Rroxscaffold_1G00053510

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74456162 .. 74458907
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053510.1

Sequence Viewer

Length: 1221 bp
ATGTTGTTCGAGACGAAAGTGTGGCTGGTCTTCTTCGTGGCAGTGATCATCTCTCTGCGAATCTCCTTGAACAATCCGAGGACCGGCGAATCCAACATGAAGCCCTCTCTCTCTTCCTCCGACGAACCACTCGTCTCTTTCGTTTCTCTCGCTTCTGGCGACGGCAGCCTAGACGACTTCTTCTCCGAGACGACGACGACGGACTTGACGTCGCAGACTCTCGAGTACGACTTCTACCGGAACACGTGTCCTCAGGCCGAGGGGATCGTGAGGTCGAAGATGGCTTGGATTTACGGCCAGCACAGGAACGCCTCGGCTCAGTTGCTTCGTCTCTTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTGCTCTTGGATGACAGCAATGGGAATACAAACCATGCCATAGAGAAGCAGGCTATACCCAATAAGTCCTTGAAGGGCTTTGATAAAATTGATCAGATCAAGGAGATGCTTGAAAATGAATGTCCGGGGGTGGTATCTTGTGCCGACATACTTACTCTCGCCACCAGAGATGCCATTGTTCTGGCTGGTGGCCCCTTCTATCCAATTTTGACCGGAAGAAGAGACAGTACCCGCTCATTCTTTAATGAGGCAATGATGGGGATTCCAAGGCCAGATGACAACATCAATCAGACATTGCATCAGTTCTCACTGAGAGGTTTCGATGAGAGAGAAACAGTTGCTCTTCTAGGAGGGCACAACATTGGAAAGATAGGATGTGAGTTCATTATGTCACGTATCAACAACTTCAAGGGCACAGGGCAGCCAGACCCATCTATACCTCCTGAATTCCTTAGAGAGATGAAACTGAATTGTGAAGATGATAATAACGAGGCAACTAGTACTGCTGCTGCTGCATCTCCTTTGGTATCAAGGGGACTGAGTGAGAAGTTTACCACAGACGGGATGTCATACTATCAACAACTGTCTTCATCGGTATCATCAGGGGCTGGTTTTGACAGTCACTATTACCAGAGCTTGTTGAGGGGAAGAGGACTCCTCTTTGCTGATCAGCAATTAATGGCTAATAAAAGGACTGCTAGAATGGTCGCAGCATATGCTTCAGATGATGGATCAGCCTTTCAAATGGACTTTGCCCGGGCAATGATGAAGATGTCAGATCTTAATGTTCTCACTGGATCCCAAGGTCAAGTCCGTTTTGACTGTTCTCTCCCGACCCACAGTTCCTAA

Protein Analysis

406

Amino Acids

44.78

Weight (kDa)

