MD17G1260000.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
32059615 .. 32062254
2640 bp
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UTR
Exon/CDS
Intron
MD17G1260000.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGTGCAGATTTATTCCCACCAGAAGAATGTCTCTGCTCAGCTGCTGCGCCTCTTCTTCCGTGACTGCTTCATTCAGAAGAAAAACGTTGCTAATGATTTACCTGTGATGATGCAACAAACTTGGTTGCATGGCAAGTTGGAAATGCACAAAAGTTTGATAACGTCCTATAGAATTGCCAGAGAAGGTCATCTCCATTTTGTGCAAAATCAGCCTTCTTTCTGCACACAAAAACACTAG

Protein Analysis

80

Amino Acids

9.43

Weight (kDa)

9.83

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 87
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 43, 46
AspLEI GCGC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 30, 33
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 44, 47
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 2 cut(s) 45, 48
BmsI GCATC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 39
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 30, 33
BsgI GTGCAG 2 cut(s) 26, 208
BsmAI GTCTC 1 cut(s) 37
Bsp1720I GCTNAGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 30, 33
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 51
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 43, 214
CviKI_1 RGCY 2 cut(s) 43, 214
DdeI CTNAG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
FaeI CATG 1 cut(s) 134
FaiI YATR 2 cut(s) 132, 171
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 44, 47
Fsp4HI GCNGC 2 cut(s) 44, 47
FspBI CTAG 1 cut(s) 238
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 44, 47
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 179, 225
HpyCH4IV ACGT 2 cut(s) 87, 164
HpyCH4V TGCA 6 cut(s) 7, 115, 130, 148, 205, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 87, 164
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 49
LpnPI CCDG 3 cut(s) 35, 117, 193
Lsp1109I GCAGC 2 cut(s) 30, 33
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 238
MaeII ACGT 2 cut(s) 87, 164
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 4 cut(s) 37, 46, 49, 91
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 211
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 45, 48
Psp1406I AACGTT 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 43
SatI GCNGC 2 cut(s) 44, 47
SetI ASST 5 cut(s) 45, 90, 106, 167, 190
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 169
SgeI CNNG 7 cut(s) 34, 74, 116, 135, 143, 148, 192
Sse9I AATT 1 cut(s) 174
SspMI CTAG 1 cut(s) 238
TaiI ACGT 2 cut(s) 90, 167
TasI AATT 1 cut(s) 174
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 2 cut(s) 43, 46
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 50
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.