Rorug05G0087600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
7551685 .. 7553839
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0087600.1

Sequence Viewer

Length: 1350 bp
ATGGATACTATCAGACCCAAATCGGCTCCGATCAAGCGGAGCAAGCTGGTCAGGACTTTCCACAAGGTCATCAGCCTCCGAGCCGCCACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAACCGAATACCAAAGCCACCAAAGAGGAGTACGATTTCGAAAAGATGGAGGATCTCAAAGCCAAGAACAGAGCAGTCATGGAGGCTTTACTGGCCAAGCTCTTCGCCGGAATCACTTCCATTAAAGCATCCTATGCCGAGCTCCAAATGGCACAAGACCCTTACAACAACGAAGCCATTCAGGTGGCTGACCAGGCCGTAGTGGACGAGCTGAAAGCCATTTCAGAACTCAAACGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAAGTGACTCTAATGCTGGCGGAGATTCAAGAACAACAGGGACTAATGAAGACATACGAGATCACCATCAAGAAACTAGAGTCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCGAAGAATTAGTCTCAACCAACAACTCCTTCGAATACAAGCTCAAATCCAGCGGACCTCTCTCAATCTTCGACAACCTTCGCCTCCCAAAGCTAACCGCAACCCATTTCGCTCAGTTTCAGCAGCAGACGGTAAGATCCATACGAAGCTTTGTCAGATTGATGATCAAAGATATGGAATCCGCAAGCTGGGACCTCGACACAGCCATCAAGTTCATCGAGCCAGAAGCAGAGTTCTCGAAACAGAGCCATCGCTGCTTCGCATTCGAGTCCTTCGTCAGCAAAACCATGCTCGAAGGCTTCAACAACCCCAACTTCGGACTCCCCAGCGACTCATTCCCTCCCAATCACAAAACCCACCACCACTTTTTCGACCAGTTCAACAAGCTCAACCCCGCAAACCCAAAATCGTTCCTCGCCCAAAACCACAGCGCGTCGTTTTGCAAGTTCACCAGAGCCAAGTACCTCCAACTAGTCCACGCCAAAATGGAGTGCTCCCTCTTCGGAAACTTAAACCAGAGAAAGCTCATAAACTCCGGCGAGGTTCCCGACACTCCGTTTTTCGAAGCCTTTGCAGAAATGTCGATGCGGGTTTGGCTTCTACACTGCTTGGCATTCTCGTTCGGTCAACAAGTCTCCATCTTTCACGTCAACAAAAACCGCAGATTTTCAGAGGTGTTCATGGAGTCCGTCACCGTCAACAACGACTCCGACACCGAGTTTTCCGTCAGCTTCACCGTCGTGCCGGGGTTCAGAATCGGGAAGACGGTGTTTCAGAGCCTGGTTTACTTGTCTCCGGTGAGTAATCTCCGGCGAATTTGCGACTAA

Protein Analysis

449

Amino Acids

51.17

Weight (kDa)

