Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040363.1

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

649 .. 1330

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040363.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggtggggattccaaggccagatgacaacatcaatcagacattgcatcagttctcgctgagaggttttgatgagagagaaacagttgctcttctaggagggcacaacattggaaagataggatgtgagttcattatgtcacgcatcaacaacttcaagggcacagggcagccagacccaactattcctcctgaatttctcagggagatgaaactgaattgcgaagatgataataatgagtcaactagtattgctgctgctgcatctcctttggtatcaaggggactgagtgagaggtttaccacagatgggatgtcatactatcaacaactgtcttcatcggtatcatcaggggctggttttgacagtcactattaccagagcttgttgaggggaagaggactcctctttgctgatcagcaattaatggctaataaaaggactgctcgattggtcgcagcatatgcttcagatgatggatcagcctttcaaatggactttgcccgggcaatgatgaagatgtcagatcttaatgttctcactggatcccaaggtcaagtccgttttgactgttctctccccacccacagttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

198

Amino Acids

21.73

Weight (kDa)

5.53

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	487, 540, 553
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	157, 491
AhlI	ACTAGT	1 cut(s)	245
AluBI	AGCT	1 cut(s)	384
AluI	AGCT	1 cut(s)	384
AlwI	GGATC	3 cut(s)	487, 540, 553
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	5 cut(s)	169, 254, 257, 260, 458
ApoI	RAATTY	1 cut(s)	194
AseI	ATTAAT	1 cut(s)	425
AsuC2I	CCSGG	2 cut(s)	505, 506
AvaI	CYCGRG	1 cut(s)	504
BaeGI	GKGCMC	2 cut(s)	105, 164
BamHI	GGATCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	5 cut(s)	181, 241, 244, 247, 470
BccI	CCATC	2 cut(s)	302, 470
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	505, 506
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	95, 246
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	5 cut(s)	170, 255, 258, 261, 459
BlsI	GCNGC	5 cut(s)	171, 256, 259, 262, 460
Bme1390I	CCNGG	2 cut(s)	505, 506
BmeT110I	CYCGRG	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	2 cut(s)	505, 506
BmsI	GCATC	3 cut(s)	55, 153, 272
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpuMI	CCSGG	2 cut(s)	505, 506
BsaJI	CCNNGG	3 cut(s)	14, 504, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	41, 516
BseDI	CCNNGG	3 cut(s)	14, 504, 550
BseGI	GGATG	2 cut(s)	128, 318
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	2 cut(s)	41, 516
BseMII	CTCAG	3 cut(s)	50, 214, 278
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	2 cut(s)	105, 164
BseXI	GCAGC	5 cut(s)	181, 241, 244, 247, 470
BshFI	GGCC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	105, 164
Bsp143I	GATC	4 cut(s)	415, 479, 526, 545
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	3 cut(s)	51, 213, 279
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	3 cut(s)	487, 540, 553
BspQI	GCTCTTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	41, 516
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	14, 504, 550
BssMI	GATC	4 cut(s)	415, 479, 526, 545
BssT1I	CCWWGG	2 cut(s)	14, 550
Bst4CI	ACNGT	5 cut(s)	85, 333, 368, 572, 590
Bst6I	CTCTTC	2 cut(s)	96, 391
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	59, 200, 287
BstF5I	GGATG	2 cut(s)	128, 318
BstKTI	GATC	4 cut(s)	418, 482, 529, 548
BstMBI	GATC	4 cut(s)	415, 479, 526, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 464
BstSCI	CCNGG	2 cut(s)	503, 504
BstSLI	GKGCMC	2 cut(s)	105, 164
BstV1I	GCAGC	5 cut(s)	181, 241, 244, 247, 470
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	2 cut(s)	526, 545
BstYI	RGATCY	2 cut(s)	526, 545
