RchiOBHm_Chr7g0193561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001171
Physical Location & Seq
Reverse (-)
11850232 .. 11851777
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17309

Sequence Viewer

Length: 225 bp
ATGGTGTTAATTGAACCACGAGAGTTCTATTTTGAGGTCGAAGACGGCTTGGATCAGAGGAATGTCTCGGCTCAGTTGCTGCGTCTCTTTTTCCATGACTCCTTCATTGAGAGAATTGGAGCTCAGCTAGCAGCTAGCTTTTGCAGTGGGATTGGCTCTGGGAAAGAAAAGAGAAGGACAAAGGGTACGAATTTGCAGGTGATGAAGATTCAAGACCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.48

Weight (kDa)

5.76

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 1 cut(s) 187
AgsI TTSAA 2 cut(s) 14, 212
AluBI AGCT 4 cut(s) 122, 127, 134, 138
AluI AGCT 4 cut(s) 122, 127, 134, 138
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 70, 89
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 79, 131
ApoI RAATTY 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 211
AsuNHI GCTAGC 2 cut(s) 127, 134
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 66, 143
BceAI ACGGC 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 70, 89
BfaI CTAG 2 cut(s) 128, 135
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 2 cut(s) 80, 132
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 2 cut(s) 81, 133
BmtI GCTAGC 2 cut(s) 131, 138
BpiI GAAGAC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 123
BseMII CTCAG 2 cut(s) 86, 137
BseXI GCAGC 2 cut(s) 66, 143
BsiHKAI GWGCWC 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 70, 89
BsmBI CGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 52
Bsp1720I GCTNAGC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 85, 136
BspMI ACCTGC 1 cut(s) 187
BspOI GCTAGC 2 cut(s) 131, 138
BspPI GGATC 1 cut(s) 60
BssMI GATC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 129, 136
BstDEI CTNAG 2 cut(s) 72, 123
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 70, 89
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 66, 143
BstV2I GAAGAC 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 129, 136
CaiI CAGNNNCTG 1 cut(s) 79
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 95
CviJI RGCY 7 cut(s) 48, 71, 122, 127, 134, 138, 156
CviKI_1 RGCY 7 cut(s) 48, 71, 122, 127, 134, 138, 156
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 72, 123
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 98
FaiI YATR 1 cut(s) 96
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 80, 132
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 80, 132
FspBI CTAG 2 cut(s) 128, 135
GluI GCNGC 2 cut(s) 80, 132
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 98
HinfI GANTC 2 cut(s) 98, 208
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 112, 168
HpyCH4V TGCA 2 cut(s) 144, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 72, 123
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 144, 182
Lsp1109I GCAGC 2 cut(s) 66, 143
MaeI CTAG 2 cut(s) 128, 135
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 53, 217
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 9, 114, 190
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 28, 51
MseI TTAA 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 52
NheI GCTAGC 2 cut(s) 127, 134
NlaIII CATG 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 81, 133
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 80, 132
Sau3AI GATC 1 cut(s) 52
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 39, 124, 129, 136, 140, 201
SgeI CNNG 9 cut(s) 30, 32, 61, 79, 107, 140, 147, 171, 209
Sse9I AATT 3 cut(s) 9, 114, 190
SspMI CTAG 2 cut(s) 128, 135
SstI GAGCTC 1 cut(s) 124
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 9, 114, 190
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 151
TseI GCWGC 2 cut(s) 79, 131
TspDTI ATGAA 2 cut(s) 94, 218
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 190
XspI CTAG 2 cut(s) 128, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.