Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

19597181 .. 19598661

Gene Structure 1481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACAAGTTTGGATATTGTAATTTCTATCCAGCTATTTATCTGTCATTCTTAATGTTGTGGGGCTTCTTGAATCAGGGGTGTGATGCATCCGTTCTCTTGGATGACAGCAATGGGGATAAAAACCATTCTATAGAGAACCAGGCTACACCAAATAGGTCCTTGAAGGGATTCGATAAAATTGATCAGATCAAGGTGGAGCTCGAAAATGTTTGTCCAGCGGTGGTATCTTGTGCCGATGTACTTGCTCTTGCCGCCAGAGATGGCATTATTCTGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

94

Amino Acids

10.35

Weight (kDa)

4.61

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	25 - 91	1.4e-19	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 255
AfaI	GTAC	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	73, 166
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	35, 202
AluI	AGCT	2 cut(s)	35, 202
Alw21I	GWGCWC	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	76, 98
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	89, 109
BseMI	GCAATG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	184, 189
BspACI	CCGC	2 cut(s)	221, 255
BsrDI	GCAATG	1 cut(s)	118
BssMI	GATC	2 cut(s)	184, 189
Bst2UI	CCWGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	89, 109
BstKTI	GATC	2 cut(s)	187, 192
BstMBI	GATC	2 cut(s)	184, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	89, 109
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	242
CviJI	RGCY	4 cut(s)	35, 66, 146, 202
CviKI_1	RGCY	4 cut(s)	35, 66, 146, 202
CviQI	GTAC	1 cut(s)	242
DpnI	GATC	2 cut(s)	186, 191
DpnII	GATC	2 cut(s)	184, 189
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	204
FaiI	YATR	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	76, 116
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	73, 171
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 189
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	45, 62, 128, 155, 231, 260, 271
LweI	GCATC	2 cut(s)	76, 98
MalI	GATC	2 cut(s)	186, 191
MboI	GATC	2 cut(s)	184, 189
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	22, 180
Mph1103I	ATGCAT	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	53, 283
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	184, 189
NsiI	ATGCAT	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	73, 171
PkrI	GCNGC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	53, 283
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	184, 189
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	4 cut(s)	37, 161, 198, 204
SfaNI	GCATC	2 cut(s)	76, 98
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	22, 180
SsiI	CCGC	2 cut(s)	221, 255
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	141
TaqI	TCGA	2 cut(s)	174, 204
TasI	AATT	2 cut(s)	22, 180
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	73, 171
Tru1I	TTAA	2 cut(s)	53, 283
Tru9I	TTAA	2 cut(s)	53, 283
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.