Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

12280277 .. 12282397

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGTTTTAACTATTAGACCTCAAATTCGAAGAATATTTACCAGTTCAGCCTTTGCTCGCCCAGAATGTAGAACCCTTCTGGCTCCCGAATCAAAAACAGAGCAACTAGAGCAGAAAACCCATCGCGCTAATCATGTAGATATGCTCGAACTCAACTCTCAACTGAAGCAGCTAGTCAAAATCGGTAATGTCAAAGACGCCCGGAAGATGTTCGATGAAATGCCAAAGAGAGATGAGGTTTCATGGACCAATATGATTTCAGGCTATGTTGGAGTCTCTGATTCCTCTGAAGCATTGGCTCTGTTCTCACACATGTGGGTGCAGCCAGGTCTCTGCATGGACCCTTTTCTTCTCAGCATTGCGCTCAAGGCTTGTGGACTTGGAAGGAACTTGTCTTATGGGGAAGTTGTACATGGGTACTCGGTGAAATCGGGTTTTGTGAACTCAGTCTTTGTGGGAAGTGCTCTTCTTGACATGTATATGAAGGTTGGTGAGATTGAGAAGGGTTGTAGAGTTTTCGACGCAATGCGGCTGAGAAATGTGGTGTCGTGGACTACCATTATCACTGGTCTCGTTCGCGCAGGTTATAATGTGGAGGGGTTGCGATATTTTGCTGAAATGTGGAGGTGTGGGGTGCAATGTGATGCATATGCGTTTGCTATCTCGTTGAAGGCGTGTGCTGATTTGGGTGCTTTGAAGTGTGGGAGAGAAATTCACACGCAAACGATGAAGAAAGGATTTGATGAGAACTCTTTCGTAGCCAACTCTCTTGCTACCATGTACAATAAATGTGGAAAATTGGACTATGGGGTGCAGTTGTTCGCGAATATGAGGACGCAGGATGTTGTTTCGTGGACATCAATCATTACATCATATTTTTGGACGGGTCAAGAGGACCATGCAATCAAAGCATTTATGCGAATGCAGGAATCTGGTGTGCATCCTAATGAATACACTTTTGCAGCTGTTATCTCCGGATGTGCCAATCTTGCTAGAGTTGAATGGGGTGAACAATTGCATGCCAACGTGTTACGCTTGGGTCTTGCGGATTCTTTGTCAGTGGGAAATTCAGTTATAACCATGTATGCTAAATGTGGGCGTTTGGCTTCAGCTTCTGTTGTGTTTCATGAGATGGGCAGAAAAGATATTGTTTCATGGACCACTGTAATTGCAGGGTATTCTCAAGCAGGTTATGGGGAAGAAGCTTTCAAGTATTTGTCGTGGATGAGAAGGGAAGAACCAAAACCAAACGAGTATGCTTTTGCGAGTGTATTAAGTGTTTGTGGAAGCATGGCAATGCTTGAGCAAGGCAAGCAATTGCATGCTCATGTCCTAACGGTAGGTCTAGATTCTGAAGCTATGGTACAAAGTGCCTTAGTCAATCTGTACTCGAAATGTGGAAGTATACAAGAGGCTGCAAAAATCTTTGATGTGACAAAAGCAAAAGATGATGATGTTATTTCATGGACGTCCATGATTAATGGATATGCTCAACATGGGTACTACCACGAAGCCATTGATCTGTTTGAGAAGCTTCCTACGGTTGGTCTGAAACCGGACTCAGTGACCTTCATTGGTGTTCTTGCTGCGTGTAGCCATGCTGGACTAGTTGATCTTGGTTTCCACTACTTCAATTCAATGAGCAATGAATTTAAGATTAGTCCTTCAAAAGAACACTACGGCTGCATGATTGATCTCCTTTGTCGAGCTGGATGGTTAAGTGAAGCAGAGCACATGATCAAAAGTATGCCAGTTCAACAGGATGATGTTGTCTGGTCTACTCTACTTACAGCATGTCGGCTCCATGGTGATGTTGACTGCGGAAGACGCGCTGCAGAGGAGATTCTTAAATTAAATCCTAATTGTGCAGTGACTCACATAACGCTAGCTGGTATTTATGCTGCCAAAGGAATGTGGAGGGAAGCCGCAGAGGTAAGGAGAATGATGAGATCAAAGGGCGTAATTAAGGAACCCGGATGGTCTGGGATAGAGGTCAAGAATGGGATTTCTGTGTTTGTTGCTGGAGATAGGTCTCATCCACAAGGTGATGAGATATATAGTGTGCTGGAATTACTAGATTCAAAGGCAGAGATTTCTACTCGGGAAACAGTTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

706

Amino Acids

78.38

Weight (kDa)

6.51

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	179 - 227	8.3e-08	PPR repeat family
PPR_2	PF13041	281 - 329	5.4e-12	PPR repeat family
