pycom05g20700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
23481945 .. 23484529
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20700.4

Sequence Viewer

Length: 1215 bp
ATGACGATGAGCACTATGAAAGGGTTCGTCGTCGCTATGGTGGTGATCTTCTCTGTGCTTCTGTCCCTGAACAACCCGAGAGGCGAATCGGAGAGAGCCTTTCTCTCCGCCTCCTCCTCCGCCCAAGAGCCACTGGTCAATCTGGTTTCTCTGACTTCTTCCGATGGAGGGCAAGATTTCGTCATGGAGGATATGAATGATGGAGGTCAATCGGATCTTGAATACGATTTCTACCGCGAGACTTGCCCAGAAGCTGAGACCATTGTGAGGTCGACGATGGCGCAGATTTACTCCCAGCAGAAGAATGTCTCTGCTCAGCTGCTGCGCCTCTTCTTCCATGACTGCTTCATTCAGGGCTGTGATGCTTCAGTCCTCTTGGACGACAGCAATGGGAATAAAAACCATTCCATAGAGAAGCTGGCTGTTCCAAATAAGACCTTGAAGGGATTCGATAAAGTGGACCTGATCAAGGAGGTGCTCGAAAATGTTTGTCCAGGAGTGGTATCTTGTGCTGACACACTTGCTCTTGCCACCAGAGATGGCATTGTTCTGGCTGATGGCCCCTTTTATCCGGTGTTCACTGGTAGAAGAGATAGCACCAGGTCCTACCATGATGAAGCATTGGCTGAGATTCCTAAACCTGATGATAACATCACTCAGACACTTCATCTGTTCTCAGTGAGAGGATTTAGCGACCGAGAAACTGTCAGTCTTCTAGCGCACAACATTGGAAAGATTGGATGTGAGTTCATTCAGGCCCGTCTTAACAACTTTAAGGGGACGGGCAAACCAGACCCCACTGTTTCTCCTAGTTTCCTGAAAGAGATGAGATTTGTCTGCGATGACAATGGAACAAGGAGCAGCCAGAAGTCCCCTGCACCGGGGCCAACAAGGGGATTGATGAGGGAGAGGTCGTCGGGACTGAGGGGGATGCCATACTTCCAGCAGTTGTCTTCCTCCGTACCATCTGGGAGAGGCTTTGACACTCACTATTACCAGAGCTTATTGAAGGGCAGAGGACTCCTCTTTGCTGATCAGCAACTGATGGCAAATGAGAGGACTGCAAGGTTGGTCAGAGCTTATGCATCCGATGACGGATCAACCTTCCGGATGGACTTTGCCAGGGCTATGATGAAGATGTCAAAGCTAAAGGCGGCCAACGGATCTCCAGGTCAGGTCAGGGTGGACTGCTCTTTGCCACTGCAGACTTCTTAA

Protein Analysis

405

Amino Acids

44.42

Weight (kDa)

