Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002083.1

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

136594 .. 141280

Gene Structure 4687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002083.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcctggaagtctcttgggaggtggttgggctagatggtttgatgatgagcatatattggacgaagtctttggcgcgatggcggcagtgcgacacggtggtgaggtccggcgttgggttgcggtggcgaggtctggcgctgggttgtggcagtcgacaaccaatgaggctgaagatggactttgggcttgggtaaagccattctttgttgggcctaagttcggtagcgatttgtgtcagaaggcacttgagttggtggattcgggttggaatcacagatcagaggtagctgctaacggcgttgtgattagatcagaggtcgattggagcgttcttgaacgatgccgttgcagacctcacgagctcaccggcgccgttgaagaagaagaagaagaagaagatgttgttcgagatgaaagcgtggctagtcttcgccgtggcggtgatcatctctctgcgaatctccttgaaaaatccgagaaccggcgaatcgaacatgaagccccctctctctcttcctccgacaaaccgctcgtcgcttttgtttctctcgcttctggcgacagcggcctagacgatttcttctccgagacgacgacgacggacttgacgtcgcagaatctcgagtacgacttctaccggaacacgtgtcctcaggccgaggggatggtgaggtcgaagatggcatggatttacgggcaacacaggaacgcctcggctcagatgcttcgtctctttttccatgactgcttcattgaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

254

Amino Acids

28.44

Weight (kDa)

