Rh5DG177800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001171
Physical Location & Seq
Reverse (-)
19610633 .. 19612802
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG177800.1

Sequence Viewer

Length: 1185 bp
ATGTTGGGCACAGTGAAGGCGCGTTGGGTGTTCGCGACGGTAGTGTTTTTCTCGGTGGTGGTTTCGCGGAGCAAACCGAGAGTTGAGTCGGAGAGAGAGAAGCCTTTTCTCTCTTCTTCTTCTTCGCCGGCGAAGTCGTCGTCGGCGTCCGAAGAGCCACTGGTCACTCTGGTCTCTATGGCTTCTAGCGAAGGAGGCCAAGAAGAGTTCTTCACCGAAACGACGACGGATGAGGGGTCGCGGAATCTGGAGTACGATTTCTATCGGAACTCGTGCCCTCAGGCAGAGACCATTGTGAGGTCGAAGATGGCTTGGATTTACGGCCAGCACAGGAACGTCTCGGCCCAGTTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTTCTCTTGGATGACAGCAATGGGGATAAAAACCGTTCTATAGAGAAGCAGGCTACACCAAATAGGTCCTTGAAGGGATTTGATAAAATTGATCAGATCAAGGAGGAGCTCGAAAATGTTTGTCCAGGGGTGGTATCTTGTGCCGATATACTTGTTCTTGCCGCCAGAGATGGCATTATCCTGGCTGGTGGCCCATACTATCCAGTTTTGACAGGTAGAAGAGATAGTACCCAGTCCTACTTTGATGTGGCATTGGAGGAGATTCCAAAACCTGATGACAATATCACTCATATATTGCATCTGTTCTCAAGTAGAGGTTTCAGTGAGAGAGAAACAGTTGCTCTTCTTGGAGCGCACAGCATTGGAAAGATAGGATGTGAATTCATACAGTCACGCGTAAACAACTTCACTGGGACAGGGCAACCAGACCCAGCCTTACCTCTTGATCTCCTCAATACGATGAAACTAAAATGCCAAGACAATGCTAACAGGGCGACCAGTAATACTGATGCATCTCAATCGTCTTTGTCCATATCATCTGGGGCAGTTTTTGATTCTCACTATTACCAGAACTTGTTGCGGGGAAGAGGGATCCTCTTTGCTGATCAGCAATTAATGGCTAATAGGATGACAGCTCAAGTGGTCGCAGCATTTGCTTCAGATAATGGATCGGCATTTCGAATGGACTTTGCCCAAGCAATGACGAAGATGTCAACACTTGGTGTCCTCACTGGATCTCAAGGTCAGGTGCGATCGGTCTGTTCTCTCCCAGTCAATAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

394

Amino Acids

43.15

Weight (kDa)