PPR_3	PF13812	281 - 327	2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	381 - 428	2.4e-09	PPR repeat family
PPR_2	PF13041	485 - 532	3.5e-10	PPR repeat family
PPR	PF01535	487 - 513	1.9e-07	PPR repeat
E_motif	PF20431	602 - 664	1.2e-09	E motif
Eplus_motif	PF20430	672 - 690	6.1e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	588, 1076
AatII	GACGTC	1 cut(s)	1472
Acc36I	ACCTGC	2 cut(s)	572, 1178
AccI	GTMKAC	2 cut(s)	1405, 1778
AccII	CGCG	4 cut(s)	126, 579, 824, 1830
AccIII	TCCGGA	1 cut(s)	974
AciI	CCGC	4 cut(s)	529, 1046, 1821, 1926
AcsI	RAATTY	4 cut(s)	24, 711, 1066, 1649
AcuI	CTGAAG	4 cut(s)	185, 309, 1092, 1374
AcyI	GRCGYC	2 cut(s)	198, 1469
AdeI	CACNNNGTG	1 cut(s)	2045
AfaI	GTAC	6 cut(s)	411, 419, 782, 1365, 1388, 1502
AfiI	CCNNNNNNNGG	1 cut(s)	1544
AflIII	ACRYGT	3 cut(s)	312, 474, 1026
AgsI	TTSAA	9 cut(s)	670, 697, 1001, 1210, 1633, 1638, 1668, 1757, 2082
AhlI	ACTAGT	1 cut(s)	1606
AjnI	CCWGG	1 cut(s)	325
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	8 cut(s)	172, 965, 1112, 1205, 1358, 1534, 1709, 1889
AluI	AGCT	8 cut(s)	172, 965, 1112, 1205, 1358, 1534, 1709, 1889
Alw21I	GWGCWC	2 cut(s)	466, 1734
Alw26I	GTCTC	4 cut(s)	280, 335, 575, 2037
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	2100
Aor13HI	TCCGGA	1 cut(s)	974
ApeKI	GCWGC	8 cut(s)	169, 322, 962, 1415, 1586, 1683, 1832, 1901
ApoI	RAATTY	4 cut(s)	24, 711, 1066, 1649
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AseI	ATTAAT	1 cut(s)	1479
Asp700I	GAANNNNTTC	3 cut(s)	209, 752, 2109
AspLEI	GCGC	4 cut(s)	128, 364, 581, 1832
AspS9I	GGNCC	4 cut(s)	246, 340, 895, 1158
AsuC2I	CCSGG	2 cut(s)	202, 1974
AsuHPI	GGTGA	5 cut(s)	436, 503, 1019, 1820, 2057
AsuII	TTCGAA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	1885
AvaI	CYCGRG	1 cut(s)	2100
AvaII	GGWCC	4 cut(s)	246, 340, 895, 1158
BarI	GAAGNNNNNNTAC	4 cut(s)	22, 54, 1347, 1379
BbsI	GAAGAC	1 cut(s)	1831
Bbv12I	GWGCWC	2 cut(s)	466, 1734
BbvI	GCAGC	8 cut(s)	181, 334, 974, 1402, 1573, 1670, 1819, 1888
BccI	CCATC	4 cut(s)	129, 1126, 1707, 1971
BceAI	ACGGC	1 cut(s)	1696
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	1737
BcnI	CCSGG	2 cut(s)	202, 1974
BcoDI	GTCTC	4 cut(s)	280, 335, 575, 2037
BcuI	ACTAGT	1 cut(s)	1606
BfaI	CTAG	7 cut(s)	107, 173, 993, 1346, 1607, 1886, 2075
BfmI	CTRYAG	1 cut(s)	1833
BfuAI	ACCTGC	2 cut(s)	572, 1178
Bme1390I	CCNGG	3 cut(s)	202, 327, 1974
Bme18I	GGWCC	4 cut(s)	246, 340, 895, 1158
BmeT110I	CYCGRG	1 cut(s)	2100
BmgT120I	GGNCC	4 cut(s)	246, 340, 895, 1158
BmiI	GGNNCC	4 cut(s)	84, 342, 1802, 1971
BmrFI	CCNGG	3 cut(s)	202, 327, 1974
