Rh2DG094300

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000835
Physical Location & Seq
Forward (+)
7409931 .. 7410920
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG094300.1

Sequence Viewer

Length: 813 bp
ATGGAAACCCTAAACCCCACCACCAGCACCACCGTGGACGACGGCGTGGCGAACATCGGCTTCTCAATCCTGATGCGCTTCTCTGACAGCCGTCGCGAAATCGACCTCGAAATCCGCAAGCTCATAACCGTCATGTGCCAGGTATTCCGAGACCACAAGGCTCCTCCGACGCCGCTGGCCTACTTGGGCGCCACGTGCTCCTCTCTCGACCTGATCGCCGCTTCGAAGCCCCGACCTTCCGATGACGTGCTCCGCGCCCACCTCATAATTCTGTCCATCGTCATCCCCAAAGTCCCGCCAGCATTTCTCATCAACAATCTCCAGTTGGTCTGCAATTCCTTAGCCCCAGCTCTTCGTTCTTCATCCCCAAGCTTCGACGGTGCAGCCTGCACAGGAGTTAAATGCATAGCTCAATTGCTCATTAGCAGCACTAACTGCGTCAACAACTGGTCACAAGTTTCGAAACCCTTCAGGCTCTTGTTCAGATTCGCTTATGTCTCCAGCATCGAGGTAAGAGAACAAGCAGGTTTGTGTGTTCACGACACACTGCAAAGTTTTCGAGGAACTCCCCTGTTTGGCCCTGCAAGTAAAACCATTACTGACTTGTTAATGAAAAAGTATCCTCCGCCACGTGTGGAATCAAATACTGATGGAGTTAATAGCATCGAACAACGCAAGGCCATGCATACTTTGAATCTTGTGATGCTATCCCTTGGCGCTATGTCAACCGAGGACAGAACTGCTGTGCTCGTCTACTTTATGGATCTCTTAGAACTGCGCCATACCTTTGAATCTTGTGATGCTATCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

270

Amino Acids

29.69

Weight (kDa)

