FvH4_3g15220

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
9451975 .. 9454958
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15220.t3

Sequence Viewer

Length: 1224 bp
ATGCTGTTCGAGACGAAGGTGTGGCTGGTCCTCAGCGTGGCGGTGGTCCTCGCCGTTCGGATTTCGTTGACCAATCGGAGACTCCAAGCGGACATGAAGTCCTCTCTCTCTTCCTCCGGCGTCGAACCACTCGTCGCTTTCGTCTCTCTGGCTTCCGGAGACGGCGGCCTCGACGACTTCTTCTCGGAGACGGCGACGACTGACGTGACGGCGCAGAATCTGGAGTACGATTTCTACCGGGACACGTGTCCTCGCGCCGAGAAGATCGTGAGGACGAAGATGGCTTGGATTTACGGGCAGCACAGGGACGTCTCCGCTCAGTTGCTTCGTCTCTTCTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTTCTCTTGGATGACAGCAATGGGAATCAAAACCATGCCATTGAGAAGCAGGCTATACCCAATAGGTCTTTGAAGGGCTTTGATAAAATTGATGAGATCAAGGAGAGGCTTGAAAATGAATGTCCGGGCGTGGTATCTTGTGCCGACGTACTTGCTCTTGCCACTAGAGATGCCATTGTTCTGGCTGGTGGCCCATTCTATCCCATTTTGACTGGAAGAAGAGACAGTACCAGCTCATTCTTTAATGAGGCAATGACAGGGATTCCAAGGCCAGATGACAACATCAATCAGACACTGCATCAGTTCTCCCTGAGAGGTTTTGACGAGAGAGAAACAGTTGCTCTTCTAGGAGGGCACAACATTGGAAAGATAGGGTGTGAGTTCATTATGTCACGCATCAACAACTTCAAAGGCACAGGGCAGCCAGACCCGACTATACCTCCTGAATTTGTCACAGAGATGAGACTGAACTGCGATGATGATTCGAACCAGGCAACTAGTAATGCTGCTGCTGCTGCATCTCCTTTTGTATCAAGAGGACTGCGTGAGAAGTTTACCTCGCAGGGGATGTCATACTATCAACAATTGTCTTCATCATTTTCAACAGGTGCTGGTTTTGACAGTCACTATTATCAGAGCTTGTTGAGGGGAAGAGGACTCCTCTTTGCTGATCAGCAATTAATGGCTAATAAAAGGACTGCTCGGGTGGTCACAGCATATGCTTCAGATGGTGGATCAGCCTTTCGAATGGACTTTGCCCGGGCAATGATGAAGATGTCAGTTCTTAATGTTCTCACTGGATCCCAAGGTGAAGTCCGTTTTGACTGTTCTCTCCCGACCCCTAGTTCATAA

Protein Analysis

408

Amino Acids

44.73

Weight (kDa)