5.05

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 90 - 366 2.3e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 606
AciI CCGC 1 cut(s) 604
AclWI GGATC 4 cut(s) 272, 1111, 1164, 1177
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 1 cut(s) 1077
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 3 cut(s) 227, 601, 874
AfiI CCNNNNNNNGG 2 cut(s) 83, 933
AflIII ACRYGT 2 cut(s) 243, 245
AgsI TTSAA 5 cut(s) 70, 445, 485, 781, 1115
AhdI GACNNNNNGTC 2 cut(s) 208, 937
AhlI ACTAGT 1 cut(s) 869
AluBI AGCT 1 cut(s) 1008
AluI AGCT 1 cut(s) 1008
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 5 cut(s) 5, 139, 182, 335, 588
AlwI GGATC 4 cut(s) 272, 1111, 1164, 1177
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 2 cut(s) 221, 1128
AoxI GGCC 4 cut(s) 255, 295, 562, 641
ApeKI GCWGC 6 cut(s) 165, 793, 878, 881, 884, 1082
ApoI RAATTY 1 cut(s) 818
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AseI ATTAAT 1 cut(s) 1049
AspS9I GGNCC 2 cut(s) 81, 563
AsuC2I CCSGG 3 cut(s) 498, 1129, 1130
AvaI CYCGRG 2 cut(s) 221, 1128
AvaII GGWCC 1 cut(s) 81
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 729, 788
BamHI GGATCC 1 cut(s) 1169
BarI GAAGNNNNNNTAC 2 cut(s) 583, 615
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 22, 951
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 6 cut(s) 177, 805, 865, 868, 871, 1094
BccI CCATC 4 cut(s) 274, 622, 811, 1094
BceAI ACGGC 2 cut(s) 178, 310
BclI TGATCA 3 cut(s) 45, 463, 1039
BcnI CCSGG 3 cut(s) 498, 1129, 1130
BcoDI GTCTC 5 cut(s) 5, 139, 182, 335, 588
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 4 cut(s) 170, 719, 870, 1071
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 6 cut(s) 166, 794, 879, 882, 885, 1083
BlsI GCNGC 6 cut(s) 167, 795, 880, 883, 886, 1084
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 3 cut(s) 498, 1129, 1130
Bme18I GGWCC 1 cut(s) 81
BmeRI GACNNNNNGTC 2 cut(s) 208, 937
BmeT110I CYCGRG 2 cut(s) 221, 1128
BmgT120I GGNCC 2 cut(s) 81, 563
BmiI GGNNCC 2 cut(s) 565, 1171
BmrFI CCNGG 3 cut(s) 498, 1129, 1130
BmsI GCATC 5 cut(s) 355, 468, 532, 679, 896
BpiI GAAGAC 2 cut(s) 22, 951
BplI GAGNNNNNCTC 2 cut(s) 1014, 1046
BpuMI CCSGG 3 cut(s) 498, 1129, 1130
BsaAI YACGTR 2 cut(s) 246, 767
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 7 cut(s) 77, 258, 312, 497, 638, 1128, 1174
BsaWI WCCGGW 2 cut(s) 237, 584
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 933
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 1171
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 4 cut(s) 397, 630, 665, 1140
BseDI CCNNGG 7 cut(s) 77, 258, 312, 497, 638, 1128, 1174
BseGI GGATG 3 cut(s) 388, 752, 942
BseLI CCNNNNNNNGG 2 cut(s) 83, 933
BseMI GCAATG 4 cut(s) 397, 630, 665, 1140
BseMII CTCAG 4 cut(s) 266, 332, 674, 902
BseNI ACTGG 1 cut(s) 1171
BseRI GAGGAG 1 cut(s) 1019
BseSI GKGCMC 2 cut(s) 729, 788
BseXI GCAGC 6 cut(s) 177, 805, 865, 868, 871, 1094
BshFI GGCC 4 cut(s) 257, 297, 564, 643
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 221, 1128
BsiSI CCGG 5 cut(s) 84, 238, 497, 585, 1129
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 2 cut(s) 83, 933
BsmAI GTCTC 5 cut(s) 5, 139, 182, 335, 588
BsmBI CGTCTC 4 cut(s) 5, 139, 182, 335
BsmFI GGGAC 1 cut(s) 921
BsnI GGCC 4 cut(s) 257, 297, 564, 643
BsoBI CYCGRG 2 cut(s) 221, 1128
Bsp1286I GDGCHC 3 cut(s) 378, 729, 788
Bsp143I GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
BspACI CCGC 1 cut(s) 604
BspANI GGCC 4 cut(s) 257, 297, 564, 643
BspCNI CTCAG 4 cut(s) 265, 331, 675, 903
BspLI GGNNCC 2 cut(s) 565, 1171
BspPI GGATC 4 cut(s) 272, 1111, 1164, 1177
BspQI GCTCTTC 1 cut(s) 720
BsrBI CCGCTC 1 cut(s) 606
BsrDI GCAATG 4 cut(s) 397, 630, 665, 1140
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 1171
