RLG00000018152

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000835
Physical Location & Seq
Forward (+)
26155399 .. 26156346
948 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018152

Sequence Viewer

Length: 849 bp
ATGCCTACCAAGTTCAAGATAGCAGTTCTCAACTACTTTAAGGCTATCTTCGAACTCATCTTGGAACTAGAAGCGCATAGAACCCCTGTTACGGTGCGCCTGGAGTGGTGCCTTCAAAGAGTCTGCCTCCACCCATCTACAGATGTTCCACCACAGCTGTTGCTCGACCTTTTATGCTTGGTATCTAATTCTATCTCTAGAAAAGTTCCACATGCGCATAAGGGGGCAACAACGTCCTCATTGCTCAATAGTGGAGTGGCAAAAGTTTATTCCTCCAACAGGGGAATCTGTATGAGTAAACTCCCTCTTGTGTTTGATGCACTCAAAATTTTGATGGGGAAACCTGTACAAGAGGATGACGGCAATATAGAAGAGGACATTGACGCAGCAGCAAATGCATTTAAGTGTGTCATTCATGCTTGTGTTGATCAAGGCTTGATCAAACAAGGAGTTGACCAGATCGGTGCCATTGCAAACAACATGGACCTTGCATTTGAAGTTGTTTCGACAATGTTCGATAAATTAGGGGCATATGCTTCTTATTTCATGAGAGGTTCACTGGAGAGGTTGGCAGACATGCACAAGTTGCCTGATGAAGAATTCCCTTTCAGGAAGCAGGCTACACTTCTTCTAGGATCCCTTGTCGAGGAGAAATGTGGGCTTCATGATGATATCAATATTAGGGCTGTCCTGCCTCAAGAACAACTCATGGCACTGGTTGAAGATTACAGGGGCCTTAAGTCCCAAAAAAAGTCAGAACTTTCTCATCGAAAACGGAAGATGGGGTTGAATATTGGGTCCCCCCCCAGGAAGGTTGCCATACGATTGTTCACCAGAGATGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

283

Amino Acids

31.43

Weight (kDa)