5.39

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 90 - 394 2.5e-67 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 317
AccII CGCG 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 4 cut(s) 41, 89, 165, 315
AclWI GGATC 3 cut(s) 1114, 1167, 1180
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 1 cut(s) 1080
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 2 cut(s) 120, 309
AfaI GTAC 3 cut(s) 227, 522, 601
AfiI CCNNNNNNNGG 2 cut(s) 37, 936
AflIII ACRYGT 2 cut(s) 243, 245
AgsI TTSAA 4 cut(s) 445, 485, 781, 975
AhdI GACNNNNNGTC 1 cut(s) 97
AhlI ACTAGT 1 cut(s) 869
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 861
AluBI AGCT 2 cut(s) 606, 1011
AluI AGCT 2 cut(s) 606, 1011
Alw26I GTCTC 9 cut(s) 5, 73, 148, 153, 182, 316, 335, 588, 829
AlwI GGATC 3 cut(s) 1114, 1167, 1180
AlwNI CAGNNNCTG 3 cut(s) 220, 667, 983
Ama87I CYCGRG 2 cut(s) 1074, 1131
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 3 cut(s) 166, 562, 641
ApeKI GCWGC 6 cut(s) 298, 793, 878, 881, 884, 887
ApoI RAATTY 1 cut(s) 818
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AseI ATTAAT 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 214, 257
AspS9I GGNCC 3 cut(s) 28, 46, 563
AsuC2I CCSGG 4 cut(s) 239, 498, 1132, 1133
AsuHPI GGTGA 1 cut(s) 1193
AsuII TTCGAA 2 cut(s) 857, 1117
AvaI CYCGRG 2 cut(s) 1074, 1131
AvaII GGWCC 2 cut(s) 28, 46
BaeGI GKGCMC 1 cut(s) 729
BamHI GGATCC 1 cut(s) 1172
BarI GAAGNNNNNNTAC 2 cut(s) 583, 615
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 954
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 6 cut(s) 310, 805, 865, 868, 871, 874
BccI CCATC 2 cut(s) 274, 1094
BceAI ACGGC 4 cut(s) 38, 178, 207, 225
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 863
BclI TGATCA 1 cut(s) 1042
BcnI CCSGG 4 cut(s) 239, 498, 1132, 1133
BcoDI GTCTC 9 cut(s) 5, 73, 148, 153, 182, 316, 335, 588, 829
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 4 cut(s) 537, 719, 870, 1215
BisI GCNGC 7 cut(s) 166, 299, 794, 879, 882, 885, 888
BlsI GCNGC 7 cut(s) 167, 300, 795, 880, 883, 886, 889
Bme1390I CCNGG 5 cut(s) 239, 498, 863, 1132, 1133
Bme18I GGWCC 2 cut(s) 28, 46
BmeRI GACNNNNNGTC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 1074, 1131
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 28, 46, 563
BmiI GGNNCC 1 cut(s) 1174
BmrFI CCNGG 5 cut(s) 239, 498, 863, 1132, 1133
BmsI GCATC 5 cut(s) 355, 532, 679, 777, 899
BoxI GACNNNNGTC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 954
BplI GAGNNNNNCTC 2 cut(s) 1017, 1049
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 2 cut(s) 857, 1117
BpuMI CCSGG 4 cut(s) 239, 498, 1132, 1133
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 120, 309
BsaJI CCNNGG 3 cut(s) 638, 1131, 1177
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 936
Bse1I ACTGG 2 cut(s) 589, 1174
Bse3DI GCAATG 3 cut(s) 397, 630, 1143
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 638, 1131, 1177
BseGI GGATG 2 cut(s) 388, 945
BseLI CCNNNNNNNGG 2 cut(s) 37, 936
BseMI GCAATG 3 cut(s) 397, 630, 1143
BseMII CTCAG 3 cut(s) 46, 332, 674
BseNI ACTGG 2 cut(s) 589, 1174
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 6 cut(s) 310, 805, 865, 868, 871, 874
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 168, 564, 643
BsiHKCI CYCGRG 2 cut(s) 1074, 1131
BsiSI CCGG 5 cut(s) 117, 156, 238, 497, 1132
BslFI GGGAC 2 cut(s) 254, 320
BslI CCNNNNNNNGG 2 cut(s) 37, 936
BsmAI GTCTC 9 cut(s) 5, 73, 148, 153, 182, 316, 335, 588, 829
BsmBI CGTCTC 6 cut(s) 5, 148, 153, 182, 316, 335
BsmFI GGGAC 2 cut(s) 254, 320
BsnI GGCC 3 cut(s) 168, 564, 643
BsoBI CYCGRG 2 cut(s) 1074, 1131
Bsp119I TTCGAA 2 cut(s) 857, 1117
Bsp1286I GDGCHC 1 cut(s) 729
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 5 cut(s) 264, 468, 1042, 1106, 1172
