RchiOBHm_Chr4g0398441

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
14952499 .. 14952828
330 bp
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UTR
Exon/CDS
Intron
PRQ37062

Sequence Viewer

Length: 174 bp
ATGTGTTTAAGCTTGAATGATGAAATCAATGTCCAATTCATGGTGTTAATTGAACCACGAGAGTTCTATTTTGAGGTCGAAGACGGCTTGGATCAGAGGAATGTCTCGGCTCAGTTGCTGCGCCTCTTTTTCCATGACTGCTTCATTGAGGTAAAGAACTCAGATTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.75

Weight (kDa)

4.21

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AclWI GGATC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 16, 53
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 123
BauI CACGAG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 109
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 125, 174
BseXI GCAGC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 124, 173
BspHI TCATGA 1 cut(s) 170
BspPI GGATC 1 cut(s) 99
BssMI GATC 1 cut(s) 91
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 111, 160
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 118
CciI TCATGA 1 cut(s) 170
CfoI GCGC 1 cut(s) 123
CviAII CATG 3 cut(s) 40, 134, 171
CviJI RGCY 3 cut(s) 12, 87, 110
CviKI_1 RGCY 3 cut(s) 12, 87, 110
DdeI CTNAG 2 cut(s) 111, 160
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
FaeI CATG 3 cut(s) 43, 137, 174
FaiI YATR 3 cut(s) 41, 135, 172
FatI CATG 3 cut(s) 39, 133, 170
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 123
Hin1II CATG 3 cut(s) 43, 137, 174
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 96, 163
Hpy188III TCNNGA 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 111, 160
Hsp92II CATG 3 cut(s) 43, 137, 174
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 105
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 92, 159
MluCI AATT 2 cut(s) 35, 48
MnlI CCTC 4 cut(s) 67, 90, 134, 142
MseI TTAA 2 cut(s) 8, 47
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 43, 137, 174
NmeAIII GCCGAG 1 cut(s) 86
PagI TCATGA 1 cut(s) 170
PfeI GAWTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 8, 47
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 91
SetI ASST 3 cut(s) 14, 78, 153
SgeI CNNG 7 cut(s) 25, 52, 69, 71, 100, 118, 146
Sse9I AATT 2 cut(s) 35, 48
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 35, 48
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 8, 47
Tru9I TTAA 2 cut(s) 8, 47
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 4 cut(s) 28, 36, 133, 159
Van91I CCANNNNNTGG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.