Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Reverse (-)

27893686 .. 27894189

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG259700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTGTGTTTTATAGTTCAAAGCTTACTTGGTTATCACCGCACAAATGCTCCTGCTCTCAGCAAGGACCTTGCATTTGAAGTTGTTTCAACAATGTTTGATAAATTAGGGGCATACGCTTCTTACTTCATGAGGGGCACGCTGGAGAACTTGGCAGACATGCACAAGTTGCCTGATGAAGACTTCCCGTTTAGGAAGCTGGCCACTCTTCTTCTAGGATCGCTTGTCGAGGAGAAATGTGGGCTAAATGATGTTAATATTACTGCTGTCCTGCCTCAAGGACAACTCAGGGAACTGCTTGCAGATTCTAGGGGACTTAAAGGCATATCAAGGTTGGAACTTTCTCATCGAAAATGGAAGATGGAGTTAAATATTGAGCCCTTTCTAGGAAGGGACTGGTCAGAGGAGATGAGGGCTGAGGAAGCTACAATTACAGCCATATCTGGTGTTGCGCAAATGACAAAGATTCAAAGAAGATTAAACTCGATAACCAGGCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

167

Amino Acids

18.88

Weight (kDa)

6.84

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	20, 80, 90, 470
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	3 cut(s)	24, 199, 425
AluI	AGCT	3 cut(s)	24, 199, 425
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	201
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	493
BfaI	CTAG	3 cut(s)	215, 309, 386
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	73, 301, 408
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	245, 419
BseSI	GKGCMC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	327, 407
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	327, 407
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	140, 381
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	72, 300, 409
BspHI	TCATGA	1 cut(s)	129
BspPI	GGATC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	140, 201, 300
BstDEI	CTNAG	3 cut(s)	59, 287, 417
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 422
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	140, 201, 300
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	2 cut(s)	130, 160
CviJI	RGCY	9 cut(s)	24, 199, 203, 244, 379, 416, 425, 437, 496
CviKI_1	RGCY	9 cut(s)	24, 199, 203, 244, 379, 416, 425, 437, 496
DdeI	CTNAG	3 cut(s)	59, 287, 417
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	2 cut(s)	133, 163
FaiI	YATR	6 cut(s)	14, 115, 131, 161, 326, 440
FaqI	GGGAC	2 cut(s)	327, 407
FatI	CATG	2 cut(s)	129, 159
FriOI	GRGCYC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	215, 309, 386
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	133, 163
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	305, 466
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	74, 163, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 422
HpyF3I	CTNAG	3 cut(s)	59, 287, 417
Hsp92II	CATG	2 cut(s)	133, 163
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	9 cut(s)	66, 128, 185, 186, 274, 284, 382, 429, 478
MaeI	CTAG	3 cut(s)	215, 309, 386
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	5 cut(s)	191, 200, 203, 370, 486
MhlI	GDGCHC	2 cut(s)	140, 381
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	104, 429
MluNI	TGGCCA	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	6 cut(s)	126, 223, 285, 397, 405, 412
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	5 cut(s)	255, 318, 368, 479, 502
Msp20I	TGGCCA	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	169, 422
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	133, 163
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	305, 466
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
SaqAI	TTAA	5 cut(s)	255, 318, 368, 479, 502
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	2 cut(s)	140, 381
SetI	ASST	5 cut(s)	26, 72, 201, 335, 427
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	104, 429
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	2 cut(s)	259, 373
SspMI	CTAG	3 cut(s)	215, 309, 386
StyD4I	CCNGG	1 cut(s)	491
TaqI	TCGA	3 cut(s)	228, 349, 485
TasI	AATT	2 cut(s)	104, 429
TfiI	GAWTC	2 cut(s)	305, 466
Tru1I	TTAA	5 cut(s)	255, 318, 368, 479, 502
Tru9I	TTAA	5 cut(s)	255, 318, 368, 479, 502
TspDTI	ATGAA	2 cut(s)	118, 192
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	3 cut(s)	215, 309, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.