BspACI CCGC 4 cut(s) 41, 89, 165, 315
BspANI GGCC 3 cut(s) 168, 564, 643
BspCNI CTCAG 3 cut(s) 45, 331, 675
BspEI TCCGGA 1 cut(s) 155
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 1174
BspPI GGATC 3 cut(s) 1114, 1167, 1180
BspQI GCTCTTC 1 cut(s) 720
BspT104I TTCGAA 2 cut(s) 857, 1117
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 3 cut(s) 397, 630, 1143
BsrI ACTGG 2 cut(s) 589, 1174
BssECI CCNNGG 3 cut(s) 638, 1131, 1177
BssMI GATC 5 cut(s) 264, 468, 1042, 1106, 1172
BssNI GRCGYC 2 cut(s) 120, 309
BssT1I CCWWGG 2 cut(s) 638, 1177
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 4 cut(s) 599, 709, 995, 1199
Bst6I CTCTTC 5 cut(s) 115, 338, 586, 720, 1018
BstACI GRCGYC 2 cut(s) 120, 309
BstBAI YACGTR 1 cut(s) 246
BstBI TTCGAA 2 cut(s) 857, 1117
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 32, 318, 683
BstF5I GGATG 2 cut(s) 388, 945
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 2 cut(s) 214, 257
BstKTI GATC 5 cut(s) 267, 471, 1045, 1109, 1175
BstMAI GTCTC 9 cut(s) 5, 73, 148, 153, 182, 316, 335, 588, 829
BstMBI GATC 5 cut(s) 264, 468, 1042, 1106, 1172
BstMWI GCNNNNNNNGC 2 cut(s) 884, 887
BstNI CCWGG 1 cut(s) 863
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 5 cut(s) 237, 496, 861, 1130, 1131
BstSLI GKGCMC 1 cut(s) 729
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 6 cut(s) 310, 805, 865, 868, 871, 874
BstV2I GAAGAC 1 cut(s) 954
BstX2I RGATCY 1 cut(s) 1172
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 1172
BsuRI GGCC 3 cut(s) 168, 564, 643
BtgZI GCGATG 1 cut(s) 861
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 388, 945
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 665, 1167
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 3 cut(s) 220, 667, 983
CfoI GCGC 2 cut(s) 214, 257
Cfr13I GGNCC 3 cut(s) 28, 46, 563
Cfr9I CCCGGG 1 cut(s) 1131
CseI GACGC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 226, 521, 600
CviAII CATG 3 cut(s) 94, 341, 407
CviQI GTAC 3 cut(s) 226, 521, 600
DdeI CTNAG 3 cut(s) 32, 318, 683
DpnI GATC 5 cut(s) 266, 470, 1044, 1108, 1174
DpnII GATC 5 cut(s) 264, 468, 1042, 1106, 1172
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 5 cut(s) 115, 338, 586, 720, 1018
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 5 cut(s) 115, 338, 586, 720, 1018
Eco130I CCWWGG 2 cut(s) 638, 1177
Eco47I GGWCC 2 cut(s) 28, 46
Eco57I CTGAAG 1 cut(s) 1080
Eco72I CACGTG 1 cut(s) 246
Eco88I CYCGRG 2 cut(s) 1074, 1131
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 2 cut(s) 638, 1177
ErhI CCWWGG 2 cut(s) 638, 1177
Esp3I CGTCTC 6 cut(s) 5, 148, 153, 182, 316, 335
FaeI CATG 3 cut(s) 97, 344, 410
FaqI GGGAC 2 cut(s) 254, 320
FatI CATG 3 cut(s) 93, 340, 406
FauNDI CATATG 1 cut(s) 1090
FbaI TGATCA 1 cut(s) 1042
Fnu4HI GCNGC 7 cut(s) 166, 299, 794, 879, 882, 885, 888
FokI GGATG 2 cut(s) 395, 952
Fsp4HI GCNGC 7 cut(s) 166, 299, 794, 879, 882, 885, 888
FspBI CTAG 4 cut(s) 537, 719, 870, 1215
GlaI GCGC 2 cut(s) 213, 256
GluI GCNGC 7 cut(s) 166, 299, 794, 879, 882, 885, 888
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 3 cut(s) 168, 564, 643
HapII CCGG 5 cut(s) 117, 156, 238, 497, 1132
HgaI GACGC 1 cut(s) 109
HhaI GCGC 2 cut(s) 214, 257
Hin1I GRCGYC 2 cut(s) 120, 309
Hin1II CATG 3 cut(s) 97, 344, 410
Hin6I GCGC 2 cut(s) 212, 255
HinP1I GCGC 2 cut(s) 212, 255
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 6 cut(s) 81, 217, 397, 634, 854, 1029
HpaII CCGG 5 cut(s) 117, 156, 238, 497, 1132
HphI GGTGA 1 cut(s) 1193
Hpy166II GTNNAC 2 cut(s) 69, 927
Hpy188I TCNGA 6 cut(s) 60, 78, 187, 663, 1008, 1099
Hpy188III TCNNGA 7 cut(s) 10, 156, 221, 268, 815, 906, 1207
Hpy8I GTNNAC 2 cut(s) 69, 927
Hpy99I CGWCG 5 cut(s) 125, 137, 176, 199, 521
HpyAV CCTTC 2 cut(s) 10, 439
