Rh7BG220800

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000835
Physical Location & Seq
Reverse (-)
19010487 .. 19011089
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG220800.1

Sequence Viewer

Length: 603 bp
ATGTGCATTGGGAGGGGGGGAGCAACGTCTTCGTTGCTCAACAGTGGAGTGGCAAAAGTTTATTCCTCCAACAGGGGAATCTGTTTGAGTAAACTCCCTCTTGTGTTTGATGCACTCAAAATTTTGACGGGGAAACCTGTACAAGAGGACGAGGGCTATATAGAAGAGGATATTGACGCCGCAGCTCCCGCATTCAAGTGTCTTATTCATGCTTGCATCGATCAAGGCTTGATCAAACAGGAGCTAGCTATAGTTGAAAAGCTGTGTTCTACTGTTCAAAGCTTACTTGGTTATCACAGCACAAATGCTCCTGCTCTCAGCATGGACCTTGCATTTGAAGTTGTTTCAACAATGTTCGATAAATTAGGGGCATACGCTTCTTACTTCATGAGGGGCACGCTGGAGAACTTGGCAGACTTGCACAAGTTGCTTGATGAAGACTTCCCGTTTAGGAAGCAGGCCACTCTTCTTCTAGGATTGCTTGTCGAGGAGAAATGTGGGCTAAATGATGTTAATAACTTAATATTACTGCTGTCCTGCCTCAAGGACAACTCAGGGAACTGCTTTCAGATTTTAGGGGCCTTAAATGCATATCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

200

Amino Acids

21.63

Weight (kDa)

4.92

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP12_HEAT PF08161 59 - 163 6e-11 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 180, 189
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 5 cut(s) 196, 257, 278, 338, 348
AluBI AGCT 5 cut(s) 185, 244, 248, 262, 282
AluI AGCT 5 cut(s) 185, 244, 248, 262, 282
AoxI GGCC 2 cut(s) 459, 579
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 120
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspS9I GGNCC 2 cut(s) 325, 579
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 21, 444
BbvI GCAGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BclI TGATCA 1 cut(s) 231
BfaI CTAG 2 cut(s) 245, 473
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 180, 183
BlsI GCNGC 2 cut(s) 181, 184
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 325, 579
BmiI GGNNCC 1 cut(s) 580
BmsI GCATC 2 cut(s) 100, 225
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 21, 444
BpmI CTGGAG 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 527
Bsa29I ATCGAT 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 2 cut(s) 331, 567
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 2 cut(s) 461, 581
BshVI ATCGAT 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 72
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 2 cut(s) 461, 581
Bsp1286I GDGCHC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 220, 231
BspACI CCGC 2 cut(s) 180, 189
BspANI GGCC 2 cut(s) 461, 581
BspCNI CTCAG 2 cut(s) 330, 566
BspDI ATCGAT 1 cut(s) 219
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 139
BssMI GATC 2 cut(s) 220, 231
BssNI GRCGYC 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 44, 274
Bst6I CTCTTC 2 cut(s) 159, 471
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 427
BstAUI TGTACA 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 214, 246, 398, 459
BstDEI CTNAG 2 cut(s) 317, 553
BstENI CCTNNNNNAGG 1 cut(s) 70
BstKTI GATC 2 cut(s) 223, 234
BstMBI GATC 2 cut(s) 220, 231
BstMWI GCNNNNNNNGC 3 cut(s) 188, 427, 587
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 21, 444
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 2 cut(s) 461, 581
BsuTUI ATCGAT 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 214, 246, 398, 459
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 325, 579
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 140
CviAII CATG 3 cut(s) 209, 322, 388
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 317, 553
DpnI GATC 2 cut(s) 222, 233
DpnII GATC 2 cut(s) 220, 231
Eam1104I CTCTTC 2 cut(s) 159, 471
EarI CTCTTC 2 cut(s) 159, 471
Eco47I GGWCC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 579
EcoT22I ATGCAT 1 cut(s) 592
FaeI CATG 3 cut(s) 212, 325, 391
FaiI YATR 8 cut(s) 159, 161, 210, 251, 323, 373, 389, 592
FatI CATG 3 cut(s) 208, 321, 387
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 180, 183
Fsp4HI GCNGC 2 cut(s) 180, 183
FspBI CTAG 2 cut(s) 245, 473
GluI GCNGC 2 cut(s) 180, 183
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 2 cut(s) 461, 581
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 3 cut(s) 212, 325, 391
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 570
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 44, 274
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 6, 113, 216, 332, 421, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 427, 587
HpyF3I CTNAG 2 cut(s) 317, 553
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 3 cut(s) 212, 325, 391
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 220, 231
LmnI GCTCC 4 cut(s) 20, 190, 241, 313
LpnPI CCDG 8 cut(s) 58, 150, 224, 324, 386, 443, 540, 550
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 100, 225
MaeI CTAG 2 cut(s) 245, 473
MaeII ACGT 1 cut(s) 26
MalI GATC 2 cut(s) 222, 233
MboI GATC 2 cut(s) 220, 231
MboII GAAGA 5 cut(s) 21, 176, 449, 458, 461
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 2 cut(s) 120, 362
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 9 cut(s) 6, 76, 108, 139, 145, 160, 384, 481, 551
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 3 cut(s) 513, 521, 584
MslI CAYNNNNRTG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 188, 427, 587
NdeII GATC 2 cut(s) 220, 231
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 3 cut(s) 212, 325, 391
NlaIV GGNNCC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 592
PagI TCATGA 1 cut(s) 387
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 181, 184
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 2 cut(s) 325, 579
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 3 cut(s) 513, 521, 584
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 2 cut(s) 220, 231
Sau96I GGNCC 2 cut(s) 325, 579
SduI GDGCHC 1 cut(s) 398
SetI ASST 9 cut(s) 29, 139, 187, 246, 250, 264, 284, 330, 601
SfaNI GCATC 2 cut(s) 100, 225
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 2 cut(s) 120, 362
SsiI CCGC 2 cut(s) 180, 189
SspI AATATT 1 cut(s) 525
SspMI CTAG 2 cut(s) 245, 473
TaaI ACNGT 2 cut(s) 44, 274
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 219, 357, 486
TasI AATT 2 cut(s) 120, 362
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 513, 521, 584
Tru9I TTAA 3 cut(s) 513, 521, 584
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 197, 376, 450
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 70
XapI RAATTY 1 cut(s) 120
XspI CTAG 2 cut(s) 245, 473
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.