Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

13007913 .. 13012374

Gene Structure 4462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGCCCTCTCTCTCTTCCTCAGACAAACCGCTCGTCGCTTCTGACGACGGCGGCCTAGACGATTTCTTCTCCGAGACGACGACGACGATGGACTTAACGTCGCAGAATCTCAAGTACGATTTCTACCGGAACACGTGTCCTCAGGCCGAGTGGATCGTGAGGTTGAAGATGGCATGGATTTACGGGCAGCACAGGAACGCCTCGGCTCAGTTGCTTCGTCTCTTTTTCCATGACTGCTTCATTGAGTTGGATTCTTCTAGGAGCACCTCCCATGTTTGTCTCAATGACTGGATATTGGATGATATTGATGTTTTGCGTATGTCCTTTGATCTTAAGGACATACTAATTGCTGACTATTTGTTTGAGGAACAACTATTGGTGATCCTAGGGATTCACTATTGGGGATCTGAAGAAATGGATGTGGATAGTTATGTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

147

Amino Acids

17.08

Weight (kDa)

4.35

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	2 cut(s)	32, 54
AclWI	GGATC	3 cut(s)	164, 379, 415
AcuI	CTGAAG	1 cut(s)	432
AcvI	CACGTG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	335
AflIII	ACRYGT	2 cut(s)	135, 137
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	3 cut(s)	71, 227, 287
AlwI	GGATC	3 cut(s)	164, 379, 415
AoxI	GGCC	2 cut(s)	55, 147
ApeKI	GCWGC	1 cut(s)	190
ArsI	GACNNNNNNTTYG	4 cut(s)	21, 53, 347, 379
AspA2I	CCTAGG	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	394
AvrII	CCTAGG	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	85, 166
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	71, 227, 287
BfaI	CTAG	3 cut(s)	59, 261, 389
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	55, 191
BlnI	CCTAGG	1 cut(s)	388
BlsI	GCNGC	2 cut(s)	56, 192
BmeRI	GACNNNNNGTC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	204, 388
BsaWI	WCCGGW	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	204, 388
BseGI	GGATG	2 cut(s)	307, 427
BseMII	CTCAG	3 cut(s)	36, 158, 224
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	57, 149
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	130
BsmAI	GTCTC	3 cut(s)	71, 227, 287
BsmBI	CGTCTC	2 cut(s)	71, 227
BsnI	GGCC	2 cut(s)	57, 149
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	4 cut(s)	156, 331, 384, 407
BspACI	CCGC	2 cut(s)	32, 54
BspANI	GGCC	2 cut(s)	57, 149
BspCNI	CTCAG	3 cut(s)	35, 157, 223
BspPI	GGATC	3 cut(s)	164, 379, 415
BspTI	CTTAAG	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	204, 388
BssMI	GATC	4 cut(s)	156, 331, 384, 407
BssT1I	CCWWGG	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	22, 144, 210
BstF5I	GGATG	2 cut(s)	307, 427
BstKTI	GATC	4 cut(s)	159, 334, 387, 410
BstMAI	GTCTC	3 cut(s)	71, 227, 287
BstMBI	GATC	4 cut(s)	156, 331, 384, 407
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	57, 149
BtsCI	GGATG	2 cut(s)	307, 427
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	177, 233, 275
CviJI	RGCY	4 cut(s)	7, 57, 149, 209
CviKI_1	RGCY	4 cut(s)	7, 57, 149, 209
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	22, 144, 210
DpnI	GATC	4 cut(s)	158, 333, 386, 409
DpnII	GATC	4 cut(s)	156, 331, 384, 407
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
Esp3I	CGTCTC	2 cut(s)	71, 227
FaeI	CATG	3 cut(s)	180, 236, 278
FaiI	YATR	6 cut(s)	178, 234, 276, 323, 344, 435
FatI	CATG	3 cut(s)	176, 232, 274
Fnu4HI	GCNGC	2 cut(s)	55, 191
FokI	GGATG	2 cut(s)	314, 434
Fsp4HI	GCNGC	2 cut(s)	55, 191
FspBI	CTAG	3 cut(s)	59, 261, 389
GluI	GCNGC	2 cut(s)	55, 191
HaeIII	GGCC	2 cut(s)	57, 149
HapII	CCGG	1 cut(s)	130
Hin1II	CATG	3 cut(s)	180, 236, 278
HinfI	GANTC	3 cut(s)	109, 254, 394
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	4 cut(s)	25, 46, 76, 412
Hpy188III	TCNNGA	1 cut(s)	160
Hpy99I	CGWCG	6 cut(s)	41, 53, 85, 88, 91, 106
HpyCH4IV	ACGT	2 cut(s)	101, 137
HpyF3I	CTNAG	3 cut(s)	22, 144, 210
HpySE526I	ACGT	2 cut(s)	101, 137
Hsp92II	CATG	3 cut(s)	180, 236, 278
Kzo9I	GATC	4 cut(s)	156, 331, 384, 407
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	4 cut(s)	131, 143, 181, 277
Lsp1109I	GCAGC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	59, 261, 389
MaeII	ACGT	2 cut(s)	101, 137
MalI	GATC	4 cut(s)	158, 333, 386, 409
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	4 cut(s)	156, 331, 384, 407
MboII	GAAGA	5 cut(s)	9, 61, 181, 249, 425
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	19, 31, 153, 156, 214, 280, 361
MseI	TTAA	2 cut(s)	98, 336
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	130
NdeII	GATC	4 cut(s)	156, 331, 384, 407
NlaIII	CATG	3 cut(s)	180, 236, 278
NmeAIII	GCCGAG	2 cut(s)	175, 185
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 86
PfeI	GAWTC	3 cut(s)	109, 254, 394
PkrI	GCNGC	2 cut(s)	56, 192
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	98, 336
SatI	GCNGC	2 cut(s)	55, 191
Sau3AI	GATC	4 cut(s)	156, 331, 384, 407
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	4 cut(s)	104, 140, 167, 272
SmlI	CTYRAG	2 cut(s)	113, 335
SmoI	CTYRAG	2 cut(s)	113, 335
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	32, 54
SspMI	CTAG	3 cut(s)	59, 261, 389
StyI	CCWWGG	1 cut(s)	388
TaiI	ACGT	2 cut(s)	104, 140
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	109, 254, 394
Tru1I	TTAA	2 cut(s)	98, 336
Tru9I	TTAA	2 cut(s)	98, 336
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	17, 232
Vha464I	CTTAAG	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	388
XspI	CTAG	3 cut(s)	59, 261, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.