Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

20240706 .. 20242245

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTGGGCACAGTGAAGGCGCGTTGGGTGTTCGCGAAGGTGGTGTTTTTCTCGGTGGTGGTTTCGCGGAGCAAACCGAGAGTTGAGTCGGAGAGAGAGAAGCCTTCTCTCTCTTCTTCTTCTTCTTCGCCGGCGAAGTCGTCGTCGGCGTCCGAAGAGCCACTGGTCACTCTGTTATCTATGGCTTCTAGCGACGGAGGCCAAGAAGAGTTCTACACCGAAACGACGACGGATGAGGGGTCACGGAATCTGGAGTATGATTTCTATCGGAACTCGTCTATTTATCTGTCATTCTTAATGTTGTGGGGCTTCTTGAATCAGGGGTGTGATGCATCCGTTCTCTTGGATGACAGCAATGGGGATAAAAACCATTCTATAGAGAACCAGGCTACACCAAATAGGTCCTTGAAGGGATTCGATAAAATTGATCAGATCAAGGTGGAGCTCGAAAATGTTTGTCCAGGGGTGGTATCTTGTGCCGATGTACTTGCTCTTGCCGCCAGAGATGGCATTATTCTGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

175

Amino Acids

19.12

Weight (kDa)

4.77

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	106 - 172	3.2e-19	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	22, 35, 67
AciI	CCGC	2 cut(s)	67, 498
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	316, 409
AjnI	CCWGG	2 cut(s)	384, 460
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw21I	GWGCWC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	2 cut(s)	386, 462
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	386, 462
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	386, 462
BmsI	GCATC	2 cut(s)	319, 341
BpmI	CTGGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	386, 462
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	3 cut(s)	238, 332, 352
BseJI	GATNNNNATC	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	11
Bsh1236I	CGCG	3 cut(s)	22, 35, 67
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	11, 447
Bsp143I	GATC	2 cut(s)	427, 432
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	2 cut(s)	67, 498
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	3 cut(s)	22, 35, 67
BspQI	GCTCTTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	427, 432
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	386, 462
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	3 cut(s)	118, 150, 201
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	238, 332, 352
BstFNI	CGCG	3 cut(s)	22, 35, 67
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	430, 435
BstMBI	GATC	2 cut(s)	427, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 497
BstNI	CCWGG	2 cut(s)	386, 462
BstSCI	CCNGG	2 cut(s)	384, 460
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	3 cut(s)	22, 35, 67
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	238, 332, 352
BtsIMutI	CAGTG	2 cut(s)	18, 161
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	402
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	485
CviJI	RGCY	7 cut(s)	103, 160, 185, 201, 309, 389, 445
CviKI_1	RGCY	7 cut(s)	103, 160, 185, 201, 309, 389, 445
CviQI	GTAC	1 cut(s)	485
DpnI	GATC	2 cut(s)	429, 434
DpnII	GATC	2 cut(s)	427, 432
Eam1104I	CTCTTC	3 cut(s)	118, 150, 201
EarI	CTCTTC	3 cut(s)	118, 150, 201
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	384, 460
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	447
FaiI	YATR	3 cut(s)	182, 258, 377
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	245, 319, 359
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	4 cut(s)	86, 247, 316, 414
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	91, 154, 270, 432
Hpy188III	TCNNGA	3 cut(s)	34, 251, 313
Hpy99I	CGWCG	5 cut(s)	145, 148, 197, 229, 232
HpyAV	CCTTC	4 cut(s)	10, 31, 114, 403
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 497
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	427, 432
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	69, 442
LweI	GCATC	2 cut(s)	319, 341
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	166, 240
MalI	GATC	2 cut(s)	429, 434
MboI	GATC	2 cut(s)	427, 432
MboII	GAAGA	7 cut(s)	105, 108, 111, 114, 117, 167, 218
MhlI	GDGCHC	2 cut(s)	11, 447
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	2 cut(s)	191, 229
Mph1103I	ATGCAT	1 cut(s)	334
MreI	CGCCGGCG	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	2 cut(s)	296, 526
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	386, 462
MvaI	CCWGG	2 cut(s)	386, 462
MvnI	CGCG	3 cut(s)	22, 35, 67
MwoI	GCNNNNNNNGC	2 cut(s)	198, 497
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	2 cut(s)	427, 432
NgoMIV	GCCGGC	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	166, 240
NruI	TCGCGA	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	247, 316, 414
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	384, 460
PspGI	CCWGG	2 cut(s)	384, 460
PspPI	GGNCC	1 cut(s)	402
PspPPI	RGGWCCY	1 cut(s)	402
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	296, 526
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	2 cut(s)	427, 432
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	386, 462
SduI	GDGCHC	2 cut(s)	11, 447
SetI	ASST	4 cut(s)	42, 404, 441, 447
SfaNI	GCATC	2 cut(s)	319, 341
SfcI	CTRYAG	1 cut(s)	375
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	402
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	2 cut(s)	67, 498
SspMI	CTAG	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	384, 460
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	417, 447
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	247, 316, 414
Tru1I	TTAA	2 cut(s)	296, 526
Tru9I	TTAA	2 cut(s)	296, 526
TscAI	CASTG	2 cut(s)	18, 168
TseFI	GTSAC	2 cut(s)	166, 240
Tsp45I	GTSAC	2 cut(s)	166, 240
TspGWI	ACGGA	4 cut(s)	210, 245, 259, 325
TspRI	CASTG	2 cut(s)	18, 168
VpaK11BI	GGWCC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.