Rh5CG196200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001171
Physical Location & Seq
Reverse (-)
19499780 .. 19502760
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG196200.1

Sequence Viewer

Length: 1191 bp
ATGTTGGGCACAGTGAAGGCGCGTTGGGTGTTCGCGACGGTGGTGTTTTTATCGGTGGTGGTTTCGCGGAGCAAACCGAGAGTTGAGTCGGAGAGAGAGAAGCCTTTTCTCTCTTCTTCTTCTTCTTCTTCGCAGGCGAAGTTGTCGTCGGCGTCCGAAGAACCACTGGTCACTCTGGTCTCTATGGCTTCTAGTGACGGAGGCCAAGCAGAGTTCTACACCGAAACGACGACGGATGAGGGGTCGCGGAATCTGGAGTACGATTTCTATCGGAACTCGTGCCCTCAGGCAGAGACCATTGTGAGGTCGAAGATGGCTTGGATTTACGGCCAGCACAGGAACGTCTCGGCCCAGTTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTTCTCTTGGATGACAGCAATGGGGATAAAAACCGTTCTATAGAGAAGCAGGCTACACCAAATAGGTCCTTGAAGGGATTTGATAAAATTGATCAGATCAAGGAGGAGCTCGAAAATGTTTGTCCAGGGGTGGTATCTTGTGCCGATATACTTGTTCTTGCCGCCAGAGATGGCATTATCCTGGCTGGTGGCCCATACTATCCAGTTTTGACAGGTAGAAGAGATAGTACCCGGTCCTACTTTGATGTGGCATTGGAGGAGATTCCAAAACCTGATGACAATATCACTCATATATTGCATCTGTTCTCAAGTAGAGGTTTCAGTGAGAGAGAAACAGTTGCTCTTCTTGGAGCGCACAACATTGGAAAGATAGGATGTGAGTTCATACAGTCACGCGTAAACAACTTCACTGGGACAGGGCAACCAGACCCAGCCTTACCTCTAGATCTCCTCACTACGATGAAACTAAAATGCCAAGACAATGCTAACAGGGCGACCAGTAATACTGATGCATCTCAATCGTCTTTGTCCATATCTTCTGGGGCAGTTTTTGACTCTCACTATTACCAGAACTTGTTGCGGGGAAGAGGAATCCTCTTTGCTGATCAGCAATTAATGGCTAATAGGATGACAGCTCAAGTGGTCGCAGCATTTGCTTCAGATAATGGATCGGCATTTCGAATGGACTTTGCCCAGGCAATGACGAAGATGTCAACACTTGGTGTCCTCACTGGATCTCAAGGTCAGGTGCGATCGGTCTGTTCTCTCCCAGTCAATAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

396

Amino Acids

43.33

Weight (kDa)

