCATCTACTTTAAATCTCTCTTGGAACTGAACCAATTCCCTGTTACAGCACGGATAGTTGATAGTTTGTATGGACTTTGTCTTGACCCATCTGCTGATGTTTCTCCTGAACTGTTGCTAGATTTAATACGCTCAATTTGTCTTTCTGTCACCCAACATAAGATGATGTACATCCCAGAAACTGCAGCTGGTTTGCTCAGTATTGGAGTGGTGAAAGTCTATTCCTTTAACCAGAAAATCTGTGAAACTAATCTCCCTATTGTGTTTGATGCACTCAAAGTTATATTGGGAGAGCCTAAAATAGACGACCTTCCTGATGCAGTGCATGCATTTAAGTGTCTAATTCATGCTTGTATTGATGAAAGCTTGATCAAAGAGGGAGTTGACTGTGTGGTGATGAATGCAAGTATGGATGATGGAAGCAAGTCTGAGCCAACTATAATTGAAAAATTGTGTGCTACTATTCAAAGCCTACTTGGTCATCGCAAAACTACCATCTGGGCCCTTGCTTTGGAAGTTGTTTCAACAATGTTCGATAAATTAGGGGCATACTCTTCTTATTTGATGAGGGGTACACTCAAGACCTTGGCAGACATGCAGAAATTGCCTGATCAAGAATTTACTTTCAAGGAAGAGGTTAAGCTTCTTCTAAAAATGCTTGTTGAGAAATGTGGGTTTGATGCTATAATGGCTGTCATGCCTCAAGAATACAAGAAACTGCTTCTAGAGATCAATGAAATGGGTTCTAAATCTGTGGAAGTGATATCTCATGCTTTGGAAGCAACTACAGTCAGGTATCACCTTTCTCGGTCCGAAAGTAGTGACAATCAAATGCATGATAAAGCACTTGGACCATGCAAGAATTCAAAACGGAAAATGGATGGTGGAGGTAATGAGTTTTGTGATCGGCACGCCAGGAGTATTGCTAAGAGGGAAATGACAAAAAGGATGTCAGGTGCAGCTCTGATGGCAAAGAAGCTAAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

572

Amino Acids

63.17

Weight (kDa)

6.86

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 7 - 276 6.2e-52 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 349 - 479 3.4e-18 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 485
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 3 cut(s) 38, 139, 167
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 75
AciI CCGC 6 cut(s) 27, 73, 94, 198, 305, 548
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 2 cut(s) 1343, 1588
AcvI CACGTG 2 cut(s) 174, 226
AcyI GRCGYC 5 cut(s) 24, 39, 149, 168, 234
AfaI GTAC 5 cut(s) 361, 449, 525, 896, 1300
AfiI CCNNNNNNNGG 3 cut(s) 466, 605, 1237
AgsI TTSAA 7 cut(s) 539, 557, 1172, 1193, 1251, 1354, 1593
AjnI CCWGG 2 cut(s) 659, 1640
AluBI AGCT 9 cut(s) 215, 389, 453, 465, 914, 1092, 1369, 1688, 1705
AluI AGCT 9 cut(s) 215, 389, 453, 465, 914, 1092, 1369, 1688, 1705
Alw21I GWGCWC 2 cut(s) 179, 231
Alw26I GTCTC 2 cut(s) 123, 348
Alw44I GTGCAC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 3 cut(s) 302, 657, 1227
ApaI GGGCCC 1 cut(s) 1231
ApaLI GTGCAC 1 cut(s) 175
ApeKI GCWGC 4 cut(s) 278, 366, 911, 1685
ApoI RAATTY 2 cut(s) 1343, 1588
ArsI GACNNNNNNTTYG 4 cut(s) 90, 122, 1661, 1693
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 3 cut(s) 41, 57, 170
AspS9I GGNCC 4 cut(s) 1227, 1228, 1536, 1577
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 6 cut(s) 52, 502, 868, 949, 1132, 1517
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 2 cut(s) 1536, 1577
BaeGI GKGCMC 2 cut(s) 179, 1231
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BanI GGYRCC 3 cut(s) 38, 139, 167
BanII GRGCYC 1 cut(s) 1231
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbrPI CACGTG 2 cut(s) 174, 226
BbsI GAAGAC 2 cut(s) 330, 506
Bbv12I GWGCWC 2 cut(s) 179, 231
