Rmu_sc0002137.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002137.1
OG0001171
Physical Location & Seq
Reverse (-)
16859 .. 19009
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002137.1_g000005.1.cds

Sequence Viewer

Length: 1170 bp
atgttgggcacagtgaaggcgcgttgggtgttcgcgacggtggtgtttttctcgttggtggtttcgcggagcaaaccgagagttgagtcggagagagagaagccttttctctcttcttcttcttcgccggcgtccgaagagccactggtcactctggtctctatggcttctagcgaaggaggccaagaagagttcttcaccgaaacgacgacggatgaggggtcgcggaatctggagtacgatttctatcggaactcgtgccctcaggcagagaccattgtgaggtcgaagatggcttggatttacggccagcacaggaacgtctcggcccagttgctgcgtctctttttccatgactgcttcattgaggggtgtgatgcttccgttctcttggatgacagcaatggggataaaaaccgttctatagagaagcaggctacaccaaataggtccttgaagggatttgataaaattgatcagatcaaggaggagctggaaaatgtttgtccaggggtggtatcttgtgccgatatacttgttcttgccgccagagatggcattatcctggctggtggcccatactatccagttttgacaggtagaagagatagtacccagtcctactttgatgtggcattggaggagattccaaaacctgatgacaatatcactcatatattgcatctgttctcaagtagaggtttcagtgagagagaaacagttgctcttcttggagcgcacaacattggaaagataggatgtgagttcatacagtcacgcgtaaacaacttcactgggacagggcaaccagacccagccttacctcctgatctcctcactacgatgaaactaaaatgccaagacaatgctaacagggcgaccagtaatactgatgcatctcaatcgtctttgtccatatcatctggggcagtttttgattctcactattaccagaacttgttgcggggaagaggaatcctctttgctgatcagcagttaatggctaataggatgacagctcaagtggtcgcagcatttgcttcagataatggatcggcatttcgaatggactttgcccaggcaatgacgaagatgtcaacacttggtgtcctcactggatctcaaggtcaggtgcgatcggtctgttctctcccagtcaatagttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

389

Amino Acids

42.7

Weight (kDa)