5.77

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 101 - 356 8.9e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1114
AccII CGCG 5 cut(s) 22, 35, 67, 247, 801
AciI CCGC 4 cut(s) 67, 247, 567, 985
AclWI GGATC 2 cut(s) 1081, 1147
AcoI YGGCCR 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 1127
AfaI GTAC 2 cut(s) 260, 634
AfiI CCNNNNNNNGG 1 cut(s) 303
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 1 cut(s) 478
AjnI CCWGG 3 cut(s) 529, 585, 1098
AluBI AGCT 2 cut(s) 514, 1040
AluI AGCT 2 cut(s) 514, 1040
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 4 cut(s) 184, 287, 349, 368
AlwI GGATC 2 cut(s) 1081, 1147
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 4 cut(s) 202, 328, 348, 595
ApeKI GCWGC 2 cut(s) 358, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 1019
AspLEI GCGC 2 cut(s) 22, 760
AspS9I GGNCC 4 cut(s) 349, 471, 596, 639
AsuC2I CCSGG 1 cut(s) 637
AsuII TTCGAA 1 cut(s) 1084
AvaII GGWCC 2 cut(s) 471, 639
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 11, 284
BanII GRGCYC 1 cut(s) 516
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 345, 1064
BccI CCATC 2 cut(s) 307, 569
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciT130I CCWGG 3 cut(s) 531, 587, 1100
BclI TGATCA 2 cut(s) 496, 1009
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 4 cut(s) 184, 287, 349, 368
BfaI CTAG 2 cut(s) 192, 848
BfmI CTRYAG 1 cut(s) 444
BglII AGATCT 1 cut(s) 850
BisI GCNGC 3 cut(s) 359, 567, 1053
BlsI GCNGC 3 cut(s) 360, 568, 1054
Bme1390I CCNGG 4 cut(s) 531, 587, 637, 1100
Bme18I GGWCC 2 cut(s) 471, 639
BmgT120I GGNCC 4 cut(s) 349, 471, 596, 639
BmrFI CCNGG 4 cut(s) 531, 587, 637, 1100
BmrI ACTGGG 3 cut(s) 346, 825, 1169
BmsI GCATC 4 cut(s) 388, 712, 904, 926
BmuI ACTGGG 3 cut(s) 346, 825, 1169
BplI GAGNNNNNCTC 2 cut(s) 984, 1016
BpmI CTGGAG 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 1084
BpuEI CTTGAG 3 cut(s) 697, 1026, 1128
BpuMI CCSGG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 152
BsaI GGTCTC 2 cut(s) 184, 287
BsaJI CCNNGG 2 cut(s) 530, 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 7 cut(s) 171, 352, 608, 820, 903, 1141, 1175
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 2 cut(s) 430, 1110
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 3 cut(s) 531, 587, 1100
BseDI CCNNGG 2 cut(s) 530, 1098
BseGI GGATG 4 cut(s) 241, 421, 785, 1038
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMI GCAATG 2 cut(s) 430, 1110
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 7 cut(s) 171, 352, 608, 820, 903, 1141, 1175
BseRI GAGGAG 3 cut(s) 524, 677, 845
BseSI GKGCMC 2 cut(s) 11, 284
BseXI GCAGC 2 cut(s) 345, 1064
BseYI CCCAGC 1 cut(s) 835
Bsh1236I CGCG 5 cut(s) 22, 35, 67, 247, 801
Bsh1285I CGRYCG 1 cut(s) 1160
BshFI GGCC 4 cut(s) 204, 330, 350, 597
BsiEI CGRYCG 1 cut(s) 1160
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 637
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 4 cut(s) 184, 287, 349, 368
BsmBI CGTCTC 2 cut(s) 349, 368
BsmFI GGGAC 1 cut(s) 832
BsnI GGCC 4 cut(s) 204, 330, 350, 597
Bso31I GGTCTC 2 cut(s) 184, 287
Bsp119I TTCGAA 1 cut(s) 1084
Bsp1286I GDGCHC 3 cut(s) 11, 284, 516
Bsp143I GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 4 cut(s) 67, 247, 567, 985
BspANI GGCC 4 cut(s) 204, 330, 350, 597
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 5 cut(s) 22, 35, 67, 247, 801
BspPI GGATC 2 cut(s) 1081, 1147
BspQI GCTCTTC 1 cut(s) 753
BspT104I TTCGAA 1 cut(s) 1084
BspTNI GGTCTC 2 cut(s) 184, 287