7.58

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 10 - 262 6e-50 RRP12-like, N-terminal HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 753
AccII CGCG 2 cut(s) 96, 255
AciI CCGC 6 cut(s) 115, 173, 219, 253, 296, 626
AclWI GGATC 1 cut(s) 771
AcuI CTGAAG 1 cut(s) 454
AcvI CACGTG 2 cut(s) 195, 632
AcyI GRCGYC 2 cut(s) 170, 189
AfiI CCNNNNNNNGG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 2 cut(s) 694, 791
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 138
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 4 cut(s) 121, 350, 372, 410
AluI AGCT 4 cut(s) 121, 350, 372, 410
Alw21I GWGCWC 3 cut(s) 200, 252, 750
Alw26I GTCTC 2 cut(s) 144, 502
AlwI GGATC 1 cut(s) 771
AoxI GGCC 3 cut(s) 177, 577, 678
ApeKI GCWGC 2 cut(s) 383, 426
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 5 cut(s) 78, 191, 257, 719, 780
AspS9I GGNCC 1 cut(s) 578
AsuII TTCGAA 2 cut(s) 224, 461
BanI GGYRCC 1 cut(s) 188
BbrPI CACGTG 2 cut(s) 195, 632
Bbv12I GWGCWC 3 cut(s) 200, 252, 750
BbvI GCAGC 2 cut(s) 395, 438
BccI CCATC 2 cut(s) 284, 644
BceAI ACGGC 2 cut(s) 58, 75
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 144, 502
BfoI RGCGCY 2 cut(s) 192, 720
BfuAI ACCTGC 1 cut(s) 515
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 4 cut(s) 173, 219, 384, 427
BlsI GCNGC 4 cut(s) 174, 220, 385, 428
Bme1390I CCNGG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 2 cut(s) 162, 190
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 5 cut(s) 63, 513, 672, 693, 790
BoxI GACNNNNGTC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 305, 484
Bpu10I CCTNAGC 1 cut(s) 340
Bpu14I TTCGAA 2 cut(s) 224, 461
BsaAI YACGTR 2 cut(s) 195, 632
BsaHI GRCGYC 2 cut(s) 170, 189
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 33, 712, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 2 cut(s) 322, 452
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 33, 712, 729
BseGI GGATG 2 cut(s) 282, 362
BseLI CCNNNNNNNGG 1 cut(s) 575
BseNI ACTGG 2 cut(s) 322, 452
BseRI GAGGAG 2 cut(s) 153, 190
BseXI GCAGC 2 cut(s) 395, 438
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 373, 402
Bsh1236I CGCG 2 cut(s) 96, 255
BshFI GGCC 3 cut(s) 179, 579, 680
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 3 cut(s) 200, 252, 750
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 2 cut(s) 144, 502
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 179, 579, 680
Bso31I GGTCTC 1 cut(s) 144
Bsp119I TTCGAA 2 cut(s) 224, 461
Bsp1286I GDGCHC 3 cut(s) 200, 252, 750
Bsp143I GATC 2 cut(s) 213, 763
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 6 cut(s) 115, 173, 219, 253, 296, 626
BspANI GGCC 3 cut(s) 179, 579, 680
BspFNI CGCG 2 cut(s) 96, 255
BspLI GGNNCC 2 cut(s) 162, 190
BspMI ACCTGC 1 cut(s) 515
BspPI GGATC 1 cut(s) 771
BspQI GCTCTTC 1 cut(s) 357
BspT104I TTCGAA 2 cut(s) 224, 461
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 322, 452
BssECI CCNNGG 3 cut(s) 33, 712, 729
BssMI GATC 2 cut(s) 213, 763
BssNI GRCGYC 2 cut(s) 170, 189
BssT1I CCWWGG 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 34, 130, 380
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 2 cut(s) 170, 189
BstAPI GCANNNNNTGC 1 cut(s) 435
BstBAI YACGTR 2 cut(s) 195, 632
BstBI TTCGAA 2 cut(s) 224, 461
BstC8I GCNNGC 4 cut(s) 119, 177, 300, 388
BstDEI CTNAG 2 cut(s) 340, 769
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 282, 362
BstFNI CGCG 2 cut(s) 96, 255
BstH2I RGCGCY 2 cut(s) 192, 720
BstHHI GCGC 5 cut(s) 78, 191, 257, 719, 780
BstKTI GATC 2 cut(s) 216, 766
BstMAI GTCTC 2 cut(s) 144, 502
BstMBI GATC 2 cut(s) 213, 763
BstMWI GCNNNNNNNGC 2 cut(s) 195, 435
BstNI CCWGG 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 138
BstUI CGCG 2 cut(s) 96, 255
BstV1I GCAGC 2 cut(s) 395, 438
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 3 cut(s) 179, 579, 680
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 282, 362
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 545
BtuMI TCGCGA 1 cut(s) 96
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 4 cut(s) 119, 177, 300, 388
CfoI GCGC 5 cut(s) 78, 191, 257, 719, 780
Cfr13I GGNCC 1 cut(s) 578
CseI GACGC 2 cut(s) 178, 427
CviAII CATG 2 cut(s) 133, 682
DdeI CTNAG 2 cut(s) 340, 769
DinI GGCGCC 1 cut(s) 190
DpnI GATC 2 cut(s) 215, 765
DpnII GATC 2 cut(s) 213, 763