BmsI	GCATC	2 cut(s)	634, 949
BmtI	GCTAGC	1 cut(s)	1889
BpiI	GAAGAC	1 cut(s)	1831
BpmI	CTGGAG	1 cut(s)	2043
Bpu14I	TTCGAA	1 cut(s)	28
BpuEI	CTTGAG	3 cut(s)	350, 1167, 1322
BpuMI	CCSGG	2 cut(s)	202, 1974
BsaHI	GRCGYC	2 cut(s)	198, 1469
BsaI	GGTCTC	3 cut(s)	335, 575, 2037
BsaJI	CCNNGG	1 cut(s)	1804
BsaWI	WCCGGW	2 cut(s)	974, 1555
Bsc4I	CCNNNNNNNGG	1 cut(s)	1544
Bse1I	ACTGG	3 cut(s)	42, 571, 1751
Bse3DI	GCAATG	5 cut(s)	357, 531, 644, 1302, 1651
BseAI	TCCGGA	1 cut(s)	974
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	1804
BseGI	GGATG	8 cut(s)	847, 940, 983, 1230, 1718, 1768, 1982, 2035
BseLI	CCNNNNNNNGG	1 cut(s)	1544
BseMI	GCAATG	5 cut(s)	357, 531, 644, 1302, 1651
BseMII	CTCAG	4 cut(s)	367, 459, 524, 1575
BseNI	ACTGG	3 cut(s)	42, 571, 1751
BseRI	GAGGAG	1 cut(s)	1853
BseXI	GCAGC	8 cut(s)	181, 334, 974, 1402, 1573, 1670, 1819, 1888
BsgI	GTGCAG	3 cut(s)	341, 833, 1887
Bsh1236I	CGCG	4 cut(s)	126, 579, 824, 1830
BsiHKAI	GWGCWC	2 cut(s)	466, 1734
BsiHKCI	CYCGRG	1 cut(s)	2100
BsiSI	CCGG	4 cut(s)	202, 975, 1556, 1974
BslI	CCNNNNNNNGG	1 cut(s)	1544
BsmAI	GTCTC	4 cut(s)	280, 335, 575, 2037
BsmI	GAATGC	1 cut(s)	927
Bso31I	GGTCTC	3 cut(s)	335, 575, 2037
BsoBI	CYCGRG	1 cut(s)	2100
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	466, 1734
Bsp13I	TCCGGA	1 cut(s)	974
Bsp1407I	TGTACA	2 cut(s)	409, 780
Bsp143I	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
Bsp19I	CCATGG	1 cut(s)	1804
Bsp68I	TCGCGA	1 cut(s)	824
BspACI	CCGC	4 cut(s)	529, 1046, 1821, 1926
BspCNI	CTCAG	4 cut(s)	366, 458, 525, 1574
BspEI	TCCGGA	1 cut(s)	974
BspFNI	CGCG	4 cut(s)	126, 579, 824, 1830
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	4 cut(s)	84, 342, 1802, 1971
BspMAI	CTGCAG	1 cut(s)	1837
BspMI	ACCTGC	2 cut(s)	572, 1178
BspOI	GCTAGC	1 cut(s)	1889
BspQI	GCTCTTC	1 cut(s)	471
BspT104I	TTCGAA	1 cut(s)	28
BspTNI	GGTCTC	3 cut(s)	335, 575, 2037
BsrDI	GCAATG	5 cut(s)	357, 531, 644, 1302, 1651
BsrGI	TGTACA	2 cut(s)	409, 780
BsrI	ACTGG	3 cut(s)	42, 571, 1751
BssECI	CCNNGG	1 cut(s)	1804
BssMI	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
BssNAI	GTATAC	1 cut(s)	1406
BssNI	GRCGYC	2 cut(s)	198, 1469
BssT1I	CCWWGG	1 cut(s)	1804
Bst1107I	GTATAC	1 cut(s)	1406
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	1165, 1339, 1543, 2110
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	2 cut(s)	198, 1469
BstAUI	TGTACA	2 cut(s)	409, 780
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	5 cut(s)	58, 1020, 1313, 1323, 1887
BstDEI	CTNAG	5 cut(s)	353, 445, 533, 1375, 1561
