MD05G1224400.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
35712401 .. 35714983
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1224400.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGAGAGGGTTCGTCGTCGCTATGGTGGTGATCTTCTCTGTGCTGCTGTCCCTGAACAACCCGAGAGGCGAATCGGAGAGAGCCTTTCTCTCCGCCTCCTCCTCCGCCCAAGAACCACTGGTCAATCTGGTTTCTCTGGCTTCTTCCGATGGCGGCCAAGATTTCGTCACAGAGGAGATGAGTGATGGAGTTCAATCGGATCTTGAATACGATTTCTACCGCGAGACTTGCCCAGAAGCTGAGACCATTGTGAGGTCGACGATGGCGCAGATTTACTCCCAGCAGAAGAATGTCTCTGCTCAGCTGCTGCGCCTCTTCTTCCATGACTGCTTCATTCAGGGCTGTGATGCTTCAGTCCTCTTGGATGACAGCAATGGGAATAAAAACCATTCCATAGAGAAGCAGGCTGTGCCAAATAAGACCTTGAAGGGATTCGAAAATGTGGACCTGATCAAGGAGGTGCTCGAAAATGTTTGTCCAGGAGTGGTATCTTGTGCTGACATACTGGCTCTTGCCACCAGAGATGGCATTGTTCTGGCTGATGGCCCCTTTTATCCGGTGTTCACTGGTAGAAGAGATAGCACCATGTCCTACCATGATGAAGCATTGGCTGAAATTCCTAAACCTGATGATAACATCACTCAGACACTTCATCTGTTCTCGGTGAGAGGATTTAGCGACCGAGAAACTGTCAGTCTTCTAGGAGCGCACAACATTGGAAAGATTGGATGTGAGTTCATTCAGGCCCGTCTTAACAACTTTAAGGGCACGGGCAAACCAGACCCCACTGTTTCTCCTAGTTTCCTGAAGGAGATGAGATTTGTCTGCGATGACAATGGAACAAGGAGCAGCCAGAAGTCACCTGCACCAGGGCCAACAAGGGGATTGATGAGGGAGAGGTCGTCGGGACTGAGGGGGATGCCATACTTCCAGCAGTTGTCTTCATCCGTACCATCTGGGAGAGGCTTTGACACTCACTATTACCAGAGCTTATTGAAGGGCAGAGGACTCCTCTTTGCTGATCAGCAACTGATGGCAAATGAGAGGACTGCAAGGTTGGTCAGAGCTTATGCATCCGATGACGGATCAACCTTCCGGATGGACTTTGCCAGGGCTATGATGAAGATGTCAAAGCTAAAGGCGGCCAACGGATCTCCAGGTCAGGTCAGGGTGGACTGCTCTTTGCCACTGCAGACTTCTTAA

Protein Analysis

401

Amino Acids

43.93

Weight (kDa)