5.51

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 99 - 354 4.1e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1108
AccII CGCG 5 cut(s) 22, 35, 67, 241, 795
AciI CCGC 4 cut(s) 67, 241, 561, 979
AclWI GGATC 4 cut(s) 985, 998, 1075, 1141
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 779
AcuI CTGAAG 1 cut(s) 1041
AcyI GRCGYC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 1121
AfaI GTAC 2 cut(s) 254, 628
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 1 cut(s) 472
AjnI CCWGG 2 cut(s) 523, 579
AluBI AGCT 2 cut(s) 508, 1034
AluI AGCT 2 cut(s) 508, 1034
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 4 cut(s) 178, 281, 343, 362
AlwI GGATC 4 cut(s) 985, 998, 1075, 1141
AlwNI CAGNNNCTG 1 cut(s) 352
AoxI GGCC 4 cut(s) 196, 322, 342, 589
ApeKI GCWGC 2 cut(s) 352, 1046
ApoI RAATTY 1 cut(s) 779
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AseI ATTAAT 1 cut(s) 1013
AspLEI GCGC 2 cut(s) 22, 754
AspS9I GGNCC 3 cut(s) 343, 465, 590
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 1078
AvaII GGWCC 1 cut(s) 465
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 2 cut(s) 11, 278
BamHI GGATCC 1 cut(s) 990
BanII GRGCYC 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BauI CACGAG 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 339, 1058
BccI CCATC 2 cut(s) 301, 563
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciT130I CCWGG 2 cut(s) 525, 581
BclI TGATCA 2 cut(s) 490, 1003
BcoDI GTCTC 4 cut(s) 178, 281, 343, 362
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 3 cut(s) 353, 561, 1047
BlsI GCNGC 3 cut(s) 354, 562, 1048
Bme1390I CCNGG 2 cut(s) 525, 581
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 3 cut(s) 343, 465, 590
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 2 cut(s) 525, 581
BmrI ACTGGG 4 cut(s) 340, 625, 819, 1163
BmsI GCATC 4 cut(s) 382, 706, 898, 920
BmuI ACTGGG 4 cut(s) 340, 625, 819, 1163
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 1078
BpuEI CTTGAG 3 cut(s) 691, 1020, 1122
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 2 cut(s) 178, 281
BsaJI CCNNGG 1 cut(s) 524
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 8 cut(s) 165, 346, 602, 631, 814, 897, 1135, 1169
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 2 cut(s) 424, 1104
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 2 cut(s) 525, 581
BseDI CCNNGG 1 cut(s) 524
BseGI GGATG 4 cut(s) 235, 415, 779, 1032
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 2 cut(s) 424, 1104
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 8 cut(s) 165, 346, 602, 631, 814, 897, 1135, 1169
BseRI GAGGAG 3 cut(s) 518, 671, 839
BseSI GKGCMC 2 cut(s) 11, 278
BseXI GCAGC 2 cut(s) 339, 1058
BseYI CCCAGC 1 cut(s) 829
Bsh1236I CGCG 5 cut(s) 22, 35, 67, 241, 795
Bsh1285I CGRYCG 1 cut(s) 1154
BshFI GGCC 4 cut(s) 198, 324, 344, 591
BsiEI CGRYCG 1 cut(s) 1154
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 4 cut(s) 178, 281, 343, 362
BsmBI CGTCTC 2 cut(s) 343, 362
BsmFI GGGAC 1 cut(s) 826
BsnI GGCC 4 cut(s) 198, 324, 344, 591
Bso31I GGTCTC 2 cut(s) 178, 281
Bsp119I TTCGAA 1 cut(s) 1078
Bsp1286I GDGCHC 3 cut(s) 11, 278, 510
Bsp143I GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 4 cut(s) 67, 241, 561, 979
BspANI GGCC 4 cut(s) 198, 324, 344, 591
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 5 cut(s) 22, 35, 67, 241, 795
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 4 cut(s) 985, 998, 1075, 1141
BspQI GCTCTTC 2 cut(s) 147, 747
BspT104I TTCGAA 1 cut(s) 1078
BspTNI GGTCTC 2 cut(s) 178, 281
BsrDI GCAATG 2 cut(s) 424, 1104
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 8 cut(s) 165, 346, 602, 631, 814, 897, 1135, 1169
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 524
BssMI GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
BssNI GRCGYC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 525, 581
Bst4CI ACNGT 5 cut(s) 13, 40, 434, 736, 789
Bst6I CTCTTC 6 cut(s) 118, 147, 198, 613, 747, 979
BstACI GRCGYC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstBI TTCGAA 1 cut(s) 1078
BstC8I GCNNGC 3 cut(s) 129, 326, 450
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 4 cut(s) 235, 415, 779, 1032
BstFNI CGCG 5 cut(s) 22, 35, 67, 241, 795
BstHHI GCGC 2 cut(s) 22, 754
BstKTI GATC 8 cut(s) 493, 498, 847, 993, 1006, 1070, 1136, 1154
BstMAI GTCTC 4 cut(s) 178, 281, 343, 362
BstMBI GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
BstMCI CGRYCG 1 cut(s) 1154
BstMWI GCNNNNNNNGC 3 cut(s) 195, 890, 1052
BstNI CCWGG 2 cut(s) 525, 581
BstSCI CCNGG 2 cut(s) 523, 579
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 2 cut(s) 11, 278
BstUI CGCG 5 cut(s) 22, 35, 67, 241, 795
BstV1I GCAGC 2 cut(s) 339, 1058
BstX2I RGATCY 2 cut(s) 990, 1133
BstYI RGATCY 2 cut(s) 990, 1133
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 4 cut(s) 198, 324, 344, 591
BtsCI GGATG 4 cut(s) 235, 415, 779, 1032
BtsIMutI CAGTG 5 cut(s) 18, 158, 727, 807, 1128
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 129, 326, 450
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 2 cut(s) 22, 754
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 343, 465, 590
CseI GACGC 2 cut(s) 135, 344