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 4 cut(s) 265, 353, 923, 1697
BccI CCATC 6 cut(s) 263, 823, 1136, 1229, 1601, 1687
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 166, 200
BciT130I CCWGG 2 cut(s) 661, 1642
BciVI GTATCC 1 cut(s) 606
BclI TGATCA 3 cut(s) 288, 1095, 1336
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 123, 348
BfaI CTAG 5 cut(s) 605, 627, 845, 1451, 1714
BfmI CTRYAG 3 cut(s) 318, 909, 1512
BfoI RGCGCY 2 cut(s) 42, 171
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 6 cut(s) 27, 279, 305, 367, 912, 1686
BlsI GCNGC 6 cut(s) 28, 280, 306, 368, 913, 1687
Bme1390I CCNGG 3 cut(s) 118, 661, 1642
Bme18I GGWCC 2 cut(s) 1536, 1577
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 4 cut(s) 1227, 1228, 1536, 1577
BmiI GGNNCC 4 cut(s) 40, 141, 169, 1229
BmrFI CCNGG 3 cut(s) 118, 661, 1642
BmsI GCATC 4 cut(s) 641, 985, 1033, 1396
BpiI GAAGAC 2 cut(s) 330, 506
Bpu10I CCTNAGC 1 cut(s) 461
BpuEI CTTGAG 2 cut(s) 1289, 1413
BpuMI CCSGG 1 cut(s) 118
BsaAI YACGTR 2 cut(s) 174, 226
BsaBI GATNNNNATC 1 cut(s) 896
BsaHI GRCGYC 5 cut(s) 24, 39, 149, 168, 234
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 117, 708, 1311
BsaWI WCCGGW 2 cut(s) 218, 333
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 605, 1237
Bse118I RCCGGY 2 cut(s) 151, 362
Bse3DI GCAATG 1 cut(s) 399
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 2 cut(s) 661, 1642
BseDI CCNNGG 3 cut(s) 117, 708, 1311
BseGI GGATG 6 cut(s) 261, 679, 897, 1144, 1612, 1680
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 3 cut(s) 466, 605, 1237
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 3 cut(s) 475, 937, 1146
BseSI GKGCMC 2 cut(s) 179, 1231
BseXI GCAGC 4 cut(s) 265, 353, 923, 1697
BsgI GTGCAG 1 cut(s) 1704
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 304, 659, 1229
BshNI GGYRCC 3 cut(s) 38, 139, 167
BsiHKAI GWGCWC 2 cut(s) 179, 231
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 5 cut(s) 117, 152, 219, 334, 363
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 466, 605, 1237
BsmAI GTCTC 2 cut(s) 123, 348
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 3 cut(s) 304, 659, 1229
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 485
Bsp120I GGGCCC 1 cut(s) 1227
Bsp1286I GDGCHC 3 cut(s) 179, 231, 1231
Bsp1407I TGTACA 2 cut(s) 447, 894
Bsp143I GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
BspACI CCGC 6 cut(s) 27, 73, 94, 198, 305, 548
BspANI GGCC 3 cut(s) 304, 659, 1229
BspCNI CTCAG 3 cut(s) 474, 936, 1147
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 4 cut(s) 40, 141, 169, 1229
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 568
BspT107I GGYRCC 3 cut(s) 38, 139, 167
BspTNI GGTCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 2 cut(s) 151, 362
BsrGI TGTACA 2 cut(s) 447, 894
BssAI RCCGGY 2 cut(s) 151, 362
BssECI CCNNGG 3 cut(s) 117, 708, 1311