5.78

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 84 - 360 6.4e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 871
Acc36I ACCTGC 1 cut(s) 871
AccI GTMKAC 1 cut(s) 257
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 1095
AciI CCGC 5 cut(s) 93, 105, 153, 220, 1142
AclWI GGATC 3 cut(s) 207, 1093, 1159
AcoI YGGCCR 2 cut(s) 154, 1143
AcsI RAATTY 1 cut(s) 615
AcuI CTGAAG 2 cut(s) 336, 827
AfaI GTAC 1 cut(s) 951
AfiI CCNNNNNNNGG 4 cut(s) 252, 454, 869, 881
AgsI TTSAA 4 cut(s) 194, 206, 427, 997
AjnI CCWGG 4 cut(s) 478, 868, 1109, 1156
AluBI AGCT 5 cut(s) 239, 304, 990, 1067, 1135
AluI AGCT 5 cut(s) 239, 304, 990, 1067, 1135
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 218, 236, 298
AlwI GGATC 3 cut(s) 207, 1093, 1159
AlwNI CAGNNNCTG 3 cut(s) 239, 307, 1030
Ama87I CYCGRG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 1095
AoxI GGCC 5 cut(s) 154, 544, 744, 872, 1143
ApeKI GCWGC 4 cut(s) 43, 304, 307, 849
ApoI RAATTY 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 3 cut(s) 268, 312, 709
AspS9I GGNCC 4 cut(s) 445, 545, 745, 872
AsuHPI GGTGA 3 cut(s) 40, 676, 852
AsuII TTCGAA 1 cut(s) 435
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 770
BbsI GAAGAC 2 cut(s) 689, 933
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 30, 291, 294, 861
BccI CCATC 8 cut(s) 143, 179, 256, 518, 536, 961, 1027, 1093
BciT130I CCWGG 4 cut(s) 480, 870, 1111, 1158
BclI TGATCA 2 cut(s) 450, 1021
BcoDI GTCTC 3 cut(s) 218, 236, 298
BfaI CTAG 2 cut(s) 701, 798
BfmI CTRYAG 1 cut(s) 1190
BfuAI ACCTGC 1 cut(s) 871
BisI GCNGC 6 cut(s) 44, 154, 305, 308, 850, 1143
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 6 cut(s) 45, 155, 306, 309, 851, 1144
Bme1390I CCNGG 4 cut(s) 480, 870, 1111, 1158
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 445, 545, 745, 872
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 4 cut(s) 480, 870, 1111, 1158
BmsI GCATC 3 cut(s) 337, 909, 1082
BpiI GAAGAC 2 cut(s) 689, 933
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 996, 1028
BpmI CTGGAG 1 cut(s) 1140
Bpu1102I GCTNAGC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 869, 1110
BsaWI WCCGGW 2 cut(s) 556, 1095
BsaXI ACNNNNNCTCC 4 cut(s) 778, 808, 887, 917
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 454, 869, 881
Bse1I ACTGG 3 cut(s) 123, 510, 571
Bse3DI GCAATG 1 cut(s) 379
BseAI TCCGGA 1 cut(s) 1095
BseBI CCWGG 4 cut(s) 480, 870, 1111, 1158
BseDI CCNNGG 2 cut(s) 869, 1110
BseGI GGATG 6 cut(s) 370, 734, 924, 944, 1073, 1104
BseLI CCNNNNNNNGG 4 cut(s) 252, 454, 869, 881
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 4 cut(s) 231, 314, 656, 902
BseNI ACTGG 3 cut(s) 123, 510, 571
BseRI GAGGAG 4 cut(s) 88, 91, 188, 1001
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 4 cut(s) 30, 291, 294, 861
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 682
BshFI GGCC 5 cut(s) 156, 546, 746, 874, 1145
BsiEI CGRYCG 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 557, 1096
BslFI GGGAC 2 cut(s) 34, 921
BslI CCNNNNNNNGG 4 cut(s) 252, 454, 869, 881
BsmAI GTCTC 3 cut(s) 218, 236, 298
BsmFI GGGAC 2 cut(s) 34, 921
BsnI GGCC 5 cut(s) 156, 546, 746, 874, 1145
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 465, 770
Bsp13I TCCGGA 1 cut(s) 1095
Bsp143I GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 5 cut(s) 93, 105, 153, 220, 1142
BspANI GGCC 5 cut(s) 156, 546, 746, 874, 1145
