Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

5691130 .. 5700538

Gene Structure 9409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG035000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAATACCTTGTTACAACATCTAAGAACCCGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCAGGAAACTGTTGGGACCAGGGTTTTGATGCTAATACCAGGAGGACAAATTGAACTTCTTGTTGCCAAACAAGAAGCAGATCCTGAGGATTTAAGAGAAGGTCAGAAACGGATGATGGCATTGTTCCATGTGAAAATATTCTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

71

Amino Acids

8.16

Weight (kDa)

6.55

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	3 cut(s)	66, 83, 103
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbsI	GAAGAC	1 cut(s)	37
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	3 cut(s)	68, 85, 105
BfaI	CTAG	2 cut(s)	60, 214
Bme1390I	CCNGG	3 cut(s)	68, 85, 105
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	68, 85, 105
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	68, 85, 105
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	33, 145
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	33, 145
Bst2UI	CCWGG	3 cut(s)	68, 85, 105
Bst4CI	ACNGT	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	24, 150
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	36, 148
BstMBI	GATC	2 cut(s)	33, 145
BstNI	CCWGG	3 cut(s)	68, 85, 105
BstSCI	CCNGG	3 cut(s)	66, 83, 103
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	81
CviAII	CATG	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	24, 150
DpnI	GATC	2 cut(s)	35, 147
DpnII	GATC	2 cut(s)	33, 145
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	150
EcoRII	CCWGG	3 cut(s)	66, 83, 103
FaeI	CATG	1 cut(s)	197
FaiI	YATR	2 cut(s)	42, 195
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	193
FokI	GGATG	1 cut(s)	190
FspBI	CTAG	2 cut(s)	60, 214
GsuI	CTGGAG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	24, 150
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	33, 145
LpnPI	CCDG	7 cut(s)	53, 70, 80, 90, 97, 117, 162
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	60, 214
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	35, 147
MboI	GATC	2 cut(s)	33, 145
MboII	GAAGA	2 cut(s)	37, 40
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	101, 145
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	68, 85, 105
MvaI	CCWGG	3 cut(s)	68, 85, 105
NdeII	GATC	2 cut(s)	33, 145
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	66
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	66, 83, 103
PspGI	CCWGG	3 cut(s)	66, 83, 103
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	33, 145
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	68, 85, 105
SetI	ASST	2 cut(s)	12, 169
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	1 cut(s)	114
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	2 cut(s)	60, 214
StyD4I	CCNGG	3 cut(s)	66, 83, 103
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	60, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.