5.39

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1093
AccII CGCG 5 cut(s) 22, 35, 67, 226, 780
AciI CCGC 4 cut(s) 67, 226, 546, 964
AclWI GGATC 2 cut(s) 1060, 1126
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 1026
AcyI GRCGYC 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 1106
AfaI GTAC 2 cut(s) 239, 613
AfiI CCNNNNNNNGG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 1 cut(s) 457
AjnI CCWGG 3 cut(s) 508, 564, 1077
AluBI AGCT 2 cut(s) 493, 1019
AluI AGCT 2 cut(s) 493, 1019
Alw26I GTCTC 4 cut(s) 163, 266, 328, 347
AlwI GGATC 2 cut(s) 1060, 1126
AlwNI CAGNNNCTG 1 cut(s) 337
AoxI GGCC 4 cut(s) 181, 307, 327, 574
ApeKI GCWGC 2 cut(s) 337, 1031
AspLEI GCGC 2 cut(s) 22, 739
AspS9I GGNCC 3 cut(s) 328, 450, 575
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 1063
AvaII GGWCC 1 cut(s) 450
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 2 cut(s) 11, 263
BarI GAAGNNNNNNTAC 2 cut(s) 595, 627
BauI CACGAG 1 cut(s) 256
BbvI GCAGC 2 cut(s) 324, 1043
BccI CCATC 2 cut(s) 286, 548
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 3 cut(s) 510, 566, 1079
BclI TGATCA 2 cut(s) 475, 988
BcoDI GTCTC 4 cut(s) 163, 266, 328, 347
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 3 cut(s) 338, 546, 1032
BlsI GCNGC 3 cut(s) 339, 547, 1033
Bme1390I CCNGG 3 cut(s) 510, 566, 1079
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 328, 450, 575
BmrFI CCNGG 3 cut(s) 510, 566, 1079
BmrI ACTGGG 4 cut(s) 325, 610, 804, 1148
BmsI GCATC 4 cut(s) 367, 691, 883, 905
BmuI ACTGGG 4 cut(s) 325, 610, 804, 1148
BplI GAGNNNNNCTC 2 cut(s) 963, 995
BpmI CTGGAG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 1063
BpuEI CTTGAG 3 cut(s) 676, 1005, 1107
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 131
BsaI GGTCTC 2 cut(s) 163, 266
BsaJI CCNNGG 2 cut(s) 509, 1077
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 8 cut(s) 150, 331, 587, 616, 799, 882, 1120, 1154
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 409, 1089
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 3 cut(s) 510, 566, 1079
BseDI CCNNGG 2 cut(s) 509, 1077
BseGI GGATG 4 cut(s) 220, 400, 764, 1017
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 2 cut(s) 409, 1089
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 8 cut(s) 150, 331, 587, 616, 799, 882, 1120, 1154
BseRI GAGGAG 3 cut(s) 503, 656, 824
BseSI GKGCMC 2 cut(s) 11, 263
BseXI GCAGC 2 cut(s) 324, 1043
BseYI CCCAGC 1 cut(s) 814
Bsh1236I CGCG 5 cut(s) 22, 35, 67, 226, 780
Bsh1285I CGRYCG 1 cut(s) 1139
BshFI GGCC 4 cut(s) 183, 309, 329, 576
BsiEI CGRYCG 1 cut(s) 1139
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 4 cut(s) 163, 266, 328, 347
BsmBI CGTCTC 2 cut(s) 328, 347
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 4 cut(s) 183, 309, 329, 576
Bso31I GGTCTC 2 cut(s) 163, 266
Bsp119I TTCGAA 1 cut(s) 1063
Bsp1286I GDGCHC 2 cut(s) 11, 263
Bsp143I GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 4 cut(s) 67, 226, 546, 964
BspANI GGCC 4 cut(s) 183, 309, 329, 576
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 5 cut(s) 22, 35, 67, 226, 780
BspPI GGATC 2 cut(s) 1060, 1126
BspQI GCTCTTC 2 cut(s) 132, 732
BspT104I TTCGAA 1 cut(s) 1063
BspTNI GGTCTC 2 cut(s) 163, 266
BsrDI GCAATG 2 cut(s) 409, 1089
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 8 cut(s) 150, 331, 587, 616, 799, 882, 1120, 1154
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 509, 1077
BssMI GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
BssNI GRCGYC 1 cut(s) 131
BssSI CACGAG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 3 cut(s) 510, 566, 1079
Bst4CI ACNGT 5 cut(s) 13, 40, 419, 721, 774
Bst6I CTCTTC 6 cut(s) 118, 132, 183, 598, 732, 964
BstACI GRCGYC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 1063
BstC8I GCNNGC 3 cut(s) 129, 311, 435
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 220, 400, 764, 1017
BstFNI CGCG 5 cut(s) 22, 35, 67, 226, 780
BstHHI GCGC 2 cut(s) 22, 739
BstKTI GATC 7 cut(s) 478, 483, 832, 991, 1055, 1121, 1139
BstMAI GTCTC 4 cut(s) 163, 266, 328, 347
BstMBI GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
BstMCI CGRYCG 1 cut(s) 1139
BstMWI GCNNNNNNNGC 3 cut(s) 180, 875, 1037
BstNI CCWGG 3 cut(s) 510, 566, 1079
BstSCI CCNGG 3 cut(s) 508, 564, 1077
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 2 cut(s) 11, 263
BstUI CGCG 5 cut(s) 22, 35, 67, 226, 780
BstV1I GCAGC 2 cut(s) 324, 1043
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 4 cut(s) 183, 309, 329, 576
BtsCI GGATG 4 cut(s) 220, 400, 764, 1017
BtsIMutI CAGTG 5 cut(s) 18, 143, 712, 792, 1113
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 129, 311, 435
CaiI CAGNNNCTG 1 cut(s) 337
CfoI GCGC 2 cut(s) 22, 739
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 328, 450, 575
CseI GACGC 2 cut(s) 120, 329
Csp6I GTAC 2 cut(s) 238, 612
CviAII CATG 1 cut(s) 353
