Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

20813164 .. 20813421

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAGGAGATGAATGATAGAGGTCAATCGGATCTTGAATACGATTTCTACCGCGAGACTTGCCCAAAAACTGAGACCATTGTGAGGTCGACGATGGCGCAAATTTACTCCCACCAGAAGAATGTCTCTGCTCAGCTGCTGCGCCTCTTCTTCTGTGACTGCTTCATTCAGGTACATCCCAAGCCCCAAGATTCTTTTTTGTCTTCATCTTTGTGGCTATTTCTCATATGGGTTTTGTTCTTATTGCTCTACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

86

Amino Acids

10.22

Weight (kDa)

5.13

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	3 cut(s)	50, 68, 130
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	136, 139
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	100, 144
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	123, 126
BccI	CCATC	1 cut(s)	88
BcoDI	GTCTC	3 cut(s)	50, 68, 130
BisI	GCNGC	2 cut(s)	137, 140
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	138, 141
BpiI	GAAGAC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	63, 146
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	123, 126
Bsh1236I	CGCG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	50, 68, 130
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	64, 145
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	68
BssMI	GATC	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	72, 132
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	100, 144
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	3 cut(s)	50, 68, 130
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	123, 126
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	2 cut(s)	100, 144
Csp6I	GTAC	1 cut(s)	173
CviJI	RGCY	3 cut(s)	136, 184, 217
CviKI_1	RGCY	3 cut(s)	136, 184, 217
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	72, 132
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	68
FaiI	YATR	2 cut(s)	227, 229
FauNDI	CATATG	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	137, 140
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	137, 140
GlaI	GCGC	2 cut(s)	99, 143
GluI	GCNGC	2 cut(s)	137, 140
HhaI	GCGC	2 cut(s)	100, 144
Hin6I	GCGC	2 cut(s)	98, 142
HinP1I	GCGC	2 cut(s)	98, 142
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	72, 132
HspAI	GCGC	2 cut(s)	98, 142
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	128, 155
Lsp1109I	GCAGC	2 cut(s)	123, 126
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	130, 139, 142, 195
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	3 cut(s)	14, 78, 155
MseI	TTAA	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	138, 141
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	2 cut(s)	137, 140
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	4 cut(s)	25, 89, 138, 174
SgeI	CNNG	8 cut(s)	47, 65, 67, 72, 127, 182, 193, 200
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	52
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	136, 139
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	26, 154, 195
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.