Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

75592158 .. 75594119

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGCCCTCTCTCTCTTCCTCCGACGAACCGCTCGTCTCTTTCGTTTCTCTCGCTTCTGGCGACGGCGGCCTAGACGACTTCTTCTCCGAGACGACGACGACGGACTTGACGTCGCAGACTCTCGAGTACGACTTCTACCGGAACACGTGTCCTCAGGCCGAGGGGATCGTGAGGTCGAAGATGGCTTGGATTTACGGCCAGCACAGGAACGCCTCGGCTCAGTTGCTTCGTCTCTTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTGCTCTTGGATGACAGCAATGGGAATACAAACCATGCCATAGAGAAGCAGGCTATACCCAATAAGTCCTTGAAGGGCTTTGATAAAATTGATCAGATCAAGGAGATGCTTGAAAATGAATGTCCGGGGGTGGTATCTTGTGCCGACATACTTACTCTCGCCACCAGAGATGCCATTGTTCTGTTCCTTGGAAAATCCCCTTCACATCAGAAAAGCTGTGACGTTTCTGATGTATTCGTAATATCTGAAATGGCAGGCTGGTGGCCCCTTCTATCCAATTTTGACCGGAAGAAGAGACAGTACCCGCTCATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

197

Amino Acids

21.94

Weight (kDa)

4.84

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	58 - 157	4.8e-31	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
AccBSI	CCGCTC	2 cut(s)	34, 583
AciI	CCGC	3 cut(s)	32, 69, 581
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	199
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	131, 578
AflIII	ACRYGT	2 cut(s)	147, 149
AgsI	TTSAA	2 cut(s)	349, 389
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	1 cut(s)	492
AluI	AGCT	1 cut(s)	492
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	4 cut(s)	43, 86, 239, 565
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	4 cut(s)	70, 159, 199, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbrPI	CACGTG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	282
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	82, 214
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	4 cut(s)	43, 86, 239, 565
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	402
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	259, 372, 436
BpuMI	CCSGG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	162, 216, 401, 463
BsaWI	WCCGGW	2 cut(s)	141, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	162, 216, 401, 463
BseGI	GGATG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	170, 236
BshFI	GGCC	4 cut(s)	72, 161, 201, 541
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	142, 401, 562
BsmAI	GTCTC	4 cut(s)	43, 86, 239, 565
BsmBI	CGTCTC	3 cut(s)	43, 86, 239
BsnI	GGCC	4 cut(s)	72, 161, 201, 541
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	168, 367, 372
BspACI	CCGC	3 cut(s)	32, 69, 581
BspANI	GGCC	4 cut(s)	72, 161, 201, 541
BspCNI	CTCAG	2 cut(s)	169, 235
BspLI	GGNNCC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	176
BsrBI	CCGCTC	2 cut(s)	34, 583
BsrDI	GCAATG	1 cut(s)	301
BssECI	CCNNGG	4 cut(s)	162, 216, 401, 463
BssMI	GATC	3 cut(s)	168, 367, 372
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	22, 563
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	203, 327, 532
BstDEI	CTNAG	2 cut(s)	156, 222
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	171, 370, 375
BstMAI	GTCTC	4 cut(s)	43, 86, 239, 565
BstMBI	GATC	3 cut(s)	168, 367, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	72, 161, 201, 541
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	203, 327, 532
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	130, 577
CviAII	CATG	2 cut(s)	245, 311
CviQI	GTAC	2 cut(s)	130, 577
DdeI	CTNAG	2 cut(s)	156, 222
DpnI	GATC	3 cut(s)	170, 369, 374
DpnII	GATC	3 cut(s)	168, 367, 372
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	22, 563
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	22, 563
Eco130I	CCWWGG	1 cut(s)	463
Eco72I	CACGTG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	463
Esp3I	CGTCTC	3 cut(s)	43, 86, 239
FaeI	CATG	2 cut(s)	248, 314
FaiI	YATR	5 cut(s)	246, 312, 317, 332, 425
FatI	CATG	2 cut(s)	244, 310
FauI	CCCGC	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	72, 161, 201, 541
HapII	CCGG	3 cut(s)	142, 401, 562
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	248, 314
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	142, 401, 562
Hpy188I	TCNGA	6 cut(s)	25, 91, 372, 486, 505, 523
Hpy188III	TCNNGA	2 cut(s)	125, 172
Hpy99I	CGWCG	6 cut(s)	29, 68, 100, 103, 106, 118
HpyAV	CCTTC	3 cut(s)	343, 486, 554
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	3 cut(s)	113, 149, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	156, 222
HpySE526I	ACGT	3 cut(s)	113, 149, 498
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	248, 314
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	168, 367, 372
LweI	GCATC	3 cut(s)	259, 372, 436
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	3 cut(s)	113, 149, 498
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	170, 369, 374
MbiI	CCGCTC	2 cut(s)	34, 583
MboI	GATC	3 cut(s)	168, 367, 372
MboII	GAAGA	5 cut(s)	9, 76, 193, 577, 580
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	363, 553
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	7 cut(s)	19, 31, 157, 165, 168, 226, 253
MseI	TTAA	1 cut(s)	592
MspI	CCGG	3 cut(s)	142, 401, 562
MspR9I	CCNGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	168, 367, 372
NlaIII	CATG	2 cut(s)	248, 314
NlaIV	GGNNCC	1 cut(s)	542
NmeAIII	GCCGAG	2 cut(s)	187, 197
NmuCI	GTSAC	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 42, 60, 110
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	150
PspCI	CACGTG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	540
RsaI	GTAC	2 cut(s)	131, 578
RsaNI	GTAC	2 cut(s)	130, 577
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	3 cut(s)	168, 367, 372
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	116, 152, 179, 494, 501
SfaNI	GCATC	3 cut(s)	259, 372, 436
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	363, 553
SsiI	CCGC	3 cut(s)	32, 69, 581
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	3 cut(s)	116, 152, 501
TaqI	TCGA	2 cut(s)	126, 179
TasI	AATT	2 cut(s)	363, 553
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	17, 244, 408
TspGWI	ACGGA	2 cut(s)	119, 265
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.