Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Forward (+)

13249459 .. 13250042

Gene Structure 584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21223.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACGCTGCATTTGAAATTGTTTCGACAATGAAACAGGCCACTCTTCTTCTTGGATCACTTGTCGAGGAGAAATGTGGACTAAATGATGTTAATATTATAGCTCTCCTGCCTCAAGGACAACTCATGGAACTGCTTGCAGATTACACGGGACTTAAATCCATAGAAAAGCTGGAATTTTCTCATCGAAAACGGAAGGAGGATTTTGATCTTGGGTCCCTCCCAGGAGGGCTTCCATATGGTCGACGTTCAGCAGAGTTTAAGGCCGAGGCAGCTGCAGCTGCCATATATGGTGCTGCGCAGATAGCAAAGAAGATGAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

109

Amino Acids

11.73

Weight (kDa)

6.58

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	104, 172, 275, 281
AluI	AGCT	4 cut(s)	104, 172, 275, 281
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	39, 264
ApeKI	GCWGC	6 cut(s)	8, 272, 275, 278, 281, 296
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	262, 268, 283, 284, 290
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	6 cut(s)	9, 273, 276, 279, 282, 297
BlsI	GCNGC	6 cut(s)	10, 274, 277, 280, 283, 298
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	217, 218
BmrFI	CCNGG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	223, 267
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	223, 267
BseJI	GATNNNNATC	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	5 cut(s)	262, 268, 283, 284, 290
BshFI	GGCC	2 cut(s)	41, 266
BslFI	GGGAC	2 cut(s)	165, 202
BsmFI	GGGAC	2 cut(s)	165, 202
BsnI	GGCC	2 cut(s)	41, 266
Bsp143I	GATC	2 cut(s)	56, 208
BspANI	GGCC	2 cut(s)	41, 266
BspLI	GGNNCC	2 cut(s)	217, 218
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	223, 267
BssMI	GATC	2 cut(s)	56, 208
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	59, 211
BstMBI	GATC	2 cut(s)	56, 208
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 278, 281, 305
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	5 cut(s)	262, 268, 283, 284, 290
BsuRI	GGCC	2 cut(s)	41, 266
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	7 cut(s)	41, 104, 172, 232, 266, 275, 281
CviKI_1	RGCY	7 cut(s)	41, 104, 172, 232, 266, 275, 281
DpnI	GATC	2 cut(s)	58, 210
DpnII	GATC	2 cut(s)	56, 208
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	130
FaiI	YATR	8 cut(s)	101, 128, 164, 238, 240, 287, 289, 291
FaqI	GGGAC	2 cut(s)	165, 202
FatI	CATG	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	6 cut(s)	9, 273, 276, 279, 282, 297
Fsp4HI	GCNGC	6 cut(s)	9, 273, 276, 279, 282, 297
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	6 cut(s)	9, 273, 276, 279, 282, 297
HaeIII	GGCC	2 cut(s)	41, 266
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	80, 245
Hpy8I	GTNNAC	2 cut(s)	80, 245
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	11, 140, 278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 278, 281, 305
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	299
KflI	GGGWCCC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	56, 208
LpnPI	CCDG	5 cut(s)	23, 122, 158, 210, 237
Lsp1109I	GCAGC	5 cut(s)	262, 268, 283, 284, 290
MaeII	ACGT	1 cut(s)	247
MalI	GATC	2 cut(s)	58, 210
MboI	GATC	2 cut(s)	56, 208
MboII	GAAGA	3 cut(s)	38, 41, 325
MluCI	AATT	2 cut(s)	18, 176
MnlI	CCTC	6 cut(s)	61, 123, 193, 221, 230, 262
MseI	TTAA	4 cut(s)	93, 156, 261, 325
MspA1I	CMGCKG	2 cut(s)	275, 281
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	272, 278, 281, 305
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	2 cut(s)	56, 208
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	217, 218
NmeAIII	GCCGAG	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	300
PkrI	GCNGC	6 cut(s)	10, 274, 277, 280, 283, 298
PpuMI	RGGWCCY	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	217, 218
PspPI	GGNCC	1 cut(s)	216
PspPPI	RGGWCCY	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	280
PvuII	CAGCTG	2 cut(s)	275, 281
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	93, 156, 261, 325
SatI	GCNGC	6 cut(s)	9, 273, 276, 279, 282, 297
Sau3AI	GATC	2 cut(s)	56, 208
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	5 cut(s)	106, 174, 250, 277, 283
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	18, 176
SspI	AATATT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	4 cut(s)	26, 66, 187, 244
TasI	AATT	2 cut(s)	18, 176
Tru1I	TTAA	4 cut(s)	93, 156, 261, 325
Tru9I	TTAA	4 cut(s)	93, 156, 261, 325
TseI	GCWGC	6 cut(s)	8, 272, 275, 278, 281, 296
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.