8.11

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 108, 464
AclWI GGATC 2 cut(s) 630, 643
AcsI RAATTY 2 cut(s) 327, 599
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 5 cut(s) 91, 279, 646, 807, 811
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 5 cut(s) 16, 116, 497, 722, 790
AjnI CCWGG 2 cut(s) 99, 806
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AlwI GGATC 2 cut(s) 630, 643
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 2 cut(s) 386, 389
ApoI RAATTY 2 cut(s) 327, 599
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspLEI GCGC 3 cut(s) 76, 99, 217
AspS9I GGNCC 3 cut(s) 484, 733, 798
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 484, 798
BamHI GGATCC 1 cut(s) 635
BanI GGYRCC 2 cut(s) 108, 464
BbvI GCAGC 2 cut(s) 398, 401
BccI CCATC 4 cut(s) 142, 328, 775, 836
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 101, 808
BclI TGATCA 2 cut(s) 427, 438
BfaI CTAG 3 cut(s) 68, 198, 632
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 2 cut(s) 387, 390
BlsI GCNGC 2 cut(s) 388, 391
Bme1390I CCNGG 2 cut(s) 101, 808
Bme18I GGWCC 2 cut(s) 484, 798
BmgT120I GGNCC 3 cut(s) 484, 733, 798
BmiI GGNNCC 6 cut(s) 110, 466, 637, 734, 799, 800
BmrFI CCNGG 2 cut(s) 101, 808
BmsI GCATC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 2 cut(s) 122, 581
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 279, 646, 807, 811
Bse1I ACTGG 2 cut(s) 564, 720
Bse3DI GCAATG 2 cut(s) 239, 468
BseBI CCWGG 2 cut(s) 101, 808
BseDI CCNNGG 1 cut(s) 806
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 5 cut(s) 91, 279, 646, 807, 811
BseMI GCAATG 2 cut(s) 239, 468
BseNI ACTGG 2 cut(s) 564, 720
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 398, 401
BshFI GGCC 1 cut(s) 735
BshNI GGYRCC 2 cut(s) 108, 464
BslFI GGGAC 2 cut(s) 727, 784
BslI CCNNNNNNNGG 5 cut(s) 91, 279, 646, 807, 811
BsmFI GGGAC 2 cut(s) 727, 784
BsnI GGCC 1 cut(s) 735
Bsp119I TTCGAA 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 427, 438, 459, 635
BspANI GGCC 1 cut(s) 735
BspHI TCATGA 2 cut(s) 546, 664
BspLI GGNNCC 6 cut(s) 110, 466, 637, 734, 799, 800
BspPI GGATC 2 cut(s) 630, 643
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 108, 464
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 239, 468
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 2 cut(s) 564, 720
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 4 cut(s) 427, 438, 459, 635
Bst2UI CCWGG 2 cut(s) 101, 808
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 2 cut(s) 395, 586
BstAUI TGTACA 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 618
BstENI CCTNNNNNAGG 2 cut(s) 277, 644
BstF5I GGATG 1 cut(s) 361
BstHHI GCGC 3 cut(s) 76, 99, 217
BstKTI GATC 4 cut(s) 430, 441, 462, 638
BstMBI GATC 4 cut(s) 427, 438, 459, 635
BstMWI GCNNNNNNNGC 2 cut(s) 395, 586
BstNI CCWGG 2 cut(s) 101, 808
BstNSI RCATGY 2 cut(s) 215, 580
BstSCI CCNGG 2 cut(s) 99, 806
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 398, 401
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuRI GGCC 1 cut(s) 735
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 557, 713
Cac8I GCNNGC 1 cut(s) 618
CciI TCATGA 2 cut(s) 546, 664
CfoI GCGC 3 cut(s) 76, 99, 217
Cfr13I GGNCC 3 cut(s) 484, 733, 798
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 212, 416, 481, 547, 577, 665, 709
CviJI RGCY 8 cut(s) 44, 157, 435, 620, 661, 686, 735, 846
CviKI_1 RGCY 8 cut(s) 44, 157, 435, 620, 661, 686, 735, 846
CviQI GTAC 1 cut(s) 347
DpnI GATC 4 cut(s) 429, 440, 461, 637
DpnII GATC 4 cut(s) 427, 438, 459, 635
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 484, 798
EcoNI CCTNNNNNAGG 2 cut(s) 277, 644
EcoO109I RGGNCCY 2 cut(s) 733, 798
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 99, 806
EcoRV GATATC 1 cut(s) 673
EcoT22I ATGCAT 1 cut(s) 400
FaeI CATG 7 cut(s) 215, 419, 484, 550, 580, 668, 712
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 2 cut(s) 727, 784
