Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000384.1

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

33396 .. 33854

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000384.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ctgcaaaccccaaccattccggcttcaaacccacacacactcccacccccactctctctctggctctcctttacaaaccagaacgacgccgttgcagacctcacgagctcgccggcactgttgaagaagaagaagaagacgaagatgctgttagagacgaaagcgtggctggtcttcgccgtggcggtgatcatctctctacaaatctccttgaaaaatccgagaaccggcgaatcgaacatgaagctctctctctctccctccaatacaccgctcgtttcttttgtttctctcgcttctgacgacggcagcctagacgatttcttctccgagacaacgacgacgaacttgatgtcgcagaatctcaagtacgacttctaccggaacacgtgtcctcaggtcgaggggatcatgaggtcgaagatggcatggatttacaggcagcacaggaacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

9.48

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	274
AciI	CCGC	2 cut(s)	185, 272
AclWI	GGATC	1 cut(s)	416
AcvI	CACGTG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	2 cut(s)	387, 389
AgsI	TTSAA	3 cut(s)	27, 124, 214
AluBI	AGCT	2 cut(s)	108, 247
AluI	AGCT	2 cut(s)	108, 247
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	149, 326
AlwI	GGATC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	309, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsuHPI	GGTGA	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	103
BbrPI	CACGTG	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	143, 166
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	321, 454
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	3 cut(s)	74, 164, 322
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	149, 326
BfaI	CTAG	2 cut(s)	314, 457
BisI	GCNGC	2 cut(s)	310, 443
BlsI	GCNGC	2 cut(s)	311, 444
BmsI	GCATC	1 cut(s)	135
BpiI	GAAGAC	2 cut(s)	143, 166
BpuEI	CTTGAG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	2 cut(s)	112, 227
Bse21I	CCTNAGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	321, 454
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	20, 113, 228, 382
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	149, 326
BsmBI	CGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	189, 408
BspACI	CCGC	2 cut(s)	185, 272
BspCNI	CTCAG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	411
BspPI	GGATC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	274
BsrFI	RCCGGY	2 cut(s)	112, 227
BssAI	RCCGGY	2 cut(s)	112, 227
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	189, 408
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	110, 114
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	192, 411
BstMAI	GTCTC	2 cut(s)	149, 326
BstMBI	GATC	2 cut(s)	189, 408
BstV1I	GCAGC	2 cut(s)	321, 454
BstV2I	GAAGAC	2 cut(s)	143, 166
Bsu36I	CCTNAGG	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	110, 114
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	2 cut(s)	112, 227
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	3 cut(s)	241, 412, 429
CviJI	RGCY	6 cut(s)	23, 64, 108, 169, 247, 312
CviKI_1	RGCY	6 cut(s)	23, 64, 108, 169, 247, 312
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	191, 410
DpnII	GATC	2 cut(s)	189, 408
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
Eco72I	CACGTG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	3 cut(s)	244, 415, 432
FaiI	YATR	3 cut(s)	242, 413, 430
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	3 cut(s)	240, 411, 428
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	310, 443
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	310, 443
FspBI	CTAG	2 cut(s)	314, 457
GluI	GCNGC	2 cut(s)	310, 443
HapII	CCGG	4 cut(s)	20, 113, 228, 382
HgaI	GACGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	244, 415, 432
HinfI	GANTC	2 cut(s)	233, 361
HpaII	CCGG	4 cut(s)	20, 113, 228, 382
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	222, 301, 331
Hpy188III	TCNNGA	2 cut(s)	103, 412
Hpy99I	CGWCG	4 cut(s)	89, 308, 343, 346
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	4, 95
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	244, 415, 432
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 408
Lsp1109I	GCAGC	2 cut(s)	321, 454
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	314, 457
MaeII	ACGT	1 cut(s)	389
MalI	GATC	2 cut(s)	191, 410
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	2 cut(s)	189, 408
MboII	GAAGA	9 cut(s)	136, 139, 142, 145, 148, 154, 166, 316, 433
MhlI	GDGCHC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	110, 271, 397, 405, 408
MroNI	GCCGGC	1 cut(s)	112
MspI	CCGG	4 cut(s)	20, 113, 228, 382
NaeI	GCCGGC	1 cut(s)	114
NdeII	GATC	2 cut(s)	189, 408
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	244, 415, 432
PagI	TCATGA	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	233, 361
PkrI	GCNGC	2 cut(s)	311, 444
PmaCI	CACGTG	1 cut(s)	390
PmlI	CACGTG	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	390
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	310, 443
Sau3AI	GATC	2 cut(s)	189, 408
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	102, 110, 249, 392, 402, 419
SfaNI	GCATC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	2 cut(s)	185, 272
SspMI	CTAG	2 cut(s)	314, 457
SstI	GAGCTC	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	236, 402, 419
TfiI	GAWTC	2 cut(s)	233, 361
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	2 cut(s)	309, 442
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	2 cut(s)	314, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.