6.12

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AccII CGCG 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 1107
AciI CCGC 4 cut(s) 108, 120, 235, 1154
AclWI GGATC 3 cut(s) 222, 1105, 1171
AcoI YGGCCR 1 cut(s) 1155
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 963
AfiI CCNNNNNNNGG 6 cut(s) 168, 267, 469, 880, 881, 893
AgsI TTSAA 3 cut(s) 221, 442, 1009
AjnI CCWGG 4 cut(s) 493, 599, 1121, 1168
AluBI AGCT 6 cut(s) 254, 319, 418, 1002, 1079, 1147
AluI AGCT 6 cut(s) 254, 319, 418, 1002, 1079, 1147
Alw21I GWGCWC 2 cut(s) 14, 480
Alw26I GTCTC 3 cut(s) 233, 251, 313
AlwI GGATC 3 cut(s) 222, 1105, 1171
AlwNI CAGNNNCTG 3 cut(s) 254, 322, 1042
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 4 cut(s) 559, 756, 884, 1155
ApeKI GCWGC 3 cut(s) 319, 322, 861
Asp700I GAANNNNTTC 2 cut(s) 23, 446
AspLEI GCGC 3 cut(s) 283, 327, 721
AspS9I GGNCC 5 cut(s) 460, 560, 603, 757, 884
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 460, 603
BbsI GAAGAC 2 cut(s) 704, 945
Bbv12I GWGCWC 2 cut(s) 14, 480
BbvI GCAGC 3 cut(s) 306, 309, 873
BccI CCATC 8 cut(s) 158, 194, 271, 533, 551, 973, 1039, 1105
BciT130I CCWGG 4 cut(s) 495, 601, 1123, 1170
BclI TGATCA 2 cut(s) 465, 1033
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 233, 251, 313
BfaI CTAG 2 cut(s) 716, 810
BfmI CTRYAG 1 cut(s) 1202
BisI GCNGC 4 cut(s) 320, 323, 862, 1155
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 4 cut(s) 321, 324, 863, 1156
Bme1390I CCNGG 5 cut(s) 495, 601, 882, 1123, 1170
Bme18I GGWCC 2 cut(s) 460, 603
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 5 cut(s) 460, 560, 603, 757, 884
BmiI GGNNCC 2 cut(s) 562, 885
BmrFI CCNGG 5 cut(s) 495, 601, 882, 1123, 1170
BmsI GCATC 3 cut(s) 352, 921, 1094
BpiI GAAGAC 2 cut(s) 704, 945
BplI GAGNNNNNCTC 4 cut(s) 87, 119, 1008, 1040
BpmI CTGGAG 1 cut(s) 1152
Bpu1102I GCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 881, 1122
BsaWI WCCGGW 2 cut(s) 571, 1107
BsaXI ACNNNNNCTCC 4 cut(s) 790, 820, 899, 929
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 267, 469, 880, 881, 893
Bse1I ACTGG 2 cut(s) 138, 586
Bse3DI GCAATG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 1107
BseBI CCWGG 4 cut(s) 495, 601, 1123, 1170
BseDI CCNNGG 2 cut(s) 881, 1122
BseGI GGATG 4 cut(s) 746, 936, 1085, 1116
BseLI CCNNNNNNNGG 6 cut(s) 168, 267, 469, 880, 881, 893
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 6 cut(s) 246, 329, 618, 671, 690, 914
BseNI ACTGG 2 cut(s) 138, 586
BseRI GAGGAG 3 cut(s) 103, 106, 1013
BseXI GCAGC 3 cut(s) 306, 309, 873
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 4 cut(s) 561, 758, 886, 1157
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 2 cut(s) 14, 480
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 3 cut(s) 572, 881, 1108
BslFI GGGAC 4 cut(s) 49, 793, 856, 933
BslI CCNNNNNNNGG 6 cut(s) 168, 267, 469, 880, 881, 893
BsmAI GTCTC 3 cut(s) 233, 251, 313
BsmFI GGGAC 4 cut(s) 49, 793, 856, 933
BsnI GGCC 4 cut(s) 561, 758, 886, 1157
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 14, 480
Bsp13I TCCGGA 1 cut(s) 1107
Bsp143I GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 4 cut(s) 108, 120, 235, 1154