BsrDI GCAATG 2 cut(s) 430, 1110
BsrI ACTGG 7 cut(s) 171, 352, 608, 820, 903, 1141, 1175
BssECI CCNNGG 2 cut(s) 530, 1098
BssMI GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
BssNI GRCGYC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 3 cut(s) 531, 587, 1100
Bst4CI ACNGT 5 cut(s) 13, 40, 440, 742, 795
Bst6I CTCTTC 4 cut(s) 118, 619, 753, 985
BstACI GRCGYC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstBI TTCGAA 1 cut(s) 1084
BstC8I GCNNGC 3 cut(s) 135, 332, 456
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 4 cut(s) 241, 421, 785, 1038
BstFNI CGCG 5 cut(s) 22, 35, 67, 247, 801
BstHHI GCGC 2 cut(s) 22, 760
BstKTI GATC 7 cut(s) 499, 504, 853, 1012, 1076, 1142, 1160
BstMAI GTCTC 4 cut(s) 184, 287, 349, 368
BstMBI GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
BstMCI CGRYCG 1 cut(s) 1160
BstMWI GCNNNNNNNGC 2 cut(s) 896, 1058
BstNI CCWGG 3 cut(s) 531, 587, 1100
BstSCI CCNGG 4 cut(s) 529, 585, 635, 1098
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 2 cut(s) 11, 284
BstUI CGCG 5 cut(s) 22, 35, 67, 247, 801
BstV1I GCAGC 2 cut(s) 345, 1064
BstX2I RGATCY 2 cut(s) 850, 1139
BstYI RGATCY 2 cut(s) 850, 1139
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 4 cut(s) 204, 330, 350, 597
BtsCI GGATG 4 cut(s) 241, 421, 785, 1038
BtsIMutI CAGTG 5 cut(s) 18, 164, 733, 813, 1134
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 135, 332, 456
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 2 cut(s) 22, 760
Cfr13I GGNCC 4 cut(s) 349, 471, 596, 639
CseI GACGC 2 cut(s) 141, 350
Csp6I GTAC 2 cut(s) 259, 633
CviAII CATG 1 cut(s) 374
CviQI GTAC 2 cut(s) 259, 633
DdeI CTNAG 1 cut(s) 285
DpnI GATC 7 cut(s) 498, 503, 852, 1011, 1075, 1141, 1159
DpnII GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
DraIII CACNNNGTG 1 cut(s) 1127
DrdI GACNNNNNNGTC 1 cut(s) 1114
DseDI GACNNNNNNGTC 1 cut(s) 1114
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 4 cut(s) 118, 619, 753, 985
EarI CTCTTC 4 cut(s) 118, 619, 753, 985
Ecl136II GAGCTC 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 2 cut(s) 184, 287
Eco47I GGWCC 2 cut(s) 471, 639
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 1047
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 471
EcoRII CCWGG 3 cut(s) 529, 585, 1098
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 516
Esp3I CGTCTC 2 cut(s) 349, 368
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 185, 375, 446, 554, 601, 696, 698, 791, 938
FaqI GGGAC 1 cut(s) 832
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 978
FbaI TGATCA 2 cut(s) 496, 1009
Fnu4HI GCNGC 3 cut(s) 359, 567, 1053
FokI GGATG 4 cut(s) 248, 428, 792, 1045
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 3 cut(s) 359, 567, 1053
FspBI CTAG 2 cut(s) 192, 848
GlaI GCGC 2 cut(s) 21, 759
GluI GCNGC 3 cut(s) 359, 567, 1053
GsaI CCCAGC 1 cut(s) 839
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 4 cut(s) 204, 330, 350, 597
HapII CCGG 1 cut(s) 637
HgaI GACGC 2 cut(s) 141, 350
HhaI GCGC 2 cut(s) 22, 760
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 2 cut(s) 20, 758
HinP1I GCGC 2 cut(s) 20, 758
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HinfI GANTC 5 cut(s) 86, 250, 667, 959, 996
HpaII CCGG 1 cut(s) 637
Hpy166II GTNNAC 2 cut(s) 805, 1119
Hpy188I TCNGA 5 cut(s) 91, 157, 273, 501, 1066
Hpy188III TCNNGA 3 cut(s) 34, 254, 848
Hpy8I GTNNAC 2 cut(s) 805, 1119
Hpy99I CGWCG 4 cut(s) 40, 151, 232, 235
HpyAV CCTTC 2 cut(s) 10, 472
HpyCH4III ACNGT 5 cut(s) 13, 40, 440, 742, 795