BssMI GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
BssNI GRCGYC 5 cut(s) 24, 39, 149, 168, 234
BssT1I CCWWGG 1 cut(s) 1311
Bst2UI CCWGG 2 cut(s) 661, 1642
Bst4CI ACNGT 5 cut(s) 16, 447, 840, 1115, 1516
Bst6I CTCTTC 2 cut(s) 1285, 1353
BstACI GRCGYC 5 cut(s) 24, 39, 149, 168, 234
BstAPI GCANNNNNTGC 2 cut(s) 1052, 1330
BstAUI TGTACA 2 cut(s) 447, 894
BstBAI YACGTR 2 cut(s) 174, 226
BstC8I GCNNGC 2 cut(s) 1053, 1638
BstDEI CTNAG 5 cut(s) 370, 461, 923, 1155, 1653
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 6 cut(s) 261, 679, 897, 1144, 1612, 1680
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 42, 171
BstHHI GCGC 3 cut(s) 41, 57, 170
BstKTI GATC 5 cut(s) 291, 1098, 1339, 1458, 1633
BstMAI GTCTC 2 cut(s) 123, 348
BstMBI GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
BstMWI GCNNNNNNNGC 6 cut(s) 174, 1052, 1330, 1415, 1505, 1694
BstNI CCWGG 2 cut(s) 661, 1642
BstNSI RCATGY 2 cut(s) 1055, 1324
BstSCI CCNGG 3 cut(s) 116, 659, 1640
BstSFI CTRYAG 3 cut(s) 318, 909, 1512
BstSLI GKGCMC 2 cut(s) 179, 1231
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 4 cut(s) 265, 353, 923, 1697
BstV2I GAAGAC 2 cut(s) 330, 506
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 3 cut(s) 304, 659, 1229
BtgZI GCGATG 2 cut(s) 175, 1193
BtsCI GGATG 6 cut(s) 261, 679, 897, 1144, 1612, 1680
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 1 cut(s) 1053
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 1053, 1638
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 3 cut(s) 41, 57, 170
Cfr10I RCCGGY 2 cut(s) 151, 362
Cfr13I GGNCC 4 cut(s) 1227, 1228, 1536, 1577
CpoI CGGWCCG 1 cut(s) 1536
CseI GACGC 3 cut(s) 32, 157, 242
Csp6I GTAC 5 cut(s) 360, 448, 524, 895, 1299
CspI CGGWCCG 1 cut(s) 1536
CviQI GTAC 5 cut(s) 360, 448, 524, 895, 1299
DdeI CTNAG 5 cut(s) 370, 461, 923, 1155, 1653
DinI GGCGCC 2 cut(s) 40, 169
DpnI GATC 5 cut(s) 290, 1097, 1338, 1457, 1632
DpnII GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
DraI TTTAAA 1 cut(s) 739
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 1285, 1353
EarI CTCTTC 2 cut(s) 1285, 1353
Eco130I CCWWGG 1 cut(s) 1311
Eco147I AGGCCT 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 1231
Eco31I GGTCTC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 1491
Eco47I GGWCC 2 cut(s) 1536, 1577
Eco72I CACGTG 2 cut(s) 174, 226
Eco88I CYCGRG 1 cut(s) 485
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 1228
EcoRI GAATTC 1 cut(s) 1588
EcoRII CCWGG 2 cut(s) 659, 1640
EcoRV GATATC 1 cut(s) 1491
EcoT14I CCWWGG 1 cut(s) 1311
EcoT22I ATGCAT 3 cut(s) 386, 1057, 1563
EcoT38I GRGCYC 1 cut(s) 1231
EgeI GGCGCC 2 cut(s) 40, 169
EheI GGCGCC 2 cut(s) 40, 169
ErhI CCWWGG 1 cut(s) 1311
Esp3I CGTCTC 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FaqI GGGAC 1 cut(s) 257
FbaI TGATCA 3 cut(s) 288, 1095, 1336