4.81

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	83, 122, 441, 530, 567
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	648
AcyI	GRCGYC	2 cut(s)	372, 611
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	3 cut(s)	115, 221, 483
AflIII	ACRYGT	2 cut(s)	645, 647
AgsI	TTSAA	3 cut(s)	338, 380, 470
AhdI	GACNNNNNGTC	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	290, 364
AluI	AGCT	2 cut(s)	290, 364
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	17, 584, 737
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	212, 568, 657
ApeKI	GCWGC	1 cut(s)	290
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 519, 551
AspLEI	GCGC	3 cut(s)	77, 140, 374
AspS9I	GGNCC	2 cut(s)	106, 212
AsuHPI	GGTGA	4 cut(s)	113, 358, 455, 682
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	359
BbrPI	CACGTG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	5 cut(s)	30, 73, 170, 661, 676
BceAI	ACGGC	4 cut(s)	313, 330, 359, 420
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	17, 584, 737
BfaI	CTAG	3 cut(s)	33, 426, 572
BfoI	RGCGCY	2 cut(s)	141, 375
BisI	GCNGC	3 cut(s)	84, 291, 568
BlsI	GCNGC	3 cut(s)	85, 292, 569
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	106, 212
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	332, 714
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	648
BsaHI	GRCGYC	2 cut(s)	372, 611
BsaJI	CCNNGG	3 cut(s)	436, 660, 714
BsaWI	WCCGGW	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 221, 483
Bse118I	RCCGGY	2 cut(s)	368, 483
Bse21I	CCTNAGG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	436, 660, 714
BseGI	GGATG	1 cut(s)	672
BseLI	CCNNNNNNNGG	3 cut(s)	115, 221, 483
BseMII	CTCAG	2 cut(s)	668, 734
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	214, 570, 659
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	4 cut(s)	109, 369, 484, 640
BslI	CCNNNNNNNGG	3 cut(s)	115, 221, 483
BsmAI	GTCTC	3 cut(s)	17, 584, 737
BsmBI	CGTCTC	2 cut(s)	584, 737
BsnI	GGCC	3 cut(s)	214, 570, 659
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	278, 311, 445
BspACI	CCGC	5 cut(s)	83, 122, 441, 530, 567
BspANI	GGCC	3 cut(s)	214, 570, 659
BspCNI	CTCAG	2 cut(s)	667, 733
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	532
BsrFI	RCCGGY	2 cut(s)	368, 483
BssAI	RCCGGY	2 cut(s)	368, 483
BssECI	CCNNGG	3 cut(s)	436, 660, 714
BssMI	GATC	3 cut(s)	278, 311, 445
BssNI	GRCGYC	2 cut(s)	372, 611
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	2 cut(s)	372, 611
BstBAI	YACGTR	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	216, 654, 720
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	672
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	2 cut(s)	141, 375
BstHHI	GCGC	3 cut(s)	77, 140, 374
BstKTI	GATC	3 cut(s)	281, 314, 448
BstMAI	GTCTC	3 cut(s)	17, 584, 737
BstMBI	GATC	3 cut(s)	278, 311, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 567
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	214, 570, 659
BtgI	CCRYGG	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
CfoI	GCGC	3 cut(s)	77, 140, 374
Cfr10I	RCCGGY	2 cut(s)	368, 483
Cfr13I	GGNCC	2 cut(s)	106, 212
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	3 cut(s)	497, 687, 743
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	216, 654, 720
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	3 cut(s)	280, 313, 447
DpnII	GATC	3 cut(s)	278, 311, 445
DriI	GACNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
Esp3I	CGTCTC	2 cut(s)	584, 737
FaeI	CATG	3 cut(s)	500, 690, 746
FaiI	YATR	6 cut(s)	54, 56, 498, 688, 744, 763
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 188, 220
FatI	CATG	3 cut(s)	496, 686, 742
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	84, 291, 568
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	84, 291, 568
FspBI	CTAG	3 cut(s)	33, 426, 572
GlaI	GCGC	3 cut(s)	76, 139, 373
GluI	GCNGC	3 cut(s)	84, 291, 568
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	141, 375
HaeIII	GGCC	3 cut(s)	214, 570, 659
HapII	CCGG	4 cut(s)	109, 369, 484, 640
HhaI	GCGC	3 cut(s)	77, 140, 374
Hin1I	GRCGYC	2 cut(s)	372, 611
Hin1II	CATG	3 cut(s)	500, 690, 746
Hin6I	GCGC	3 cut(s)	75, 138, 372
HinP1I	GCGC	3 cut(s)	75, 138, 372
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	5 cut(s)	260, 271, 460, 489, 619
HpaII	CCGG	4 cut(s)	109, 369, 484, 640
HphI	GGTGA	4 cut(s)	113, 358, 455, 682
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	7 cut(s)	240, 283, 316, 478, 523, 589, 723
Hpy188III	TCNNGA	4 cut(s)	335, 359, 410, 623
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	5 cut(s)	539, 598, 601, 604, 616
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	611, 647
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 567
HpyF3I	CTNAG	3 cut(s)	216, 654, 720
HpySE526I	ACGT	2 cut(s)	611, 647
Hsp92I	GRCGYC	2 cut(s)	372, 611
Hsp92II	CATG	3 cut(s)	500, 690, 746
HspAI	GCGC	3 cut(s)	75, 138, 372
KasI	GGCGCC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	278, 311, 445
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	332, 714
MaeI	CTAG	3 cut(s)	33, 426, 572
MaeII	ACGT	2 cut(s)	611, 647
MalI	GATC	3 cut(s)	280, 313, 447
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	3 cut(s)	278, 311, 445
MhlI	GDGCHC	1 cut(s)	366
Mly113I	GGCGCC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	248, 546
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	567
MspI	CCGG	4 cut(s)	109, 369, 484, 640
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	83, 567
NarI	GGCGCC	1 cut(s)	372
NdeII	GATC	3 cut(s)	278, 311, 445
NlaIII	CATG	3 cut(s)	500, 690, 746
NlaIV	GGNNCC	1 cut(s)	373
NmeAIII	GCCGAG	2 cut(s)	685, 695
OliI	CACNNNNGTG	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	3 cut(s)	327, 558, 608
PfeI	GAWTC	5 cut(s)	260, 271, 460, 489, 619
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	85, 292, 569
PluTI	GGCGCC	1 cut(s)	375
PmaCI	CACGTG	1 cut(s)	648
PmlI	CACGTG	1 cut(s)	648
Ppu21I	YACGTR	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	4
PspCI	CACGTG	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	106, 212
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	154
SatI	GCNGC	3 cut(s)	84, 291, 568
Sau3AI	GATC	3 cut(s)	278, 311, 445
Sau96I	GGNCC	2 cut(s)	106, 212
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	332, 714
SfoI	GGCGCC	1 cut(s)	373
Sfr274I	CTCGAG	1 cut(s)	623
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	248, 623
SmoI	CTYRAG	2 cut(s)	248, 623
SsiI	CCGC	5 cut(s)	83, 122, 441, 530, 567
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	3 cut(s)	33, 426, 572
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	614, 650
TaqI	TCGA	6 cut(s)	155, 321, 409, 492, 624, 677
TauI	GCSGC	2 cut(s)	86, 570
TfiI	GAWTC	5 cut(s)	260, 271, 460, 489, 619
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	429, 513, 742
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	3 cut(s)	33, 426, 572
ZraI	GACGTC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.