BstDSI	CCRYGG	1 cut(s)	1804
BstF5I	GGATG	8 cut(s)	847, 940, 983, 1230, 1718, 1768, 1982, 2035
BstFNI	CGCG	4 cut(s)	126, 579, 824, 1830
BstHHI	GCGC	4 cut(s)	128, 364, 581, 1832
BstKTI	GATC	5 cut(s)	1522, 1615, 1696, 1740, 1952
BstMAI	GTCTC	4 cut(s)	280, 335, 575, 2037
BstMBI	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 368, 908, 989, 1312, 1827
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	5 cut(s)	316, 478, 1022, 1325, 1797
BstSCI	CCNGG	3 cut(s)	200, 325, 1972
BstSFI	CTRYAG	1 cut(s)	1833
BstUI	CGCG	4 cut(s)	126, 579, 824, 1830
BstV1I	GCAGC	8 cut(s)	181, 334, 974, 1402, 1573, 1670, 1819, 1888
BstV2I	GAAGAC	1 cut(s)	1831
BstZ17I	GTATAC	1 cut(s)	1406
BtgI	CCRYGG	1 cut(s)	1804
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	8 cut(s)	847, 940, 983, 1230, 1718, 1768, 1982, 2035
BtsI	GCAGTG	1 cut(s)	1875
BtsIMutI	CAGTG	5 cut(s)	564, 1065, 1161, 1569, 1875
BtuMI	TCGCGA	1 cut(s)	824
BveI	ACCTGC	2 cut(s)	572, 1178
Cac8I	GCNNGC	5 cut(s)	58, 1020, 1313, 1323, 1887
CaiI	CAGNNNCTG	1 cut(s)	1115
CciI	TCATGA	1 cut(s)	1126
CfoI	GCGC	4 cut(s)	128, 364, 581, 1832
Cfr13I	GGNCC	4 cut(s)	246, 340, 895, 1158
CseI	GACGC	4 cut(s)	206, 530, 844, 1836
Csp6I	GTAC	6 cut(s)	410, 418, 781, 1364, 1387, 1501
CspCI	CAANNNNNGTGG	6 cut(s)	355, 390, 772, 807, 1150, 1185
CviQI	GTAC	6 cut(s)	410, 418, 781, 1364, 1387, 1501
DdeI	CTNAG	5 cut(s)	353, 445, 533, 1375, 1561
DpnI	GATC	5 cut(s)	1521, 1614, 1695, 1739, 1951
DpnII	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
DraIII	CACNNNGTG	1 cut(s)	2045
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	1804
Eco31I	GGTCTC	3 cut(s)	335, 575, 2037
Eco47I	GGWCC	4 cut(s)	246, 340, 895, 1158
Eco57I	CTGAAG	4 cut(s)	185, 309, 1092, 1374
Eco88I	CYCGRG	1 cut(s)	2100
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	1804
EcoT22I	ATGCAT	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	1804
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	1 cut(s)	1737
FblI	GTMKAC	2 cut(s)	1405, 1778
FokI	GGATG	8 cut(s)	854, 927, 990, 1237, 1725, 1775, 1989, 2022
FspBI	CTAG	7 cut(s)	107, 173, 993, 1346, 1607, 1886, 2075
GlaI	GCGC	4 cut(s)	127, 363, 580, 1831
GsuI	CTGGAG	1 cut(s)	2043
HapII	CCGG	4 cut(s)	202, 975, 1556, 1974
HgaI	GACGC	4 cut(s)	206, 530, 844, 1836
HhaI	GCGC	4 cut(s)	128, 364, 581, 1832
Hin1I	GRCGYC	2 cut(s)	198, 1469
Hin6I	GCGC	4 cut(s)	126, 362, 579, 1830
HinP1I	GCGC	4 cut(s)	126, 362, 579, 1830
HincII	GTYRAC	1 cut(s)	1816
HindII	GTYRAC	1 cut(s)	1816
HindIII	AAGCTT	2 cut(s)	1203, 1532
HpaII	CCGG	4 cut(s)	202, 975, 1556, 1974
