Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002137.1

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

12894 .. 14403

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002137.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgttgttcgagacgagagcgtggctggtcttcttcgtggcagtgatcatctccctgcgaatctccttcaacattccgagaaccggcgaatccaacaggaagccctctctctcttcctccgacgaaccactactcgtctctttcgtttctctcgcttctgtcgacggcggcctagacgacttcttctccgagacgacggcgacggacttgacgtcacagactctcgagtacgacttctaccggaacacgtgtcctcaggccgaggggctcgtgaggtcgaagatggcttggatttacggccagcacaggaacgcctcggctcagttgcttcgtctctttttccatgactgcttcattgaggggtgtgatgcttccgtgctcttggatgacagcaatgggaatacaaaccatgccatagagaagcaggctatacccaataagtccttgaagggctttgataaaattgatcagatcaaggagatgcttgaaaatgaatgtccgggggtggtatcttgtgccgacatacttactctcgccaccagagatgccattgttctggtgtgtttactgctactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

192

Amino Acids

21.35

Weight (kDa)

4.74

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	298
AcvI	CACGTG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	2 cut(s)	246, 248
AgsI	TTSAA	3 cut(s)	70, 448, 488
AhdI	GACNNNNNGTC	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	4 cut(s)	5, 142, 185, 338
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	169, 258, 298
AsuC2I	CCSGG	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	381
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	3 cut(s)	181, 213, 313
BclI	TGATCA	2 cut(s)	45, 466
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	4 cut(s)	5, 142, 185, 338
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	501
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	358, 471, 535
BpiI	GAAGAC	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	261, 315, 500
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	400
BseDI	CCNNGG	3 cut(s)	261, 315, 500
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	269, 335
BshFI	GGCC	3 cut(s)	171, 260, 300
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	84, 241, 500
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	4 cut(s)	5, 142, 185, 338
BsmBI	CGTCTC	4 cut(s)	5, 142, 185, 338
BsnI	GGCC	3 cut(s)	171, 260, 300
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	270, 381
Bsp143I	GATC	3 cut(s)	45, 466, 471
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	3 cut(s)	171, 260, 300
BspCNI	CTCAG	2 cut(s)	268, 334
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	261, 315, 500
BssMI	GATC	3 cut(s)	45, 466, 471
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	302, 426
BstDEI	CTNAG	2 cut(s)	255, 321
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	3 cut(s)	48, 469, 474
BstMAI	GTCTC	4 cut(s)	5, 142, 185, 338
BstMBI	GATC	3 cut(s)	45, 466, 471
BstSCI	CCNGG	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	171, 260, 300
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	302, 426
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	2 cut(s)	344, 410
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	255, 321
DpnI	GATC	3 cut(s)	47, 468, 473
DpnII	GATC	3 cut(s)	45, 466, 471
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	118
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	270
Eco72I	CACGTG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	4 cut(s)	5, 142, 185, 338
FaeI	CATG	2 cut(s)	347, 413
FaiI	YATR	5 cut(s)	345, 411, 416, 431, 524
FatI	CATG	2 cut(s)	343, 409
FbaI	TGATCA	2 cut(s)	45, 466
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	171, 260, 300
HapII	CCGG	3 cut(s)	84, 241, 500
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	347, 413
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	60, 89, 220
HpaII	CCGG	3 cut(s)	84, 241, 500
Hpy166II	GTNNAC	2 cut(s)	163, 566
Hpy188I	TCNGA	4 cut(s)	78, 121, 190, 471
Hpy188III	TCNNGA	3 cut(s)	10, 224, 271
Hpy8I	GTNNAC	2 cut(s)	163, 566
Hpy99I	CGWCG	4 cut(s)	125, 167, 199, 205
HpyAV	CCTTC	2 cut(s)	76, 442
HpyCH4IV	ACGT	2 cut(s)	212, 248
HpyF3I	CTNAG	2 cut(s)	255, 321
HpySE526I	ACGT	2 cut(s)	212, 248
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	347, 413
Ksp22I	TGATCA	2 cut(s)	45, 466
Kzo9I	GATC	3 cut(s)	45, 466, 471
LweI	GCATC	3 cut(s)	358, 471, 535
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	212, 248
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	47, 468, 473
MboI	GATC	3 cut(s)	45, 466, 471
MboII	GAAGA	5 cut(s)	22, 25, 105, 175, 292
MhlI	GDGCHC	2 cut(s)	270, 381
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	117, 144
MnlI	CCTC	7 cut(s)	115, 127, 256, 264, 267, 325, 352
MspI	CCGG	3 cut(s)	84, 241, 500
MspR9I	CCNGG	1 cut(s)	501
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	3 cut(s)	45, 466, 471
NlaIII	CATG	2 cut(s)	347, 413
NmeAIII	GCCGAG	2 cut(s)	286, 296
NmuCI	GTSAC	1 cut(s)	213
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 159, 209
PfeI	GAWTC	2 cut(s)	60, 89
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	249
PmlI	CACGTG	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	161
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	45, 466, 471
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	270, 381
SetI	ASST	3 cut(s)	215, 251, 278
SfaNI	GCATC	3 cut(s)	358, 471, 535
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	499
TaiI	ACGT	2 cut(s)	215, 251
TaqI	TCGA	4 cut(s)	9, 162, 225, 278
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	60, 89
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	343, 507
TspGWI	ACGGA	2 cut(s)	218, 364
TspRI	CASTG	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	173
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.