Csp6I GTAC 2 cut(s) 253, 627
CviAII CATG 1 cut(s) 368
CviQI GTAC 2 cut(s) 253, 627
DdeI CTNAG 1 cut(s) 279
DpnI GATC 8 cut(s) 492, 497, 846, 992, 1005, 1069, 1135, 1153
DpnII GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
DraIII CACNNNGTG 1 cut(s) 1121
DrdI GACNNNNNNGTC 1 cut(s) 1108
DseDI GACNNNNNNGTC 1 cut(s) 1108
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 6 cut(s) 118, 147, 198, 613, 747, 979
EarI CTCTTC 6 cut(s) 118, 147, 198, 613, 747, 979
Ecl136II GAGCTC 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 2 cut(s) 178, 281
Eco47I GGWCC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 1041
Eco81I CCTNAGG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 523, 579
EcoT22I ATGCAT 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 510
Esp3I CGTCTC 2 cut(s) 343, 362
FaeI CATG 1 cut(s) 371
FaiI YATR 9 cut(s) 179, 369, 440, 548, 595, 690, 692, 785, 932
FaqI GGGAC 1 cut(s) 826
FatI CATG 1 cut(s) 367
FauI CCCGC 1 cut(s) 972
FbaI TGATCA 2 cut(s) 490, 1003
Fnu4HI GCNGC 3 cut(s) 353, 561, 1047
FokI GGATG 4 cut(s) 242, 422, 786, 1039
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 3 cut(s) 353, 561, 1047
FspBI CTAG 1 cut(s) 186
GlaI GCGC 2 cut(s) 21, 753
GluI GCNGC 3 cut(s) 353, 561, 1047
GsaI CCCAGC 1 cut(s) 833
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 4 cut(s) 198, 324, 344, 591
HapII CCGG 1 cut(s) 128
HgaI GACGC 2 cut(s) 135, 344
HhaI GCGC 2 cut(s) 22, 754
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 20, 752
HinP1I GCGC 2 cut(s) 20, 752
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HinfI GANTC 4 cut(s) 86, 244, 661, 953
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 799, 1113
Hpy188I TCNGA 5 cut(s) 91, 151, 267, 495, 1060
Hpy188III TCNNGA 3 cut(s) 34, 248, 842
Hpy8I GTNNAC 2 cut(s) 799, 1113
Hpy99I CGWCG 5 cut(s) 40, 142, 145, 226, 229
HpyAV CCTTC 3 cut(s) 10, 185, 466
HpyCH4III ACNGT 5 cut(s) 13, 40, 434, 736, 789
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 697, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 890, 1052
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 20, 752
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 2 cut(s) 490, 1003
Kzo9I GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
LguI GCTCTTC 2 cut(s) 147, 747
LmnI GCTCC 3 cut(s) 69, 505, 749
Lsp1109I GCAGC 2 cut(s) 339, 1058
LweI GCATC 4 cut(s) 382, 706, 898, 920
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 163, 789
MalI GATC 8 cut(s) 492, 497, 846, 992, 1005, 1069, 1135, 1153
MboI GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
MflI RGATCY 2 cut(s) 990, 1133
MhlI GDGCHC 3 cut(s) 11, 278, 510
MluCI AATT 3 cut(s) 486, 779, 1010
MluI ACGCGT 1 cut(s) 793
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 913
MreI CGCCGGCG 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 1013
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 525, 581
MvaI CCWGG 2 cut(s) 525, 581
MvnI CGCG 5 cut(s) 22, 35, 67, 241, 795
MwoI GCNNNNNNNGC 3 cut(s) 195, 890, 1052
NaeI GCCGGC 1 cut(s) 129
NdeII GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 992
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 163, 789
NruI TCGCGA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 913
NspV TTCGAA 1 cut(s) 1078
PciSI GCTCTTC 2 cut(s) 147, 747
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 244, 661, 953
PkrI GCNGC 3 cut(s) 354, 562, 1048
Ple19I CGATCG 1 cut(s) 1154
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 523, 579
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 2 cut(s) 523, 579
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 3 cut(s) 343, 465, 590
PspPPI RGGWCCY 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 2 cut(s) 990, 1133
PvuI CGATCG 1 cut(s) 1154
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 254, 628
RsaNI GTAC 2 cut(s) 253, 627
SacI GAGCTC 1 cut(s) 510
SapI GCTCTTC 2 cut(s) 147, 747
SaqAI TTAA 1 cut(s) 1013
SatI GCNGC 3 cut(s) 353, 561, 1047
Sau3AI GATC 8 cut(s) 490, 495, 844, 990, 1003, 1067, 1133, 1151
Sau96I GGNCC 3 cut(s) 343, 465, 590
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 525, 581
SduI GDGCHC 3 cut(s) 11, 278, 510
SfaNI GCATC 4 cut(s) 382, 706, 898, 920
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 1078
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 3 cut(s) 706, 1035, 1137
SmoI CTYRAG 3 cut(s) 706, 1035, 1137
Sse9I AATT 3 cut(s) 486, 779, 1010
SsiI CCGC 4 cut(s) 67, 241, 561, 979
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 523, 579
TaaI ACNGT 5 cut(s) 13, 40, 434, 736, 789
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 302, 510, 1078
TaqII GACCGA 1 cut(s) 1144
TasI AATT 3 cut(s) 486, 779, 1010
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 3 cut(s) 244, 661, 953
Tru1I TTAA 1 cut(s) 1013
Tru9I TTAA 1 cut(s) 1013
TscAI CASTG 5 cut(s) 18, 165, 727, 814, 1135
TseFI GTSAC 2 cut(s) 163, 789
TseI GCWGC 2 cut(s) 352, 1046
Tsp45I GTSAC 2 cut(s) 163, 789
TspDTI ATGAA 3 cut(s) 367, 772, 875
TspGWI ACGGA 2 cut(s) 242, 388
TspRI CASTG 5 cut(s) 18, 165, 727, 814, 1135
VpaK11BI GGWCC 1 cut(s) 465
VspI ATTAAT 1 cut(s) 1013
XapI RAATTY 1 cut(s) 779
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.