HphI	GGTGA	5 cut(s)	436, 503, 1019, 1820, 2057
Hpy166II	GTNNAC	8 cut(s)	377, 442, 552, 855, 1010, 1406, 1779, 1816
Hpy188I	TCNGA	4 cut(s)	280, 289, 1354, 1551
Hpy188III	TCNNGA	9 cut(s)	86, 470, 823, 890, 975, 1127, 1346, 1996, 2102
Hpy8I	GTNNAC	8 cut(s)	377, 442, 552, 855, 1010, 1406, 1779, 1816
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	8 cut(s)	86, 378, 478, 496, 664, 1224, 1579, 1674
HpyCH4III	ACNGT	4 cut(s)	1165, 1339, 1543, 2110
HpyCH4IV	ACGT	2 cut(s)	1026, 1469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 368, 908, 989, 1312, 1827
HpyF3I	CTNAG	5 cut(s)	353, 445, 533, 1375, 1561
HpySE526I	ACGT	2 cut(s)	1026, 1469
Hsp92I	GRCGYC	2 cut(s)	198, 1469
HspAI	GCGC	4 cut(s)	126, 362, 579, 1830
Kpn2I	TCCGGA	1 cut(s)	974
Ksp22I	TGATCA	1 cut(s)	1737
Kzo9I	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	88, 1806
Lsp1109I	GCAGC	8 cut(s)	181, 334, 974, 1402, 1573, 1670, 1819, 1888
LweI	GCATC	2 cut(s)	634, 949
MaeI	CTAG	7 cut(s)	107, 173, 993, 1346, 1607, 1886, 2075
MaeII	ACGT	2 cut(s)	1026, 1469
MaeIII	GTNAC	4 cut(s)	1029, 1432, 1564, 1870
MalI	GATC	5 cut(s)	1521, 1614, 1695, 1739, 1951
MboI	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
MboII	GAAGA	9 cut(s)	42, 217, 341, 458, 742, 1211, 1247, 1836, 2105
MfeI	CAATTG	2 cut(s)	1013, 1316
MhlI	GDGCHC	2 cut(s)	466, 1734
MlyI	GAGTC	3 cut(s)	282, 1553, 1867
MmeI	TCCRAC	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	649
MroI	TCCGGA	1 cut(s)	974
MroXI	GAANNNNTTC	3 cut(s)	209, 752, 2109
MseI	TTAA	8 cut(s)	8, 1274, 1479, 1653, 1718, 1848, 1853, 1965
MslI	CAYNNNNRTG	7 cut(s)	313, 317, 479, 945, 1295, 1326, 1809
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	4 cut(s)	202, 975, 1556, 1974
MspR9I	CCNGG	3 cut(s)	202, 327, 1974
MunI	CAATTG	2 cut(s)	1013, 1316
Mva1269I	GAATGC	1 cut(s)	927
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	4 cut(s)	126, 579, 824, 1830
MwoI	GCNNNNNNNGC	6 cut(s)	109, 368, 908, 989, 1312, 1827
NciI	CCSGG	2 cut(s)	202, 1974
NcoI	CCATGG	1 cut(s)	1804
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
NheI	GCTAGC	1 cut(s)	1885
NlaIV	GGNNCC	4 cut(s)	84, 342, 1802, 1971
NmuCI	GTSAC	3 cut(s)	1432, 1564, 1870
NruI	TCGCGA	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	5 cut(s)	316, 478, 1022, 1325, 1797
NspV	TTCGAA	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	313
PaeI	GCATGC	2 cut(s)	1022, 1325
PagI	TCATGA	1 cut(s)	1126
PciI	ACATGT	2 cut(s)	312, 474
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PctI	GAATGC	1 cut(s)	927