BspCNI CTCAG 4 cut(s) 232, 313, 655, 903
BspEI TCCGGA 1 cut(s) 1095
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 547
BspMAI CTGCAG 1 cut(s) 1194
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 3 cut(s) 207, 1093, 1159
BspT104I TTCGAA 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 3 cut(s) 123, 510, 571
BssECI CCNNGG 2 cut(s) 869, 1110
BssMI GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
Bst2UI CCWGG 4 cut(s) 480, 870, 1111, 1158
Bst4CI ACNGT 2 cut(s) 691, 790
Bst6I CTCTTC 2 cut(s) 320, 568
BstAPI GCANNNNNTGC 1 cut(s) 409
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 4 cut(s) 240, 300, 642, 911
BstENI CCTNNNNNAGG 2 cut(s) 452, 867
BstF5I GGATG 6 cut(s) 370, 734, 924, 944, 1073, 1104
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 3 cut(s) 268, 312, 709
BstKTI GATC 6 cut(s) 33, 202, 453, 1024, 1088, 1154
BstMAI GTCTC 3 cut(s) 218, 236, 298
BstMBI GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
BstMCI CGRYCG 1 cut(s) 682
BstMWI GCNNNNNNNGC 2 cut(s) 228, 409
BstNI CCWGG 4 cut(s) 480, 870, 1111, 1158
BstSCI CCNGG 4 cut(s) 478, 868, 1109, 1156
BstSFI CTRYAG 1 cut(s) 1190
BstSLI GKGCMC 1 cut(s) 770
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 4 cut(s) 30, 291, 294, 861
BstV2I GAAGAC 2 cut(s) 689, 933
BstX2I RGATCY 2 cut(s) 199, 1151
BstYI RGATCY 2 cut(s) 199, 1151
BsuRI GGCC 5 cut(s) 156, 546, 746, 874, 1145
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 6 cut(s) 370, 734, 924, 944, 1073, 1104
BtsI GCAGTG 1 cut(s) 1187
BtsIMutI CAGTG 4 cut(s) 116, 564, 786, 1187
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 3 cut(s) 239, 307, 1030
CfoI GCGC 3 cut(s) 268, 312, 709
Cfr13I GGNCC 4 cut(s) 445, 545, 745, 872
Csp6I GTAC 1 cut(s) 950
CviAII CATG 3 cut(s) 323, 586, 596
CviQI GTAC 1 cut(s) 950
DdeI CTNAG 4 cut(s) 240, 300, 642, 911
DpnI GATC 6 cut(s) 32, 201, 452, 1023, 1087, 1153
DpnII GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
EaeI YGGCCR 2 cut(s) 154, 1143
Eam1104I CTCTTC 2 cut(s) 320, 568
EarI CTCTTC 2 cut(s) 320, 568
EciI GGCGGA 2 cut(s) 82, 94
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 336, 827
Eco88I CYCGRG 1 cut(s) 61
EcoNI CCTNNNNNAGG 2 cut(s) 452, 867
EcoRII CCWGG 4 cut(s) 478, 868, 1109, 1156
EcoT22I ATGCAT 1 cut(s) 1075
FaeI CATG 3 cut(s) 326, 589, 599
FaiI YATR 9 cut(s) 23, 324, 395, 503, 587, 597, 925, 1071, 1118
FaqI GGGAC 2 cut(s) 34, 921
FatI CATG 3 cut(s) 322, 585, 595
FbaI TGATCA 2 cut(s) 450, 1021
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 6 cut(s) 44, 154, 305, 308, 850, 1143
FokI GGATG 6 cut(s) 377, 741, 931, 931, 1060, 1111
Fsp4HI GCNGC 6 cut(s) 44, 154, 305, 308, 850, 1143
FspBI CTAG 2 cut(s) 701, 798
GlaI GCGC 3 cut(s) 267, 311, 708
GluI GCNGC 6 cut(s) 44, 154, 305, 308, 850, 1143
GsaI CCCAGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 156, 546, 746, 874, 1145
HapII CCGG 2 cut(s) 557, 1096
HhaI GCGC 3 cut(s) 268, 312, 709
Hin1II CATG 3 cut(s) 326, 589, 599
Hin6I GCGC 3 cut(s) 266, 310, 707
HinP1I GCGC 3 cut(s) 266, 310, 707
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 3 cut(s) 71, 432, 1008
HpaII CCGG 2 cut(s) 557, 1096
HphI GGTGA 3 cut(s) 40, 676, 852
Hpy166II GTNNAC 4 cut(s) 258, 445, 564, 1174
Hpy188I TCNGA 6 cut(s) 76, 148, 199, 645, 1064, 1078
Hpy188III TCNNGA 4 cut(s) 203, 805, 906, 1096
Hpy8I GTNNAC 4 cut(s) 258, 445, 564, 1174
Hpy99I CGWCG 4 cut(s) 17, 20, 262, 907