HpyCH4III ACNGT 4 cut(s) 599, 709, 995, 1199
HpyCH4IV ACGT 4 cut(s) 204, 245, 309, 519
HpyCH4V TGCA 2 cut(s) 670, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 884, 887
HpyF3I CTNAG 3 cut(s) 32, 318, 683
HpySE526I ACGT 4 cut(s) 204, 245, 309, 519
Hsp92I GRCGYC 2 cut(s) 120, 309
Hsp92II CATG 3 cut(s) 97, 344, 410
HspAI GCGC 2 cut(s) 212, 255
Kpn2I TCCGGA 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 5 cut(s) 264, 468, 1042, 1106, 1172
LguI GCTCTTC 1 cut(s) 720
Lsp1109I GCAGC 6 cut(s) 310, 805, 865, 868, 871, 874
LweI GCATC 5 cut(s) 355, 532, 679, 777, 899
MaeI CTAG 4 cut(s) 537, 719, 870, 1215
MaeII ACGT 4 cut(s) 204, 245, 309, 519
MaeIII GTNAC 5 cut(s) 205, 762, 823, 995, 1081
MalI GATC 5 cut(s) 266, 470, 1044, 1108, 1174
MbiI CCGCTC 1 cut(s) 317
MboI GATC 5 cut(s) 264, 468, 1042, 1106, 1172
MfeI CAATTG 1 cut(s) 956
MflI RGATCY 1 cut(s) 1172
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 4 cut(s) 459, 818, 956, 1049
MlyI GAGTC 2 cut(s) 75, 1023
MroI TCCGGA 1 cut(s) 155
MseI TTAA 3 cut(s) 615, 1052, 1158
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 5 cut(s) 117, 156, 238, 497, 1132
MspR9I CCNGG 5 cut(s) 239, 498, 863, 1132, 1133
MunI CAATTG 1 cut(s) 956
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 884, 887
NciI CCSGG 4 cut(s) 239, 498, 1132, 1133
NdeI CATATG 1 cut(s) 1090
NdeII GATC 5 cut(s) 264, 468, 1042, 1106, 1172
NlaIII CATG 3 cut(s) 97, 344, 410
NlaIV GGNNCC 1 cut(s) 1174
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 5 cut(s) 205, 762, 823, 995, 1081
NspV TTCGAA 2 cut(s) 857, 1117
PciSI GCTCTTC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 138, 168, 191
PfeI GAWTC 4 cut(s) 217, 397, 634, 854
PkrI GCNGC 7 cut(s) 167, 300, 795, 880, 883, 886, 889
PleI GAGTC 2 cut(s) 75, 1023
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 2 cut(s) 75, 1023
Ppu21I YACGTR 1 cut(s) 246
PshAI GACNNNNGTC 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 861
PspCI CACGTG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 1 cut(s) 1174
PspPI GGNCC 3 cut(s) 28, 46, 563
PstNI CAGNNNCTG 3 cut(s) 220, 667, 983
PsuI RGATCY 1 cut(s) 1172
RsaI GTAC 3 cut(s) 227, 522, 601
RsaNI GTAC 3 cut(s) 226, 521, 600
RseI CAYNNNNRTG 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 615, 1052, 1158
SatI GCNGC 7 cut(s) 166, 299, 794, 879, 882, 885, 888
Sau3AI GATC 5 cut(s) 264, 468, 1042, 1106, 1172
Sau96I GGNCC 3 cut(s) 28, 46, 563
SchI GAGTC 2 cut(s) 75, 1023
ScrFI CCNGG 5 cut(s) 239, 498, 863, 1132, 1133
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 5 cut(s) 355, 532, 679, 777, 899
SfuI TTCGAA 2 cut(s) 857, 1117
SinI GGWCC 2 cut(s) 28, 46
SmaI CCCGGG 1 cut(s) 1133
SmiMI CAYNNNNRTG 1 cut(s) 830
SpeI ACTAGT 1 cut(s) 869
SrfI GCCCGGGC 1 cut(s) 1133
Sse9I AATT 4 cut(s) 459, 818, 956, 1049
SsiI CCGC 4 cut(s) 41, 89, 165, 315
SspMI CTAG 4 cut(s) 537, 719, 870, 1215
StyD4I CCNGG 5 cut(s) 237, 496, 861, 1130, 1131
StyI CCWWGG 2 cut(s) 638, 1177
TaaI ACNGT 4 cut(s) 599, 709, 995, 1199
TaiI ACGT 4 cut(s) 207, 248, 312, 522
TaqI TCGA 5 cut(s) 9, 123, 171, 857, 1117
TasI AATT 4 cut(s) 459, 818, 956, 1049
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 4 cut(s) 217, 397, 634, 854
Tru1I TTAA 3 cut(s) 615, 1052, 1158
Tru9I TTAA 3 cut(s) 615, 1052, 1158
TscAI CASTG 2 cut(s) 672, 1174
TseFI GTSAC 5 cut(s) 205, 762, 823, 995, 1081
TseI GCWGC 6 cut(s) 298, 793, 878, 881, 884, 887
Tsp45I GTSAC 5 cut(s) 205, 762, 823, 995, 1081
TspDTI ATGAA 7 cut(s) 110, 340, 504, 745, 954, 1157, 1209
TspGWI ACGGA 2 cut(s) 361, 1178
TspMI CCCGGG 1 cut(s) 1131
TspRI CASTG 2 cut(s) 672, 1174
VpaK11BI GGWCC 2 cut(s) 28, 46
VspI ATTAAT 1 cut(s) 1052
XapI RAATTY 1 cut(s) 818
XmaI CCCGGG 1 cut(s) 1131
XspI CTAG 4 cut(s) 537, 719, 870, 1215
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.