FvH4_3g15230

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001171
Physical Location & Seq
Reverse (-)
9459761 .. 9462048
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15230.t1

Sequence Viewer

Length: 1035 bp
ATGTTAGGAACAGTGAAGGCACAGTGGCTGTTCGCGACGGTGGTGTTGTTCTCGGTGGTGGTTTCGTGTATGGCGACGGATGAGGCGTCGGGGAATATGGAGTACGATTTCTATAGGAGCTCGTGTCCTCAGGCCGAGACCATTGTGAGGACGAAGATGGCTTGGATTTACCGGCAGCACAGGAACGTCTCGGCTCAGTTGCTGCGTCTATTTTTCCATGACTGCTTCATTAAGGGGTGTGATGCTTCCGTTCTCTTGGATGACAGCAATGGGAATACAAACCATTCTATAGAGAAGCAGGCCACACCAAATAAGTCCCTGAAGGGATTCGATAACATTGATCAGATCAAGGAGGAGCTCGAAAAAGCTTGTCCAGGGGTGGTATCTTGTGCCGATGCACTTGCTCTTGCCACCAGAGATGGCATCATTCTGGCTGGTGGCCCATACTATCCAGTCTTGACAGGTAGAAAAGACAGCACACAGTCCTACTTTGATGAAGCATTGGAGGAGATTCCAAGACCTGATGACAATATCACTCATATATTGCATCTCTTCTCAAGTAGAGGTTTCAGTGATAGAGAAACAGTTGCTCTTCTCGGAGCACACAACATTGGAAAGATAGGATGCGAGTTCATCGAGTCGCGCTTAAAAAACTTCACTGGGACAGGGCAACCAGACCCAGCTTTACCTGTTGATCTCCTCAATACTATGAAGCTAAAATGCGTTGACAATGCTAACAAGGCCATTAGTAATGGTCATCCCACTCAATCTTCTTTGTCCATGTCATCTGGGGCAGTTTTCGACTCTCATTATTACCAGAACTTGATGCGAGGAAGAGGAATCCTCTTTGCTGATCAGCAGCTAATGGCTGATATGAGGACAGCTCAAGTGGTTGCAACATTTGCTTCTGATAATGGAACGGCGTTTCGGATGGACTTTGCGCAGGCAATGGCCAAGATGTCAACACTTGGTGTCCTTACTGGATCTCAAGGTCAGGTGCGATCGGTCTGTTCTCTGCCGGTAGACTACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

345

Amino Acids

37.75

Weight (kDa)

