Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

10235487 .. 10241978

Gene Structure 6492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1073400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAATGATGGAGGTCAATTGGATCTTGAATACGATTTCTACAACGAGACTTGCCCAGAAACTGAGACCATTGTGAGGTCGACGATGACGCAGATTACACCCACCAGAAGAATGTCTCTGCTCAGGTACTGCGCCTCTTCTTCCATGACTGCTTCATTCAGGTCCCATTCTTGGATATCCGAATATGCGCTCGAACTAACTCTCCGAGGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

72

Amino Acids

8.22

Weight (kDa)

5.19

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	75, 171
AgsI	TTSAA	1 cut(s)	29
AloI	GAACNNNNNNTCC	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	41, 59, 120
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	2 cut(s)	62, 129
AoxI	GGCC	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	134, 190
AspS9I	GGNCC	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	162
BccI	CCATC	1 cut(s)	2
BcoDI	GTCTC	3 cut(s)	41, 59, 120
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 171
BseDI	CCNNGG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	75, 171
BseMII	CTCAG	2 cut(s)	54, 136
BshFI	GGCC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	75, 171
BsmAI	GTCTC	3 cut(s)	41, 59, 120
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	55, 135
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	63, 122
BstHHI	GCGC	2 cut(s)	134, 190
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	41, 59, 120
BstMBI	GATC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	210
CaiI	CAGNNNCTG	2 cut(s)	62, 129
CfoI	GCGC	2 cut(s)	134, 190
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	1 cut(s)	210
CviKI_1	RGCY	1 cut(s)	210
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	63, 122
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	177
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 186
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
GlaI	GCGC	2 cut(s)	133, 189
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	134, 190
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	132, 188
HinP1I	GCGC	2 cut(s)	132, 188
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	181, 206
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	63, 122
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	132, 188
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	69, 109, 118, 145
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	120, 129, 132
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	4 cut(s)	5, 69, 145, 200
MspA1I	CMGCKG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	17
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PstNI	CAGNNNCTG	2 cut(s)	62, 129
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	162
SetI	ASST	4 cut(s)	16, 80, 128, 164
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	211
TaqI	TCGA	2 cut(s)	80, 192
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	17, 144
VpaK11BI	GGWCC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.