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	128, 318
BtsIMutI	CAGTG	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr9I	CCCGGG	1 cut(s)	504
CviJI	RGCY	6 cut(s)	19, 172, 356, 384, 431, 485
CviKI_1	RGCY	6 cut(s)	19, 172, 356, 384, 431, 485
DdeI	CTNAG	3 cut(s)	59, 200, 287
DpnI	GATC	4 cut(s)	417, 481, 528, 547
DpnII	GATC	4 cut(s)	415, 479, 526, 545
Eam1104I	CTCTTC	2 cut(s)	96, 391
EarI	CTCTTC	2 cut(s)	96, 391
Eco130I	CCWWGG	2 cut(s)	14, 550
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	504
EcoT14I	CCWWGG	2 cut(s)	14, 550
ErhI	CCWWGG	2 cut(s)	14, 550
FaiI	YATR	4 cut(s)	137, 319, 463, 465
FaqI	GGGAC	1 cut(s)	297
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	170, 255, 258, 261, 459
FokI	GGATG	2 cut(s)	135, 325
Fsp4HI	GCNGC	5 cut(s)	170, 255, 258, 261, 459
FspBI	CTAG	2 cut(s)	95, 246
GluI	GCNGC	5 cut(s)	170, 255, 258, 261, 459
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	10, 239, 402
HpaII	CCGG	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	243, 300
Hpy188I	TCNGA	3 cut(s)	39, 472, 526
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	243, 300
HpyCH4III	ACNGT	5 cut(s)	85, 333, 368, 572, 590
HpyCH4V	TGCA	2 cut(s)	46, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 464
HpyF3I	CTNAG	3 cut(s)	59, 200, 287
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	415, 479, 526, 545
LguI	GCTCTTC	1 cut(s)	96
Lsp1109I	GCAGC	5 cut(s)	181, 241, 244, 247, 470
LweI	GCATC	3 cut(s)	55, 153, 272
MaeI	CTAG	2 cut(s)	95, 246
MaeIII	GTNAC	2 cut(s)	138, 368
MalI	GATC	4 cut(s)	417, 481, 528, 547
MboI	GATC	4 cut(s)	415, 479, 526, 545
MboII	GAAGA	5 cut(s)	83, 236, 327, 408, 529
MflI	RGATCY	2 cut(s)	526, 545
MhlI	GDGCHC	2 cut(s)	105, 164
MluCI	AATT	3 cut(s)	194, 217, 422
MlyI	GAGTC	2 cut(s)	248, 396
MnlI	CCTC	7 cut(s)	56, 92, 198, 288, 384, 392, 416
MseI	TTAA	2 cut(s)	425, 531
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	505, 506
MwoI	GCNNNNNNNGC	2 cut(s)	260, 464
NciI	CCSGG	2 cut(s)	505, 506
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	415, 479, 526, 545
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	2 cut(s)	138, 368
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	5 cut(s)	171, 256, 259, 262, 460
PleI	GAGTC	2 cut(s)	247, 396
PpsI	GAGTC	2 cut(s)	247, 396
PshBI	ATTAAT	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	526, 545
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	425, 531
SatI	GCNGC	5 cut(s)	170, 255, 258, 261, 459
Sau3AI	GATC	4 cut(s)	415, 479, 526, 545
SchI	GAGTC	2 cut(s)	248, 396
ScrFI	CCNGG	2 cut(s)	505, 506
SduI	GDGCHC	2 cut(s)	105, 164
SetI	ASST	4 cut(s)	67, 299, 386, 556
SfaNI	GCATC	3 cut(s)	55, 153, 272
SmaI	CCCGGG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	245
SrfI	GCCCGGGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	194, 217, 422
SspMI	CTAG	2 cut(s)	95, 246
StyD4I	CCNGG	2 cut(s)	503, 504
StyI	CCWWGG	2 cut(s)	14, 550
TaaI	ACNGT	5 cut(s)	85, 333, 368, 572, 590
TaqI	TCGA	1 cut(s)	448
TasI	AATT	3 cut(s)	194, 217, 422
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	425, 531
Tru9I	TTAA	2 cut(s)	425, 531
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	138, 368
TseI	GCWGC	5 cut(s)	169, 254, 257, 260, 458
Tsp45I	GTSAC	2 cut(s)	138, 368
TspDTI	ATGAA	4 cut(s)	121, 224, 327, 530
TspGWI	ACGGA	1 cut(s)	551
TspMI	CCCGGG	1 cut(s)	504
TspRI	CASTG	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	504
XspI	CTAG	2 cut(s)	95, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.