5.76

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 304 6.1e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 942
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 2 cut(s) 35, 643
AclWI GGATC 1 cut(s) 991
AcoI YGGCCR 1 cut(s) 951
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 86
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 147
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 7 cut(s) 120, 358, 368, 683, 715, 862, 884
AluI AGCT 7 cut(s) 120, 358, 368, 683, 715, 862, 884
Alw21I GWGCWC 3 cut(s) 122, 360, 604
Alw26I GTCTC 2 cut(s) 131, 193
AlwI GGATC 1 cut(s) 991
AlwNI CAGNNNCTG 2 cut(s) 28, 202
AoxI GGCC 5 cut(s) 132, 300, 439, 741, 951
ApeKI GCWGC 3 cut(s) 175, 202, 859
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 645, 943
AspS9I GGNCC 1 cut(s) 440
AxyI CCTNAGG 1 cut(s) 129
BalI TGGCCA 1 cut(s) 953
BanII GRGCYC 2 cut(s) 122, 360
BauI CACGAG 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 122, 360, 604
BbvI GCAGC 3 cut(s) 187, 189, 871
BccI CCATC 3 cut(s) 151, 413, 925
BceAI ACGGC 1 cut(s) 936
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 2 cut(s) 340, 853
BcoDI GTCTC 2 cut(s) 131, 193
BfmI CTRYAG 2 cut(s) 112, 288
BisI GCNGC 3 cut(s) 176, 203, 860
BlsI GCNGC 3 cut(s) 177, 204, 861
Bme1390I CCNGG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 375
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 6 cut(s) 232, 385, 432, 556, 614, 816
BmuI ACTGGG 1 cut(s) 669
BplI GAGNNNNNCTC 4 cut(s) 828, 860, 868, 900
BpuEI CTTGAG 3 cut(s) 541, 870, 972
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse118I RCCGGY 2 cut(s) 171, 1018
Bse1I ACTGG 3 cut(s) 452, 664, 985
Bse21I CCTNAGG 1 cut(s) 129
Bse3DI GCAATG 2 cut(s) 274, 954
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 5 cut(s) 85, 265, 629, 757, 936
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 2 cut(s) 274, 954
BseMII CTCAG 2 cut(s) 143, 209
BseNI ACTGG 3 cut(s) 452, 664, 985
BseRI GAGGAG 3 cut(s) 368, 521, 689
BseXI GCAGC 3 cut(s) 187, 189, 871
BseYI CCCAGC 1 cut(s) 679
Bsh1236I CGCG 2 cut(s) 35, 643
Bsh1285I CGRYCG 1 cut(s) 1004
BshFI GGCC 5 cut(s) 134, 302, 441, 743, 953
BsiEI CGRYCG 1 cut(s) 1004
BsiHKAI GWGCWC 3 cut(s) 122, 360, 604
BsiSI CCGG 2 cut(s) 172, 1019
BslFI GGGAC 2 cut(s) 301, 676
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 131, 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 301, 676
BsnI GGCC 5 cut(s) 134, 302, 441, 743, 953
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 122, 360, 604
Bsp143I GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 5 cut(s) 134, 302, 441, 743, 953
BspCNI CTCAG 2 cut(s) 142, 208
BspFNI CGCG 2 cut(s) 35, 643
BspPI GGATC 1 cut(s) 991
BspQI GCTCTTC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 274, 954
BsrFI RCCGGY 2 cut(s) 171, 1018
BsrI ACTGG 3 cut(s) 452, 664, 985
BssAI RCCGGY 2 cut(s) 171, 1018
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
BssNI GRCGYC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 5 cut(s) 13, 24, 40, 483, 586
Bst6I CTCTTC 3 cut(s) 557, 597, 829
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 2 cut(s) 300, 945
BstDEI CTNAG 2 cut(s) 129, 195
BstF5I GGATG 5 cut(s) 85, 265, 629, 757, 936
BstFNI CGCG 2 cut(s) 35, 643
BstHHI GCGC 2 cut(s) 645, 943
BstKTI GATC 6 cut(s) 343, 348, 697, 856, 986, 1004
BstMAI GTCTC 2 cut(s) 131, 193
BstMBI GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
BstMCI CGRYCG 1 cut(s) 1004
BstMWI GCNNNNNNNGC 2 cut(s) 740, 902
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 112, 288
BstUI CGCG 2 cut(s) 35, 643
BstV1I GCAGC 3 cut(s) 187, 189, 871
BstX2I RGATCY 1 cut(s) 983
BstYI RGATCY 1 cut(s) 983
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 5 cut(s) 134, 302, 441, 743, 953
BtsCI GGATG 5 cut(s) 85, 265, 629, 757, 936
BtsIMutI CAGTG 4 cut(s) 18, 29, 577, 657
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 300, 945
CaiI CAGNNNCTG 2 cut(s) 28, 202
CfoI GCGC 2 cut(s) 645, 943
Cfr10I RCCGGY 2 cut(s) 171, 1018
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 2 cut(s) 75, 194
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 218, 781
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 129, 195
DpnI GATC 6 cut(s) 342, 347, 696, 855, 985, 1003
DpnII GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
DraIII CACNNNGTG 1 cut(s) 971