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 712
Eco31I GGTCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 454
Eco72I CACGTG 2 cut(s) 195, 632
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 712
EcoT22I ATGCAT 2 cut(s) 407, 687
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 2 cut(s) 136, 685
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 132, 681
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 173, 219, 384, 427
FokI GGATG 2 cut(s) 269, 349
Fsp4HI GCNGC 4 cut(s) 173, 219, 384, 427
GlaI GCGC 5 cut(s) 77, 190, 256, 718, 779
GluI GCNGC 4 cut(s) 173, 219, 384, 427
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 2 cut(s) 305, 484
HaeII RGCGCY 2 cut(s) 192, 720
HaeIII GGCC 3 cut(s) 179, 579, 680
HgaI GACGC 2 cut(s) 178, 427
HhaI GCGC 5 cut(s) 78, 191, 257, 719, 780
Hin1I GRCGYC 2 cut(s) 170, 189
Hin1II CATG 2 cut(s) 136, 685
Hin6I GCGC 5 cut(s) 76, 189, 255, 717, 778
HinP1I GCGC 5 cut(s) 76, 189, 255, 717, 778
HincII GTYRAC 2 cut(s) 442, 726
HindII GTYRAC 2 cut(s) 442, 726
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 4 cut(s) 486, 638, 694, 791
Hpy166II GTNNAC 5 cut(s) 37, 442, 538, 726, 754
Hpy188I TCNGA 5 cut(s) 85, 149, 168, 241, 485
Hpy188III TCNNGA 4 cut(s) 70, 95, 206, 539
Hpy8I GTNNAC 5 cut(s) 37, 442, 538, 726, 754
Hpy99I CGWCG 4 cut(s) 44, 96, 172, 380
HpyAV CCTTC 2 cut(s) 246, 478
HpyCH4III ACNGT 3 cut(s) 34, 130, 380
HpyCH4IV ACGT 3 cut(s) 194, 246, 631
HpyCH4V TGCA 7 cut(s) 333, 383, 390, 405, 550, 584, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 435
HpyF3I CTNAG 2 cut(s) 340, 769
HpySE526I ACGT 3 cut(s) 194, 246, 631
Hsp92I GRCGYC 2 cut(s) 170, 189
Hsp92II CATG 2 cut(s) 136, 685
HspAI GCGC 5 cut(s) 76, 189, 255, 717, 778
KasI GGCGCC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 213, 763
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 3 cut(s) 166, 203, 255
Lsp1109I GCAGC 2 cut(s) 395, 438
LweI GCATC 5 cut(s) 63, 513, 672, 693, 790
MaeII ACGT 3 cut(s) 194, 246, 631
MaeIII GTNAC 1 cut(s) 450
MalI GATC 2 cut(s) 215, 765
MboI GATC 2 cut(s) 213, 763
MboII GAAGA 2 cut(s) 344, 351
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 3 cut(s) 200, 252, 750
MluCI AATT 3 cut(s) 267, 334, 413
Mly113I GGCGCC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 8 cut(s) 116, 174, 211, 272, 502, 554, 633, 724
Mph1103I ATGCAT 2 cut(s) 407, 687
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 3 cut(s) 399, 608, 657
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 2 cut(s) 96, 255
MwoI GCNNNNNNNGC 2 cut(s) 195, 435
NarI GGCGCC 1 cut(s) 189
NdeII GATC 2 cut(s) 213, 763
NlaIII CATG 2 cut(s) 136, 685
NlaIV GGNNCC 2 cut(s) 162, 190
NmuCI GTSAC 1 cut(s) 450
NruI TCGCGA 1 cut(s) 96
NsiI ATGCAT 2 cut(s) 407, 687
NspV TTCGAA 2 cut(s) 224, 461
OliI CACNNNNGTG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 4 cut(s) 486, 638, 694, 791
PkrI GCNGC 4 cut(s) 174, 220, 385, 428
PluTI GGCGCC 1 cut(s) 192
PmaCI CACGTG 2 cut(s) 195, 632
PmlI CACGTG 2 cut(s) 195, 632
Ppu21I YACGTR 2 cut(s) 195, 632
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 138
PspCI CACGTG 2 cut(s) 195, 632
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 162, 190
PspPI GGNCC 1 cut(s) 578
PsuI RGATCY 1 cut(s) 763
RruI TCGCGA 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 399, 608, 657
SatI GCNGC 4 cut(s) 173, 219, 384, 427
Sau3AI GATC 2 cut(s) 213, 763
Sau96I GGNCC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 3 cut(s) 200, 252, 750
SfaNI GCATC 5 cut(s) 63, 513, 672, 693, 790
SfoI GGCGCC 1 cut(s) 190
SfuI TTCGAA 2 cut(s) 224, 461
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 3 cut(s) 267, 334, 413
SsiI CCGC 6 cut(s) 115, 173, 219, 253, 296, 626
SspDI GGCGCC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 34, 130, 380
TaiI ACGT 3 cut(s) 197, 249, 634
TaqI TCGA 9 cut(s) 102, 108, 207, 224, 375, 461, 507, 559, 666
TasI AATT 3 cut(s) 267, 334, 413
TauI GCSGC 2 cut(s) 175, 221
TfiI GAWTC 4 cut(s) 486, 638, 694, 791
Tru1I TTAA 3 cut(s) 399, 608, 657
Tru9I TTAA 3 cut(s) 399, 608, 657
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 2 cut(s) 383, 426
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 2 cut(s) 351, 626
TspRI CASTG 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 467
Zsp2I ATGCAT 2 cut(s) 407, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.