9.14

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 64 - 187 1.5e-39 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 388 - 437 2.2e-16 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 956
AclWI GGATC 2 cut(s) 183, 654
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 1338
AfaI GTAC 2 cut(s) 155, 986
AfiI CCNNNNNNNGG 2 cut(s) 711, 839
AgsI TTSAA 4 cut(s) 370, 422, 826, 904
AhlI ACTAGT 1 cut(s) 994
AjiI CACGTC 1 cut(s) 1171
AjnI CCWGG 2 cut(s) 315, 1302
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AleI CACNNNNGTG 1 cut(s) 1262
Alw21I GWGCWC 3 cut(s) 267, 381, 1019
Alw26I GTCTC 3 cut(s) 541, 1162, 1320
AlwI GGATC 2 cut(s) 183, 654
AlwNI CAGNNNCTG 1 cut(s) 1303
AoxI GGCC 2 cut(s) 216, 318
ApeKI GCWGC 3 cut(s) 360, 646, 777
ApoI RAATTY 1 cut(s) 1338
ArsI GACNNNNNNTTYG 2 cut(s) 519, 551
Asp700I GAANNNNTTC 2 cut(s) 238, 300
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 2 cut(s) 578, 715
AsuC2I CCSGG 1 cut(s) 1269
AsuHPI GGTGA 6 cut(s) 448, 476, 964, 1207, 1249, 1333
AsuII TTCGAA 3 cut(s) 162, 555, 1086
AvaII GGWCC 2 cut(s) 578, 715
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 2 cut(s) 267, 381
BbsI GAAGAC 2 cut(s) 449, 1292
Bbv12I GWGCWC 3 cut(s) 267, 381, 1019
BbvI GCAGC 3 cut(s) 372, 658, 764
BccI CCATC 5 cut(s) 163, 467, 737, 780, 1169
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 6 cut(s) 741, 775, 1076, 1086, 1110, 1120
BciT130I CCWGG 2 cut(s) 317, 1304
BclI TGATCA 1 cut(s) 687
BcnI CCSGG 1 cut(s) 1269
BcoDI GTCTC 3 cut(s) 541, 1162, 1320
BcuI ACTAGT 1 cut(s) 994
BfaI CTAG 2 cut(s) 470, 995
BisI GCNGC 5 cut(s) 84, 361, 392, 647, 778
BlsI GCNGC 5 cut(s) 85, 362, 393, 648, 779
Bme1390I CCNGG 3 cut(s) 317, 1269, 1304
Bme18I GGWCC 2 cut(s) 578, 715
BmgBI CACGTC 1 cut(s) 1171
BmgT120I GGNCC 2 cut(s) 578, 715
BmiI GGNNCC 3 cut(s) 27, 716, 1068
BmrFI CCNGG 3 cut(s) 317, 1269, 1304
BmsI GCATC 2 cut(s) 260, 1098
BpiI GAAGAC 2 cut(s) 449, 1292
Bpu14I TTCGAA 3 cut(s) 162, 555, 1086
BpuMI CCSGG 1 cut(s) 1269
BsaBI GATNNNNATC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 1268
BsaWI WCCGGW 1 cut(s) 1318
BsaXI ACNNNNNCTCC 2 cut(s) 1214, 1244
Bsc4I CCNNNNNNNGG 2 cut(s) 711, 839
Bse1I ACTGG 2 cut(s) 219, 898
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 2 cut(s) 317, 1304
BseDI CCNNGG 1 cut(s) 1268
BseGI GGATG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 2 cut(s) 711, 839
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 2 cut(s) 219, 898
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 372, 658, 764
BseYI CCCAGC 2 cut(s) 711, 848
Bsh1236I CGCG 1 cut(s) 956
BshFI GGCC 2 cut(s) 218, 320
BsiHKAI GWGCWC 3 cut(s) 267, 381, 1019
BsiSI CCGG 5 cut(s) 231, 1059, 1268, 1319, 1333
BslFI GGGAC 2 cut(s) 447, 728
BslI CCNNNNNNNGG 2 cut(s) 711, 839
BsmAI GTCTC 3 cut(s) 541, 1162, 1320
BsmFI GGGAC 2 cut(s) 447, 728
BsmI GAATGC 2 cut(s) 785, 1136
BsnI GGCC 2 cut(s) 218, 320
Bsp119I TTCGAA 3 cut(s) 162, 555, 1086
Bsp1286I GDGCHC 3 cut(s) 267, 381, 1019
Bsp143I GATC 6 cut(s) 30, 175, 382, 453, 659, 687
BspANI GGCC 2 cut(s) 218, 320
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 1 cut(s) 956
BspLI GGNNCC 3 cut(s) 27, 716, 1068
BspPI GGATC 2 cut(s) 183, 654
BspQI GCTCTTC 1 cut(s) 230
BspT104I TTCGAA 3 cut(s) 162, 555, 1086
BsrI ACTGG 2 cut(s) 219, 898
BssECI CCNNGG 1 cut(s) 1268
BssMI GATC 6 cut(s) 30, 175, 382, 453, 659, 687