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 3 cut(s) 557, 597, 829
EarI CTCTTC 3 cut(s) 557, 597, 829
Ecl136II GAGCTC 2 cut(s) 120, 358
Eco24I GRGCYC 2 cut(s) 122, 360
Eco31I GGTCTC 1 cut(s) 131
Eco53kI GAGCTC 2 cut(s) 120, 358
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 129
EcoICRI GAGCTC 2 cut(s) 120, 358
EcoRII CCWGG 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 122, 360
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 2 cut(s) 221, 784
FaqI GGGAC 2 cut(s) 301, 676
FatI CATG 2 cut(s) 217, 780
FbaI TGATCA 2 cut(s) 340, 853
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 3 cut(s) 176, 203, 860
FokI GGATG 5 cut(s) 92, 272, 636, 744, 943
FriOI GRGCYC 2 cut(s) 122, 360
Fsp4HI GCNGC 3 cut(s) 176, 203, 860
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 2 cut(s) 644, 942
GluI GCNGC 3 cut(s) 176, 203, 860
GsaI CCCAGC 1 cut(s) 683
HaeIII GGCC 5 cut(s) 134, 302, 441, 743, 953
HapII CCGG 2 cut(s) 172, 1019
HgaI GACGC 2 cut(s) 75, 194
HhaI GCGC 2 cut(s) 645, 943
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 221, 784
Hin6I GCGC 2 cut(s) 643, 941
HinP1I GCGC 2 cut(s) 643, 941
HincII GTYRAC 2 cut(s) 727, 963
HindII GTYRAC 2 cut(s) 727, 963
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 5 cut(s) 327, 511, 638, 803, 840
HpaII CCGG 2 cut(s) 172, 1019
Hpy166II GTNNAC 3 cut(s) 727, 963, 1024
Hpy188I TCNGA 4 cut(s) 345, 599, 910, 930
Hpy188III TCNNGA 2 cut(s) 34, 457
Hpy8I GTNNAC 3 cut(s) 727, 963, 1024
Hpy99I CGWCG 3 cut(s) 40, 79, 91
HpyAV CCTTC 2 cut(s) 10, 316
HpyCH4III ACNGT 5 cut(s) 13, 24, 40, 483, 586
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 398, 547, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 902
HpyF3I CTNAG 2 cut(s) 129, 195
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 221, 784
HspAI GCGC 2 cut(s) 643, 941
Ksp22I TGATCA 2 cut(s) 340, 853
Kzo9I GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 3 cut(s) 117, 355, 599
Lsp1109I GCAGC 3 cut(s) 187, 189, 871
LweI GCATC 6 cut(s) 232, 385, 432, 556, 614, 816
MaeII ACGT 1 cut(s) 186
MalI GATC 6 cut(s) 342, 347, 696, 855, 985, 1003
MboI GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
MboII GAAGA 5 cut(s) 166, 544, 584, 762, 846
MflI RGATCY 1 cut(s) 983
MhlI GDGCHC 3 cut(s) 122, 360, 604
MlsI TGGCCA 1 cut(s) 953
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 2 cut(s) 647, 797
Mox20I TGGCCA 1 cut(s) 953
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 953
MseI TTAA 3 cut(s) 231, 647, 1033
Msp20I TGGCCA 1 cut(s) 953
MspI CCGG 2 cut(s) 172, 1019
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 2 cut(s) 35, 643
MwoI GCNNNNNNNGC 2 cut(s) 740, 902
NdeII GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
NlaIII CATG 2 cut(s) 221, 784
NmeAIII GCCGAG 2 cut(s) 160, 170
NruI TCGCGA 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 83
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 327, 511, 840
PkrI GCNGC 3 cut(s) 177, 204, 861
Ple19I CGATCG 1 cut(s) 1004
PleI GAGTC 2 cut(s) 646, 797
PpsI GAGTC 2 cut(s) 646, 797
Psp124BI GAGCTC 2 cut(s) 122, 360
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 373
PspPI GGNCC 1 cut(s) 440
PstNI CAGNNNCTG 2 cut(s) 28, 202
PsuI RGATCY 1 cut(s) 983
PvuI CGATCG 1 cut(s) 1004
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 2 cut(s) 122, 360
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 3 cut(s) 231, 647, 1033
SatI GCNGC 3 cut(s) 176, 203, 860
Sau3AI GATC 6 cut(s) 340, 345, 694, 853, 983, 1001
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 2 cut(s) 647, 797
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 3 cut(s) 122, 360, 604
SfaNI GCATC 6 cut(s) 232, 385, 432, 556, 614, 816
SfcI CTRYAG 2 cut(s) 112, 288
SmlI CTYRAG 3 cut(s) 556, 885, 987
SmoI CTYRAG 3 cut(s) 556, 885, 987
SstI GAGCTC 2 cut(s) 122, 360
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 5 cut(s) 13, 24, 40, 483, 586
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 330, 360, 636, 801
TaqII GACCGA 1 cut(s) 994
TfiI GAWTC 3 cut(s) 327, 511, 840
Tru1I TTAA 3 cut(s) 231, 647, 1033
Tru9I TTAA 3 cut(s) 231, 647, 1033
TscAI CASTG 4 cut(s) 18, 29, 577, 664
TseI GCWGC 3 cut(s) 175, 202, 859
TspDTI ATGAA 4 cut(s) 217, 510, 622, 725
TspGWI ACGGA 2 cut(s) 92, 238
TspRI CASTG 4 cut(s) 18, 29, 577, 664
XmiI GTMKAC 1 cut(s) 1023
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.