PdmI	GAANNNNTTC	3 cut(s)	209, 752, 2109
PfeI	GAWTC	7 cut(s)	89, 281, 929, 1049, 1349, 1843, 2078
PleI	GAGTC	3 cut(s)	281, 1553, 1867
PpsI	GAGTC	3 cut(s)	281, 1553, 1867
PscI	ACATGT	2 cut(s)	312, 474
PshBI	ATTAAT	1 cut(s)	1479
PsiI	TTATAA	2 cut(s)	588, 1076
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	4 cut(s)	84, 342, 1802, 1971
PspPI	GGNCC	4 cut(s)	246, 340, 895, 1158
PstI	CTGCAG	1 cut(s)	1837
PstNI	CAGNNNCTG	1 cut(s)	1115
PvuII	CAGCTG	1 cut(s)	965
RruI	TCGCGA	1 cut(s)	824
RsaI	GTAC	6 cut(s)	411, 419, 782, 1365, 1388, 1502
RsaNI	GTAC	6 cut(s)	410, 418, 781, 1364, 1387, 1501
RseI	CAYNNNNRTG	7 cut(s)	313, 317, 479, 945, 1295, 1326, 1809
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	8 cut(s)	8, 1274, 1479, 1653, 1718, 1848, 1853, 1965
Sau3AI	GATC	5 cut(s)	1519, 1612, 1693, 1737, 1949
Sau96I	GGNCC	4 cut(s)	246, 340, 895, 1158
SchI	GAGTC	3 cut(s)	282, 1553, 1867
ScrFI	CCNGG	3 cut(s)	202, 327, 1974
SduI	GDGCHC	2 cut(s)	466, 1734
SfaNI	GCATC	2 cut(s)	634, 949
SfcI	CTRYAG	1 cut(s)	1833
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	4 cut(s)	246, 340, 895, 1158
SmiMI	CAYNNNNRTG	7 cut(s)	313, 317, 479, 945, 1295, 1326, 1809
SmlI	CTYRAG	3 cut(s)	365, 1182, 1301
SmoI	CTYRAG	3 cut(s)	365, 1182, 1301
SpeI	ACTAGT	1 cut(s)	1606
SphI	GCATGC	2 cut(s)	1022, 1325
SsiI	CCGC	4 cut(s)	529, 1046, 1821, 1926
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	7 cut(s)	107, 173, 993, 1346, 1607, 1886, 2075
StyD4I	CCNGG	3 cut(s)	200, 325, 1972
StyI	CCWWGG	1 cut(s)	1804
TaaI	ACNGT	4 cut(s)	1165, 1339, 1543, 2110
TaiI	ACGT	2 cut(s)	1029, 1472
TaqI	TCGA	6 cut(s)	28, 147, 213, 519, 1391, 1705
TatI	WGTACW	3 cut(s)	409, 780, 1386
TauI	GCSGC	2 cut(s)	532, 1928
TfiI	GAWTC	7 cut(s)	89, 281, 929, 1049, 1349, 1843, 2078
Tru1I	TTAA	8 cut(s)	8, 1274, 1479, 1653, 1718, 1848, 1853, 1965
Tru9I	TTAA	8 cut(s)	8, 1274, 1479, 1653, 1718, 1848, 1853, 1965
TscAI	CASTG	5 cut(s)	571, 1065, 1168, 1569, 1875
TseFI	GTSAC	3 cut(s)	1432, 1564, 1870
TseI	GCWGC	8 cut(s)	169, 322, 962, 1415, 1586, 1683, 1832, 1901
Tsp45I	GTSAC	3 cut(s)	1432, 1564, 1870
TspRI	CASTG	5 cut(s)	571, 1065, 1168, 1569, 1875
VpaK11BI	GGWCC	4 cut(s)	246, 340, 895, 1158
VspI	ATTAAT	1 cut(s)	1479
XapI	RAATTY	4 cut(s)	24, 711, 1066, 1649
XbaI	TCTAGA	1 cut(s)	1345
XceI	RCATGY	5 cut(s)	316, 478, 1022, 1325, 1797
XmiI	GTMKAC	2 cut(s)	1405, 1778
XmnI	GAANNNNTTC	3 cut(s)	209, 752, 2109
XspI	CTAG	7 cut(s)	107, 173, 993, 1346, 1607, 1886, 2075
ZraI	GACGTC	1 cut(s)	1470
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.