Bst2UI CCWGG 2 cut(s) 317, 1304
Bst4CI ACNGT 4 cut(s) 655, 1219, 1261, 1291
Bst6I CTCTTC 2 cut(s) 230, 1028
BstAPI GCANNNNNTGC 1 cut(s) 257
BstBI TTCGAA 3 cut(s) 162, 555, 1086
BstC8I GCNNGC 4 cut(s) 44, 119, 411, 709
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 956
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 6 cut(s) 33, 178, 385, 456, 662, 690
BstMAI GTCTC 3 cut(s) 541, 1162, 1320
BstMBI GATC 6 cut(s) 30, 175, 382, 453, 659, 687
BstMWI GCNNNNNNNGC 6 cut(s) 43, 215, 257, 317, 777, 1117
BstNI CCWGG 2 cut(s) 317, 1304
BstSCI CCNGG 3 cut(s) 315, 1267, 1302
BstUI CGCG 1 cut(s) 956
BstV1I GCAGC 3 cut(s) 372, 658, 764
BstV2I GAAGAC 2 cut(s) 449, 1292
BstX2I RGATCY 2 cut(s) 175, 659
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 2 cut(s) 175, 659
BsuRI GGCC 2 cut(s) 218, 320
BtgZI GCGATG 1 cut(s) 758
BtrI CACGTC 1 cut(s) 1171
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 1 cut(s) 1126
Cac8I GCNNGC 4 cut(s) 44, 119, 411, 709
CaiI CAGNNNCTG 1 cut(s) 1303
CfoI GCGC 1 cut(s) 956
Cfr13I GGNCC 2 cut(s) 578, 715
CseI GACGC 1 cut(s) 945
Csp6I GTAC 2 cut(s) 154, 985
CviAII CATG 3 cut(s) 202, 811, 1204
CviQI GTAC 2 cut(s) 154, 985
DdeI CTNAG 1 cut(s) 636
DpnI GATC 6 cut(s) 32, 177, 384, 455, 661, 689
DpnII GATC 6 cut(s) 30, 175, 382, 453, 659, 687
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 230, 1028
EarI CTCTTC 2 cut(s) 230, 1028
EciI GGCGGA 1 cut(s) 428
Ecl136II GAGCTC 2 cut(s) 265, 379
Eco24I GRGCYC 2 cut(s) 267, 381
Eco47I GGWCC 2 cut(s) 578, 715
Eco53kI GAGCTC 2 cut(s) 265, 379
EcoICRI GAGCTC 2 cut(s) 265, 379
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 2 cut(s) 315, 1302
EcoT38I GRGCYC 2 cut(s) 267, 381
FaeI CATG 3 cut(s) 205, 814, 1207
FaiI YATR 8 cut(s) 203, 258, 448, 665, 698, 812, 1052, 1205
FaqI GGGAC 2 cut(s) 447, 728
FatI CATG 3 cut(s) 201, 810, 1203
FauI CCCGC 2 cut(s) 925, 1104
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 5 cut(s) 84, 361, 392, 647, 778
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 2 cut(s) 267, 381
Fsp4HI GCNGC 5 cut(s) 84, 361, 392, 647, 778
FspBI CTAG 2 cut(s) 470, 995
GlaI GCGC 1 cut(s) 955
GluI GCNGC 5 cut(s) 84, 361, 392, 647, 778
GsaI CCCAGC 2 cut(s) 715, 852
HaeIII GGCC 2 cut(s) 218, 320
HapII CCGG 5 cut(s) 231, 1059, 1268, 1319, 1333
HgaI GACGC 1 cut(s) 945
HhaI GCGC 1 cut(s) 956
Hin1II CATG 3 cut(s) 205, 814, 1207
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HincII GTYRAC 3 cut(s) 1151, 1174, 1222
HindII GTYRAC 3 cut(s) 1151, 1174, 1222
HindIII AAGCTT 1 cut(s) 670
HpaII CCGG 5 cut(s) 231, 1059, 1268, 1319, 1333
HphI GGTGA 6 cut(s) 448, 476, 964, 1207, 1249, 1333
Hpy166II GTNNAC 7 cut(s) 328, 972, 1000, 1151, 1174, 1222, 1309
Hpy188III TCNNGA 7 cut(s) 52, 367, 422, 463, 760, 1070, 1282
Hpy8I GTNNAC 7 cut(s) 328, 972, 1000, 1151, 1174, 1222, 1309
Hpy99I CGWCG 2 cut(s) 961, 1265
HpyAV CCTTC 4 cut(s) 562, 611, 805, 812
HpyCH4III ACNGT 4 cut(s) 655, 1219, 1261, 1291
HpyCH4IV ACGT 1 cut(s) 1170
HpyCH4V TGCA 3 cut(s) 117, 966, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 215, 257, 317, 777, 1117
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 1 cut(s) 1170
Hsp92II CATG 3 cut(s) 205, 814, 1207
HspAI GCGC 1 cut(s) 954
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 6 cut(s) 30, 175, 382, 453, 659, 687
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 4 cut(s) 31, 39, 270, 1022