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 703, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 896, 1058
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 2 cut(s) 20, 758
Ksp22I TGATCA 2 cut(s) 496, 1009
Kzo9I GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 3 cut(s) 69, 511, 755
Lsp1109I GCAGC 2 cut(s) 345, 1064
LweI GCATC 4 cut(s) 388, 712, 904, 926
MaeI CTAG 2 cut(s) 192, 848
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 169, 194, 795
MalI GATC 7 cut(s) 498, 503, 852, 1011, 1075, 1141, 1159
MboI GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
MflI RGATCY 2 cut(s) 850, 1139
MhlI GDGCHC 3 cut(s) 11, 284, 516
MluCI AATT 2 cut(s) 492, 1016
MluI ACGCGT 1 cut(s) 799
MlyI GAGTC 2 cut(s) 95, 953
MmeI TCCRAC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 1 cut(s) 1019
MslI CAYNNNNRTG 1 cut(s) 863
MspI CCGG 1 cut(s) 637
MspR9I CCNGG 4 cut(s) 531, 587, 637, 1100
MvaI CCWGG 3 cut(s) 531, 587, 1100
MvnI CGCG 5 cut(s) 22, 35, 67, 247, 801
MwoI GCNNNNNNNGC 2 cut(s) 896, 1058
NciI CCSGG 1 cut(s) 637
NdeII GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
NlaIII CATG 1 cut(s) 377
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 3 cut(s) 169, 194, 795
NruI TCGCGA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 919
NspV TTCGAA 1 cut(s) 1084
PciSI GCTCTTC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 250, 667, 996
PkrI GCNGC 3 cut(s) 360, 568, 1054
Ple19I CGATCG 1 cut(s) 1160
PleI GAGTC 2 cut(s) 94, 953
PpsI GAGTC 2 cut(s) 94, 953
PpuMI RGGWCCY 1 cut(s) 471
PshBI ATTAAT 1 cut(s) 1019
Psp124BI GAGCTC 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 471
Psp6I CCWGG 3 cut(s) 529, 585, 1098
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 3 cut(s) 529, 585, 1098
PspPI GGNCC 4 cut(s) 349, 471, 596, 639
PspPPI RGGWCCY 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 850, 1139
PvuI CGATCG 1 cut(s) 1160
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 260, 634
RsaNI GTAC 2 cut(s) 259, 633
RseI CAYNNNNRTG 1 cut(s) 863
SacI GAGCTC 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 1 cut(s) 1019
SatI GCNGC 3 cut(s) 359, 567, 1053
Sau3AI GATC 7 cut(s) 496, 501, 850, 1009, 1073, 1139, 1157
Sau96I GGNCC 4 cut(s) 349, 471, 596, 639
SchI GAGTC 2 cut(s) 95, 953
ScrFI CCNGG 4 cut(s) 531, 587, 637, 1100
SduI GDGCHC 3 cut(s) 11, 284, 516
SfaNI GCATC 4 cut(s) 388, 712, 904, 926
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 1084
SinI GGWCC 2 cut(s) 471, 639
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 3 cut(s) 712, 1041, 1143
SmoI CTYRAG 3 cut(s) 712, 1041, 1143
Sse9I AATT 2 cut(s) 492, 1016
SsiI CCGC 4 cut(s) 67, 247, 567, 985
SspMI CTAG 2 cut(s) 192, 848
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 4 cut(s) 529, 585, 635, 1098
TaaI ACNGT 5 cut(s) 13, 40, 440, 742, 795
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 308, 516, 1084
TaqII GACCGA 1 cut(s) 1150
TasI AATT 2 cut(s) 492, 1016
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 3 cut(s) 250, 667, 996
Tru1I TTAA 1 cut(s) 1019
Tru9I TTAA 1 cut(s) 1019
TscAI CASTG 5 cut(s) 18, 171, 733, 820, 1141
TseFI GTSAC 3 cut(s) 169, 194, 795
TseI GCWGC 2 cut(s) 358, 1052
Tsp45I GTSAC 3 cut(s) 169, 194, 795
TspDTI ATGAA 3 cut(s) 373, 778, 881
TspGWI ACGGA 3 cut(s) 213, 248, 394
TspRI CASTG 5 cut(s) 18, 171, 733, 820, 1141
VpaK11BI GGWCC 2 cut(s) 471, 639
VspI ATTAAT 1 cut(s) 1019
XbaI TCTAGA 1 cut(s) 847
XspI CTAG 2 cut(s) 192, 848
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.