HpyAV CCTTC 4 cut(s) 421, 802, 991, 1102
HpyCH4III ACNGT 2 cut(s) 691, 790
HpyCH4V TGCA 4 cut(s) 866, 1052, 1073, 1192
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 409
HpyF3I CTNAG 4 cut(s) 240, 300, 642, 911
Hsp92II CATG 3 cut(s) 326, 589, 599
HspAI GCGC 3 cut(s) 266, 310, 707
Kpn2I TCCGGA 1 cut(s) 1095
Ksp22I TGATCA 2 cut(s) 450, 1021
Kzo9I GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
LmnI GCTCC 2 cut(s) 704, 846
Lsp1109I GCAGC 4 cut(s) 30, 291, 294, 861
LweI GCATC 3 cut(s) 337, 909, 1082
MaeI CTAG 2 cut(s) 701, 798
MaeIII GTNAC 2 cut(s) 166, 858
MalI GATC 6 cut(s) 32, 201, 452, 1023, 1087, 1153
MboI GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
MboII GAAGA 9 cut(s) 25, 135, 298, 307, 310, 585, 689, 933, 1135
MflI RGATCY 2 cut(s) 199, 1151
MhlI GDGCHC 2 cut(s) 465, 770
MluCI AATT 1 cut(s) 615
MlyI GAGTC 1 cut(s) 1002
Mph1103I ATGCAT 1 cut(s) 1075
MroI TCCGGA 1 cut(s) 1095
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 3 cut(s) 753, 762, 1201
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 557, 1096
MspR9I CCNGG 4 cut(s) 480, 870, 1111, 1158
MvaI CCWGG 4 cut(s) 480, 870, 1111, 1158
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 228, 409
NdeII GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
NlaIII CATG 3 cut(s) 326, 589, 599
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 166, 858
NsiI ATGCAT 1 cut(s) 1075
NspV TTCGAA 1 cut(s) 435
PaqCI CACCTGC 1 cut(s) 871
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 71, 432
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 6 cut(s) 45, 155, 306, 309, 851, 1144
PleI GAGTC 1 cut(s) 1002
PpsI GAGTC 1 cut(s) 1002
Psp6I CCWGG 4 cut(s) 478, 868, 1109, 1156
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 4 cut(s) 478, 868, 1109, 1156
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 4 cut(s) 445, 545, 745, 872
PstI CTGCAG 1 cut(s) 1194
PstNI CAGNNNCTG 3 cut(s) 239, 307, 1030
PsuI RGATCY 2 cut(s) 199, 1151
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 951
RsaNI GTAC 1 cut(s) 950
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 753, 762, 1201
SatI GCNGC 6 cut(s) 44, 154, 305, 308, 850, 1143
Sau3AI GATC 6 cut(s) 30, 199, 450, 1021, 1085, 1151
Sau96I GGNCC 4 cut(s) 445, 545, 745, 872
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 4 cut(s) 480, 870, 1111, 1158
SduI GDGCHC 2 cut(s) 465, 770
SfaNI GCATC 3 cut(s) 337, 909, 1082
SfcI CTRYAG 1 cut(s) 1190
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 445
Sse9I AATT 1 cut(s) 615
SsiI CCGC 5 cut(s) 93, 105, 153, 220, 1142
SspMI CTAG 2 cut(s) 701, 798
StyD4I CCNGG 4 cut(s) 478, 868, 1109, 1156
TaaI ACNGT 2 cut(s) 691, 790
TaqI TCGA 3 cut(s) 257, 435, 465
TaqII GACCGA 1 cut(s) 696
TasI AATT 1 cut(s) 615
TauI GCSGC 2 cut(s) 156, 1145
TfiI GAWTC 2 cut(s) 71, 432
Tru1I TTAA 3 cut(s) 753, 762, 1201
Tru9I TTAA 3 cut(s) 753, 762, 1201
TscAI CASTG 4 cut(s) 123, 571, 793, 1194
TseFI GTSAC 2 cut(s) 166, 858
TseI GCWGC 4 cut(s) 43, 304, 307, 849
Tsp45I GTSAC 2 cut(s) 166, 858
TspDTI ATGAA 6 cut(s) 322, 615, 641, 727, 933, 1136
TspGWI ACGGA 3 cut(s) 937, 1098, 1164
TspRI CASTG 4 cut(s) 123, 571, 793, 1194
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 2 cut(s) 452, 867
XapI RAATTY 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 2 cut(s) 701, 798
Zsp2I ATGCAT 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.