Lsp1109I GCAGC 3 cut(s) 372, 658, 764
LweI GCATC 2 cut(s) 260, 1098
MaeI CTAG 2 cut(s) 470, 995
MaeII ACGT 1 cut(s) 1170
MaeIII GTNAC 2 cut(s) 397, 1213
MalI GATC 6 cut(s) 32, 177, 384, 455, 661, 689
MboI GATC 6 cut(s) 30, 175, 382, 453, 659, 687
MboII GAAGA 7 cut(s) 217, 382, 454, 539, 583, 1015, 1297
MflI RGATCY 2 cut(s) 175, 659
MhlI GDGCHC 3 cut(s) 267, 381, 1019
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 2 cut(s) 530, 1338
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 7 cut(s) 394, 482, 800, 837, 848, 1217, 1223
MmeI TCCRAC 3 cut(s) 126, 1015, 1257
Mox20I TGGCCA 1 cut(s) 218
MroXI GAANNNNTTC 2 cut(s) 238, 300
MscI TGGCCA 1 cut(s) 218
MseI TTAA 2 cut(s) 246, 1034
MslI CAYNNNNRTG 2 cut(s) 305, 1262
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 576
MspI CCGG 5 cut(s) 231, 1059, 1268, 1319, 1333
MspR9I CCNGG 3 cut(s) 317, 1269, 1304
Mva1269I GAATGC 2 cut(s) 785, 1136
MvaI CCWGG 2 cut(s) 317, 1304
MvnI CGCG 1 cut(s) 956
MwoI GCNNNNNNNGC 6 cut(s) 43, 215, 257, 317, 777, 1117
NciI CCSGG 1 cut(s) 1269
NdeII GATC 6 cut(s) 30, 175, 382, 453, 659, 687
NlaIII CATG 3 cut(s) 205, 814, 1207
NlaIV GGNNCC 3 cut(s) 27, 716, 1068
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 397, 1213
NspV TTCGAA 3 cut(s) 162, 555, 1086
OliI CACNNNNGTG 1 cut(s) 1262
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PctI GAATGC 2 cut(s) 785, 1136
PdmI GAANNNNTTC 2 cut(s) 238, 300
PfeI GAWTC 4 cut(s) 234, 418, 701, 1278
PkrI GCNGC 5 cut(s) 85, 362, 393, 648, 779
PleI GAGTC 7 cut(s) 394, 481, 799, 837, 848, 1216, 1223
PpsI GAGTC 7 cut(s) 394, 481, 799, 837, 848, 1216, 1223
PpuMI RGGWCCY 1 cut(s) 715
Psp124BI GAGCTC 2 cut(s) 267, 381
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 315, 1302
PspFI CCCAGC 2 cut(s) 711, 848
PspGI CCWGG 2 cut(s) 315, 1302
PspN4I GGNNCC 3 cut(s) 27, 716, 1068
PspPI GGNCC 2 cut(s) 578, 715
PspPPI RGGWCCY 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 1303
PsuI RGATCY 2 cut(s) 175, 659
RsaI GTAC 2 cut(s) 155, 986
RsaNI GTAC 2 cut(s) 154, 985
RseI CAYNNNNRTG 2 cut(s) 305, 1262
SacI GAGCTC 2 cut(s) 267, 381
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 246, 1034
SatI GCNGC 5 cut(s) 84, 361, 392, 647, 778
Sau3AI GATC 6 cut(s) 30, 175, 382, 453, 659, 687
Sau96I GGNCC 2 cut(s) 578, 715
SchI GAGTC 7 cut(s) 394, 482, 800, 837, 848, 1217, 1223
ScrFI CCNGG 3 cut(s) 317, 1269, 1304
SduI GDGCHC 3 cut(s) 267, 381, 1019
SfaNI GCATC 2 cut(s) 260, 1098
SfuI TTCGAA 3 cut(s) 162, 555, 1086
SinI GGWCC 2 cut(s) 578, 715
SmiMI CAYNNNNRTG 2 cut(s) 305, 1262
SpeI ACTAGT 1 cut(s) 994
Sse9I AATT 2 cut(s) 530, 1338
SspMI CTAG 2 cut(s) 470, 995
SstI GAGCTC 2 cut(s) 267, 381
StyD4I CCNGG 3 cut(s) 315, 1267, 1302
TaaI ACNGT 4 cut(s) 655, 1219, 1261, 1291
TaiI ACGT 1 cut(s) 1173
TaqII GACCGA 1 cut(s) 1136
TasI AATT 2 cut(s) 530, 1338
TauI GCSGC 2 cut(s) 86, 394
TfiI GAWTC 4 cut(s) 234, 418, 701, 1278
Tru1I TTAA 2 cut(s) 246, 1034
Tru9I TTAA 2 cut(s) 246, 1034
TscAI CASTG 1 cut(s) 1133
TseFI GTSAC 2 cut(s) 397, 1213
TseI GCWGC 3 cut(s) 360, 646, 777
Tsp45I GTSAC 2 cut(s) 397, 1213
TspDTI ATGAA 3 cut(s) 455, 727, 1192
TspGWI ACGGA 3 cut(s) 1068, 1201, 1237
TspRI CASTG 1 cut(s) 1133
VpaK11BI GGWCC 2 cut(s) 578, 715
XapI RAATTY 1 cut(s) 1338
XmnI GAANNNNTTC 2 cut(s) 238, 300
XspI CTAG 2 cut(s) 470, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.