CviQI GTAC 2 cut(s) 238, 612
DdeI CTNAG 1 cut(s) 264
DpnI GATC 7 cut(s) 477, 482, 831, 990, 1054, 1120, 1138
DpnII GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
DraIII CACNNNGTG 1 cut(s) 1106
DrdI GACNNNNNNGTC 1 cut(s) 1093
DseDI GACNNNNNNGTC 1 cut(s) 1093
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 6 cut(s) 118, 132, 183, 598, 732, 964
EarI CTCTTC 6 cut(s) 118, 132, 183, 598, 732, 964
Eco31I GGTCTC 2 cut(s) 163, 266
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 1026
Eco81I CCTNAGG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 3 cut(s) 508, 564, 1077
EcoT22I ATGCAT 1 cut(s) 898
Esp3I CGTCTC 2 cut(s) 328, 347
FaeI CATG 1 cut(s) 356
FaiI YATR 9 cut(s) 164, 354, 425, 533, 580, 675, 677, 770, 917
FaqI GGGAC 1 cut(s) 811
FatI CATG 1 cut(s) 352
FauI CCCGC 1 cut(s) 957
FbaI TGATCA 2 cut(s) 475, 988
Fnu4HI GCNGC 3 cut(s) 338, 546, 1032
FokI GGATG 4 cut(s) 227, 407, 771, 1024
Fsp4HI GCNGC 3 cut(s) 338, 546, 1032
FspBI CTAG 1 cut(s) 171
GlaI GCGC 2 cut(s) 21, 738
GluI GCNGC 3 cut(s) 338, 546, 1032
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 4 cut(s) 183, 309, 329, 576
HapII CCGG 1 cut(s) 128
HgaI GACGC 2 cut(s) 120, 329
HhaI GCGC 2 cut(s) 22, 739
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 2 cut(s) 20, 737
HinP1I GCGC 2 cut(s) 20, 737
HincII GTYRAC 1 cut(s) 1098
HindII GTYRAC 1 cut(s) 1098
HinfI GANTC 5 cut(s) 86, 229, 646, 938, 975
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 784, 1098
Hpy188I TCNGA 5 cut(s) 91, 136, 252, 480, 1045
Hpy188III TCNNGA 3 cut(s) 34, 233, 827
Hpy8I GTNNAC 2 cut(s) 784, 1098
Hpy99I CGWCG 3 cut(s) 40, 211, 214
HpyAV CCTTC 3 cut(s) 10, 170, 451
HpyCH4III ACNGT 5 cut(s) 13, 40, 419, 721, 774
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 682, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 875, 1037
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 2 cut(s) 20, 737
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 2 cut(s) 475, 988
Kzo9I GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
LguI GCTCTTC 2 cut(s) 132, 732
LmnI GCTCC 3 cut(s) 69, 490, 734
Lsp1109I GCAGC 2 cut(s) 324, 1043
LweI GCATC 4 cut(s) 367, 691, 883, 905
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 148, 774
MalI GATC 7 cut(s) 477, 482, 831, 990, 1054, 1120, 1138
MboI GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 2 cut(s) 11, 263
MluCI AATT 1 cut(s) 471
MluI ACGCGT 1 cut(s) 778
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 898
MreI CGCCGGCG 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 998
MslI CAYNNNNRTG 1 cut(s) 842
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 3 cut(s) 510, 566, 1079
MvaI CCWGG 3 cut(s) 510, 566, 1079
MvnI CGCG 5 cut(s) 22, 35, 67, 226, 780
MwoI GCNNNNNNNGC 3 cut(s) 180, 875, 1037
NaeI GCCGGC 1 cut(s) 129
NdeII GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 356
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 148, 774
NruI TCGCGA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 898
NspV TTCGAA 1 cut(s) 1063
PciSI GCTCTTC 2 cut(s) 132, 732
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 229, 646, 938, 975
PkrI GCNGC 3 cut(s) 339, 547, 1033
Ple19I CGATCG 1 cut(s) 1139
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 3 cut(s) 508, 564, 1077
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 3 cut(s) 508, 564, 1077
PspPI GGNCC 3 cut(s) 328, 450, 575
PspPPI RGGWCCY 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 1118
PvuI CGATCG 1 cut(s) 1139
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 239, 613
RsaNI GTAC 2 cut(s) 238, 612
RseI CAYNNNNRTG 1 cut(s) 842
SapI GCTCTTC 2 cut(s) 132, 732
SaqAI TTAA 1 cut(s) 998
SatI GCNGC 3 cut(s) 338, 546, 1032
Sau3AI GATC 7 cut(s) 475, 480, 829, 988, 1052, 1118, 1136
Sau96I GGNCC 3 cut(s) 328, 450, 575
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 510, 566, 1079
SduI GDGCHC 2 cut(s) 11, 263
SfaNI GCATC 4 cut(s) 367, 691, 883, 905
SfcI CTRYAG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 1063
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 3 cut(s) 691, 1020, 1122
SmoI CTYRAG 3 cut(s) 691, 1020, 1122
Sse9I AATT 1 cut(s) 471
SsiI CCGC 4 cut(s) 67, 226, 546, 964
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 508, 564, 1077
TaaI ACNGT 5 cut(s) 13, 40, 419, 721, 774
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 287, 1063
TaqII GACCGA 1 cut(s) 1129
TasI AATT 1 cut(s) 471
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 4 cut(s) 229, 646, 938, 975
Tru1I TTAA 1 cut(s) 998
Tru9I TTAA 1 cut(s) 998
TscAI CASTG 5 cut(s) 18, 150, 712, 799, 1120
TseFI GTSAC 2 cut(s) 148, 774
TseI GCWGC 2 cut(s) 337, 1031
Tsp45I GTSAC 2 cut(s) 148, 774
TspDTI ATGAA 3 cut(s) 352, 757, 860
TspGWI ACGGA 2 cut(s) 227, 373
TspRI CASTG 5 cut(s) 18, 150, 712, 799, 1120
VpaK11BI GGWCC 1 cut(s) 450
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.