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 6 cut(s) 27, 279, 305, 367, 912, 1686
FokI GGATG 6 cut(s) 248, 686, 884, 1151, 1619, 1687
FriOI GRGCYC 1 cut(s) 1231
Fsp4HI GCNGC 6 cut(s) 27, 279, 305, 367, 912, 1686
FspBI CTAG 5 cut(s) 605, 627, 845, 1451, 1714
GlaI GCGC 3 cut(s) 40, 56, 169
GluI GCNGC 6 cut(s) 27, 279, 305, 367, 912, 1686
HaeII RGCGCY 2 cut(s) 42, 171
HaeIII GGCC 3 cut(s) 304, 659, 1229
HapII CCGG 5 cut(s) 117, 152, 219, 334, 363
HgaI GACGC 3 cut(s) 32, 157, 242
HhaI GCGC 3 cut(s) 41, 57, 170
Hin1I GRCGYC 5 cut(s) 24, 39, 149, 168, 234
Hin6I GCGC 3 cut(s) 39, 55, 168
HinP1I GCGC 3 cut(s) 39, 55, 168
HincII GTYRAC 3 cut(s) 421, 705, 1111
HindII GTYRAC 3 cut(s) 421, 705, 1111
HindIII AAGCTT 3 cut(s) 213, 1090, 1367
HinfI GANTC 3 cut(s) 65, 247, 295
HpaII CCGG 5 cut(s) 117, 152, 219, 334, 363
HphI GGTGA 6 cut(s) 52, 502, 868, 949, 1132, 1517
Hpy166II GTNNAC 7 cut(s) 22, 157, 177, 421, 705, 1111, 1301
Hpy188I TCNGA 9 cut(s) 128, 147, 288, 348, 433, 442, 1156, 1540, 1692
Hpy8I GTNNAC 7 cut(s) 22, 157, 177, 421, 705, 1111, 1301
Hpy99I CGWCG 5 cut(s) 20, 110, 151, 236, 410
HpyAV CCTTC 2 cut(s) 649, 1046
HpyCH4III ACNGT 5 cut(s) 16, 447, 840, 1115, 1516
HpyCH4IV ACGT 2 cut(s) 173, 225
HpyF10VI GCNNNNNNNGC 6 cut(s) 174, 1052, 1330, 1415, 1505, 1694
HpyF3I CTNAG 5 cut(s) 370, 461, 923, 1155, 1653
HpySE526I ACGT 2 cut(s) 173, 225
Hsp92I GRCGYC 5 cut(s) 24, 39, 149, 168, 234
HspAI GCGC 3 cut(s) 39, 55, 168
KasI GGCGCC 2 cut(s) 38, 167
Ksp22I TGATCA 3 cut(s) 288, 1095, 1336
Kzo9I GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
Lsp1109I GCAGC 4 cut(s) 265, 353, 923, 1697
LweI GCATC 4 cut(s) 641, 985, 1033, 1396
MaeI CTAG 5 cut(s) 605, 627, 845, 1451, 1714
MaeII ACGT 2 cut(s) 173, 225
MaeIII GTNAC 4 cut(s) 221, 769, 874, 1547
MalI GATC 5 cut(s) 290, 1097, 1338, 1457, 1632
MboI GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
MboII GAAGA 6 cut(s) 330, 448, 506, 1272, 1364, 1370
MfeI CAATTG 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 179, 231, 1231
Mly113I GGCGCC 2 cut(s) 39, 168
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 93, 170
Mph1103I ATGCAT 3 cut(s) 386, 1057, 1563
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 7 cut(s) 312, 477, 738, 851, 954, 1059, 1365
MslI CAYNNNNRTG 1 cut(s) 1060
MspA1I CMGCKG 3 cut(s) 307, 550, 914
MspI CCGG 5 cut(s) 117, 152, 219, 334, 363
MspR9I CCNGG 3 cut(s) 118, 661, 1642
MunI CAATTG 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 2 cut(s) 661, 1642
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 174, 1052, 1330, 1415, 1505, 1694
NarI GGCGCC 2 cut(s) 39, 168
NciI CCSGG 1 cut(s) 118
NdeII GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
NlaIV GGNNCC 4 cut(s) 40, 141, 169, 1229
NmuCI GTSAC 3 cut(s) 221, 874, 1547
NsiI ATGCAT 3 cut(s) 386, 1057, 1563
NspI RCATGY 2 cut(s) 1055, 1324
PaeI GCATGC 1 cut(s) 1055