FatI CATG 7 cut(s) 211, 415, 480, 546, 576, 664, 708
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 2 cut(s) 427, 438
Fnu4HI GCNGC 2 cut(s) 387, 390
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 387, 390
FspAI RTGCGCAY 1 cut(s) 216
FspBI CTAG 3 cut(s) 68, 198, 632
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 3 cut(s) 75, 98, 216
GluI GCNGC 2 cut(s) 387, 390
GsuI CTGGAG 2 cut(s) 122, 581
HaeIII GGCC 1 cut(s) 735
HgaI GACGC 1 cut(s) 392
HhaI GCGC 3 cut(s) 76, 99, 217
Hin1II CATG 7 cut(s) 215, 419, 484, 550, 580, 668, 712
Hin6I GCGC 3 cut(s) 74, 97, 215
HinP1I GCGC 3 cut(s) 74, 97, 215
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 2 cut(s) 120, 285
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 4 cut(s) 299, 454, 557, 831
Hpy188I TCNGA 1 cut(s) 757
Hpy188III TCNNGA 6 cut(s) 16, 198, 547, 610, 665, 698
Hpy8I GTNNAC 4 cut(s) 299, 454, 557, 831
HpyAV CCTTC 2 cut(s) 122, 805
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 320, 398, 473, 491, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 586
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 7 cut(s) 215, 419, 484, 550, 580, 668, 712
HspAI GCGC 3 cut(s) 74, 97, 215
KflI GGGWCCC 1 cut(s) 798
Ksp22I TGATCA 2 cut(s) 427, 438
Kzo9I GATC 4 cut(s) 427, 438, 459, 635
Lsp1109I GCAGC 2 cut(s) 398, 401
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 68, 198, 632
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 88
MalI GATC 4 cut(s) 429, 440, 461, 637
MboI GATC 4 cut(s) 427, 438, 459, 635
MboII GAAGA 6 cut(s) 40, 383, 608, 620, 734, 790
MflI RGATCY 1 cut(s) 635
MluCI AATT 4 cut(s) 187, 327, 521, 599
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 3 cut(s) 39, 402, 738
MslI CAYNNNNRTG 2 cut(s) 403, 420
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 737
MspR9I CCNGG 2 cut(s) 101, 808
MvaI CCWGG 2 cut(s) 101, 808
MwoI GCNNNNNNNGC 2 cut(s) 395, 586
NdeI CATATG 1 cut(s) 532
NdeII GATC 4 cut(s) 427, 438, 459, 635
NlaIII CATG 7 cut(s) 215, 419, 484, 550, 580, 668, 712
NlaIV GGNNCC 6 cut(s) 110, 466, 637, 734, 799, 800
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 215, 580
NspV TTCGAA 1 cut(s) 51
PagI TCATGA 2 cut(s) 546, 664
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 2 cut(s) 388, 391
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 798
Psp5II RGGWCCY 1 cut(s) 798
Psp6I CCWGG 2 cut(s) 99, 806
PspGI CCWGG 2 cut(s) 99, 806
PspN4I GGNNCC 6 cut(s) 110, 466, 637, 734, 799, 800
PspPI GGNCC 3 cut(s) 484, 733, 798
PspPPI RGGWCCY 1 cut(s) 798
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PsuI RGATCY 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 403, 420
SaqAI TTAA 3 cut(s) 39, 402, 738
SatI GCNGC 2 cut(s) 387, 390
Sau3AI GATC 4 cut(s) 427, 438, 459, 635
Sau96I GGNCC 3 cut(s) 484, 733, 798
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 101, 808
SetI ASST 8 cut(s) 159, 171, 236, 346, 489, 556, 569, 816
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 2 cut(s) 484, 798
SmiMI CAYNNNNRTG 2 cut(s) 403, 420
SmlI CTYRAG 2 cut(s) 696, 737
SmoI CTYRAG 2 cut(s) 696, 737
Sse9I AATT 4 cut(s) 187, 327, 521, 599
SspI AATATT 2 cut(s) 679, 793
SspMI CTAG 3 cut(s) 68, 198, 632
StyD4I CCNGG 2 cut(s) 99, 806
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 236
TaqI TCGA 6 cut(s) 51, 165, 506, 516, 645, 769
TasI AATT 4 cut(s) 187, 327, 521, 599
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 3 cut(s) 39, 402, 738
Tru9I TTAA 3 cut(s) 39, 402, 738
TscAI CASTG 2 cut(s) 564, 720
TseI GCWGC 2 cut(s) 386, 389
TspDTI ATGAA 4 cut(s) 404, 535, 609, 653
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 2 cut(s) 564, 720
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 484, 798
XagI CCTNNNNNAGG 2 cut(s) 277, 644
XapI RAATTY 2 cut(s) 327, 599
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 2 cut(s) 215, 580
XspI CTAG 3 cut(s) 68, 198, 632
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.