BspANI GGCC 4 cut(s) 561, 758, 886, 1157
BspCNI CTCAG 6 cut(s) 247, 328, 619, 670, 689, 915
BspEI TCCGGA 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 562, 885
BspMAI CTGCAG 1 cut(s) 1206
BspPI GGATC 3 cut(s) 222, 1105, 1171
BspTNI GGTCTC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 138, 586
BssECI CCNNGG 2 cut(s) 881, 1122
BssMI GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
Bst2UI CCWGG 4 cut(s) 495, 601, 1123, 1170
Bst4CI ACNGT 2 cut(s) 706, 802
Bst6I CTCTTC 2 cut(s) 335, 583
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 6 cut(s) 255, 315, 627, 657, 676, 923
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 4 cut(s) 746, 936, 1085, 1116
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 3 cut(s) 283, 327, 721
BstKTI GATC 6 cut(s) 48, 217, 468, 1036, 1100, 1166
BstMAI GTCTC 3 cut(s) 233, 251, 313
BstMBI GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 4 cut(s) 495, 601, 1123, 1170
BstSCI CCNGG 5 cut(s) 493, 599, 880, 1121, 1168
BstSFI CTRYAG 1 cut(s) 1202
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 306, 309, 873
BstV2I GAAGAC 2 cut(s) 704, 945
BstX2I RGATCY 2 cut(s) 214, 1163
BstYI RGATCY 2 cut(s) 214, 1163
BsuRI GGCC 4 cut(s) 561, 758, 886, 1157
BtgZI GCGATG 1 cut(s) 855
BtsCI GGATG 4 cut(s) 746, 936, 1085, 1116
BtsI GCAGTG 1 cut(s) 1199
BtsIMutI CAGTG 5 cut(s) 131, 579, 684, 798, 1199
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 3 cut(s) 254, 322, 1042
CfoI GCGC 3 cut(s) 283, 327, 721
Cfr13I GGNCC 5 cut(s) 460, 560, 603, 757, 884
CsiI ACCWGGT 1 cut(s) 599
Csp6I GTAC 1 cut(s) 962
CviAII CATG 3 cut(s) 184, 338, 611
CviQI GTAC 1 cut(s) 962
DdeI CTNAG 6 cut(s) 255, 315, 627, 657, 676, 923
DpnI GATC 6 cut(s) 47, 216, 467, 1035, 1099, 1165
DpnII GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
EaeI YGGCCR 1 cut(s) 1155
Eam1104I CTCTTC 2 cut(s) 335, 583
EarI CTCTTC 2 cut(s) 335, 583
EciI GGCGGA 2 cut(s) 97, 109
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 460, 603
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 603
EcoRII CCWGG 4 cut(s) 493, 599, 1121, 1168
EcoT22I ATGCAT 1 cut(s) 1087
FaeI CATG 3 cut(s) 187, 341, 614
FaqI GGGAC 4 cut(s) 49, 793, 856, 933
FatI CATG 3 cut(s) 183, 337, 610
FbaI TGATCA 2 cut(s) 465, 1033
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 4 cut(s) 320, 323, 862, 1155
FokI GGATG 4 cut(s) 753, 943, 1072, 1123
Fsp4HI GCNGC 4 cut(s) 320, 323, 862, 1155
FspBI CTAG 2 cut(s) 716, 810
GlaI GCGC 3 cut(s) 282, 326, 720
GluI GCNGC 4 cut(s) 320, 323, 862, 1155
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 4 cut(s) 561, 758, 886, 1157
HapII CCGG 3 cut(s) 572, 881, 1108
HhaI GCGC 3 cut(s) 283, 327, 721
Hin1II CATG 3 cut(s) 187, 341, 614
Hin6I GCGC 3 cut(s) 281, 325, 719
HinP1I GCGC 3 cut(s) 281, 325, 719
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 4 cut(s) 86, 447, 631, 1020
HpaII CCGG 3 cut(s) 572, 881, 1108
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 4 cut(s) 273, 460, 579, 1186
Hpy188I TCNGA 7 cut(s) 91, 153, 163, 214, 660, 1076, 1090
Hpy188III TCNNGA 4 cut(s) 218, 817, 918, 1108
Hpy8I GTNNAC 4 cut(s) 273, 460, 579, 1186
Hpy99I CGWCG 4 cut(s) 32, 35, 277, 919