PaeR7I CTCGAG 1 cut(s) 485
PceI AGGCCT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 2 cut(s) 247, 295
PflFI GACNNNGTC 1 cut(s) 804
PkrI GCNGC 6 cut(s) 28, 280, 306, 368, 913, 1687
PleI GAGTC 1 cut(s) 59
PluTI GGCGCC 2 cut(s) 42, 171
PmaCI CACGTG 2 cut(s) 174, 226
PmlI CACGTG 2 cut(s) 174, 226
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 2 cut(s) 174, 226
Psp6I CCWGG 2 cut(s) 659, 1640
PspCI CACGTG 2 cut(s) 174, 226
PspGI CCWGG 2 cut(s) 659, 1640
PspN4I GGNNCC 4 cut(s) 40, 141, 169, 1229
PspOMI GGGCCC 1 cut(s) 1227
PspPI GGNCC 4 cut(s) 1227, 1228, 1536, 1577
PspXI VCTCGAGB 1 cut(s) 485
PstI CTGCAG 1 cut(s) 913
PstNI CAGNNNCTG 1 cut(s) 908
PsyI GACNNNGTC 1 cut(s) 804
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 5 cut(s) 361, 449, 525, 896, 1300
RsaNI GTAC 5 cut(s) 360, 448, 524, 895, 1299
RseI CAYNNNNRTG 1 cut(s) 1060
Rsr2I CGGWCCG 1 cut(s) 1536
RsrII CGGWCCG 1 cut(s) 1536
SaqAI TTAA 7 cut(s) 312, 477, 738, 851, 954, 1059, 1365
SatI GCNGC 6 cut(s) 27, 279, 305, 367, 912, 1686
Sau3AI GATC 5 cut(s) 288, 1095, 1336, 1455, 1630
Sau96I GGNCC 4 cut(s) 1227, 1228, 1536, 1577
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 118, 661, 1642
SduI GDGCHC 3 cut(s) 179, 231, 1231
SfaNI GCATC 4 cut(s) 641, 985, 1033, 1396
SfcI CTRYAG 3 cut(s) 318, 909, 1512
SfoI GGCGCC 2 cut(s) 40, 169
Sfr274I CTCGAG 1 cut(s) 485
SgrAI CRCCGGYG 1 cut(s) 151
SinI GGWCC 2 cut(s) 1536, 1577
SlaI CTCGAG 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 1060
SmlI CTYRAG 3 cut(s) 485, 1304, 1428
SmoI CTYRAG 3 cut(s) 485, 1304, 1428
SphI GCATGC 1 cut(s) 1055
SseBI AGGCCT 1 cut(s) 659
SsiI CCGC 6 cut(s) 27, 73, 94, 198, 305, 548
SspDI GGCGCC 2 cut(s) 38, 167
SspMI CTAG 5 cut(s) 605, 627, 845, 1451, 1714
StuI AGGCCT 1 cut(s) 659
StyD4I CCNGG 3 cut(s) 116, 659, 1640
StyI CCWWGG 1 cut(s) 1311
TaaI ACNGT 5 cut(s) 16, 447, 840, 1115, 1516
TaiI ACGT 2 cut(s) 176, 228
TaqI TCGA 6 cut(s) 81, 87, 186, 231, 486, 1260
TaqII GACCGA 1 cut(s) 1524
TatI WGTACW 3 cut(s) 447, 523, 894
TauI GCSGC 2 cut(s) 29, 307
TfiI GAWTC 2 cut(s) 247, 295
Tru1I TTAA 7 cut(s) 312, 477, 738, 851, 954, 1059, 1365
Tru9I TTAA 7 cut(s) 312, 477, 738, 851, 954, 1059, 1365
TscAI CASTG 1 cut(s) 1053
TseFI GTSAC 3 cut(s) 221, 874, 1547
TseI GCWGC 4 cut(s) 278, 366, 911, 1685
Tsp45I GTSAC 3 cut(s) 221, 874, 1547
TspDTI ATGAA 4 cut(s) 1061, 1101, 1139, 1476
TspGWI ACGGA 2 cut(s) 793, 1612
TspRI CASTG 1 cut(s) 1053
Tth111I GACNNNGTC 1 cut(s) 804
VneI GTGCAC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 1536, 1577
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 2 cut(s) 1343, 1588
XbaI TCTAGA 1 cut(s) 1450
XceI RCATGY 2 cut(s) 1055, 1324
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 5 cut(s) 605, 627, 845, 1451, 1714
Zsp2I ATGCAT 3 cut(s) 386, 1057, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.