HpyAV CCTTC 3 cut(s) 436, 1003, 1114
HpyCH4III ACNGT 2 cut(s) 706, 802
HpyCH4V TGCA 4 cut(s) 878, 1064, 1085, 1204
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 6 cut(s) 255, 315, 627, 657, 676, 923
Hsp92II CATG 3 cut(s) 187, 341, 614
HspAI GCGC 3 cut(s) 281, 325, 719
Kpn2I TCCGGA 1 cut(s) 1107
Ksp22I TGATCA 2 cut(s) 465, 1033
Kzo9I GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
LmnI GCTCC 1 cut(s) 858
Lsp1109I GCAGC 3 cut(s) 306, 309, 873
LweI GCATC 3 cut(s) 352, 921, 1094
MabI ACCWGGT 1 cut(s) 599
MaeI CTAG 2 cut(s) 716, 810
MalI GATC 6 cut(s) 47, 216, 467, 1035, 1099, 1165
MboI GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
MboII GAAGA 9 cut(s) 40, 150, 313, 322, 325, 600, 704, 945, 1147
MflI RGATCY 2 cut(s) 214, 1163
MhlI GDGCHC 2 cut(s) 14, 480
MlyI GAGTC 1 cut(s) 1014
Mph1103I ATGCAT 1 cut(s) 1087
MroI TCCGGA 1 cut(s) 1107
MroXI GAANNNNTTC 2 cut(s) 23, 446
MseI TTAA 3 cut(s) 765, 774, 1213
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 3 cut(s) 572, 881, 1108
MspR9I CCNGG 5 cut(s) 495, 601, 882, 1123, 1170
MvaI CCWGG 4 cut(s) 495, 601, 1123, 1170
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 243
NciI CCSGG 1 cut(s) 882
NdeII GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
NlaIII CATG 3 cut(s) 187, 341, 614
NlaIV GGNNCC 2 cut(s) 562, 885
NsiI ATGCAT 1 cut(s) 1087
PdmI GAANNNNTTC 2 cut(s) 23, 446
PfeI GAWTC 3 cut(s) 86, 447, 631
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 4 cut(s) 321, 324, 863, 1156
PleI GAGTC 1 cut(s) 1014
PpsI GAGTC 1 cut(s) 1014
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 4 cut(s) 493, 599, 1121, 1168
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 4 cut(s) 493, 599, 1121, 1168
PspN4I GGNNCC 2 cut(s) 562, 885
PspPI GGNCC 5 cut(s) 460, 560, 603, 757, 884
PspPPI RGGWCCY 1 cut(s) 603
PstI CTGCAG 1 cut(s) 1206
PstNI CAGNNNCTG 3 cut(s) 254, 322, 1042
PsuI RGATCY 2 cut(s) 214, 1163
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 963
RsaNI GTAC 1 cut(s) 962
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 765, 774, 1213
SatI GCNGC 4 cut(s) 320, 323, 862, 1155
Sau3AI GATC 6 cut(s) 45, 214, 465, 1033, 1097, 1163
Sau96I GGNCC 5 cut(s) 460, 560, 603, 757, 884
SchI GAGTC 1 cut(s) 1014
ScrFI CCNGG 5 cut(s) 495, 601, 882, 1123, 1170
SduI GDGCHC 2 cut(s) 14, 480
SexAI ACCWGGT 1 cut(s) 599
SfaNI GCATC 3 cut(s) 352, 921, 1094
SfcI CTRYAG 1 cut(s) 1202
SinI GGWCC 2 cut(s) 460, 603
SsiI CCGC 4 cut(s) 108, 120, 235, 1154
SspMI CTAG 2 cut(s) 716, 810
StyD4I CCNGG 5 cut(s) 493, 599, 880, 1121, 1168
TaaI ACNGT 2 cut(s) 706, 802
TaqI TCGA 3 cut(s) 272, 450, 480
TaqII GACCGA 1 cut(s) 711
TauI GCSGC 1 cut(s) 1157
TfiI GAWTC 3 cut(s) 86, 447, 631
Tru1I TTAA 3 cut(s) 765, 774, 1213
Tru9I TTAA 3 cut(s) 765, 774, 1213
TscAI CASTG 5 cut(s) 138, 586, 684, 805, 1206
TseI GCWGC 3 cut(s) 319, 322, 861
TspDTI ATGAA 7 cut(s) 32, 209, 337, 630, 656, 739, 1148
TspGWI ACGGA 3 cut(s) 949, 1110, 1176
TspRI CASTG 5 cut(s) 138, 586, 684, 805, 1206
VpaK11BI GGWCC 2 cut(s) 460, 603
XagI CCTNNNNNAGG 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 2 cut(s) 23, 446
XspI CTAG 2 cut(s) 716, 810
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.