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 7 cut(s) 77, 258, 312, 497, 638, 1128, 1174
BssMI GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 638, 1174
Bst4CI ACNGT 6 cut(s) 599, 709, 957, 992, 1196, 1214
Bst6I CTCTTC 4 cut(s) 118, 586, 720, 1015
BstACI GRCGYC 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstBAI YACGTR 2 cut(s) 246, 767
BstC8I GCNNGC 2 cut(s) 299, 423
BstDEI CTNAG 5 cut(s) 252, 318, 683, 824, 911
BstF5I GGATG 3 cut(s) 388, 752, 942
BstKTI GATC 8 cut(s) 48, 267, 466, 471, 1042, 1106, 1153, 1172
BstMAI GTCTC 5 cut(s) 5, 139, 182, 335, 588
BstMBI GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
BstMWI GCNNNNNNNGC 3 cut(s) 165, 884, 1088
BstSCI CCNGG 3 cut(s) 496, 1127, 1128
BstSLI GKGCMC 2 cut(s) 729, 788
BstV1I GCAGC 6 cut(s) 177, 805, 865, 868, 871, 1094
BstV2I GAAGAC 2 cut(s) 22, 951
BstX2I RGATCY 2 cut(s) 1150, 1169
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 2 cut(s) 1150, 1169
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 4 cut(s) 257, 297, 564, 643
BtsCI GGATG 3 cut(s) 388, 752, 942
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 680, 1164
Cac8I GCNNGC 2 cut(s) 299, 423
CaiI CAGNNNCTG 1 cut(s) 980
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 81, 563
Cfr9I CCCGGG 1 cut(s) 1128
Csp6I GTAC 3 cut(s) 226, 600, 873
CviAII CATG 3 cut(s) 97, 341, 407
CviQI GTAC 3 cut(s) 226, 600, 873
DdeI CTNAG 5 cut(s) 252, 318, 683, 824, 911
DpnI GATC 8 cut(s) 47, 266, 465, 470, 1041, 1105, 1152, 1171
DpnII GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
DriI GACNNNNNGTC 2 cut(s) 208, 937
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 4 cut(s) 118, 586, 720, 1015
Eam1105I GACNNNNNGTC 2 cut(s) 208, 937
EarI CTCTTC 4 cut(s) 118, 586, 720, 1015
Eco130I CCWWGG 2 cut(s) 638, 1174
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 1077
Eco72I CACGTG 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 252
Eco88I CYCGRG 2 cut(s) 221, 1128
EcoRI GAATTC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 638, 1174
ErhI CCWWGG 2 cut(s) 638, 1174
Esp3I CGTCTC 4 cut(s) 5, 139, 182, 335
FaeI CATG 3 cut(s) 100, 344, 410
FaqI GGGAC 1 cut(s) 921
FatI CATG 3 cut(s) 96, 340, 406
FauI CCCGC 1 cut(s) 611
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 3 cut(s) 45, 463, 1039
Fnu4HI GCNGC 6 cut(s) 166, 794, 879, 882, 885, 1083
FokI GGATG 3 cut(s) 395, 759, 949
Fsp4HI GCNGC 6 cut(s) 166, 794, 879, 882, 885, 1083
FspBI CTAG 4 cut(s) 170, 719, 870, 1071
GluI GCNGC 6 cut(s) 166, 794, 879, 882, 885, 1083
HaeIII GGCC 4 cut(s) 257, 297, 564, 643
HapII CCGG 5 cut(s) 84, 238, 497, 585, 1129
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 3 cut(s) 100, 344, 410
HinfI GANTC 5 cut(s) 60, 89, 217, 634, 1026
HpaII CCGG 5 cut(s) 84, 238, 497, 585, 1129
Hpy166II GTNNAC 1 cut(s) 924
Hpy188I TCNGA 7 cut(s) 78, 121, 187, 468, 663, 1096, 1150
Hpy188III TCNNGA 5 cut(s) 10, 221, 268, 815, 1204
Hpy8I GTNNAC 1 cut(s) 924
Hpy99I CGWCG 6 cut(s) 125, 164, 196, 199, 202, 214
HpyAV CCTTC 2 cut(s) 439, 577
HpyCH4III ACNGT 6 cut(s) 599, 709, 957, 992, 1196, 1214
HpyCH4IV ACGT 3 cut(s) 209, 245, 766
HpyCH4V TGCA 2 cut(s) 670, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 884, 1088
HpyF3I CTNAG 5 cut(s) 252, 318, 683, 824, 911
HpySE526I ACGT 3 cut(s) 209, 245, 766
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 100, 344, 410
Ksp22I TGATCA 3 cut(s) 45, 463, 1039
Kzo9I GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
LguI GCTCTTC 1 cut(s) 720
Lsp1109I GCAGC 6 cut(s) 177, 805, 865, 868, 871, 1094
LweI GCATC 5 cut(s) 355, 468, 532, 679, 896
MaeI CTAG 4 cut(s) 170, 719, 870, 1071
MaeII ACGT 3 cut(s) 209, 245, 766
MaeIII GTNAC 2 cut(s) 762, 992
MalI GATC 8 cut(s) 47, 266, 465, 470, 1041, 1105, 1152, 1171
MbiI CCGCTC 1 cut(s) 606
MboI GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
MflI RGATCY 2 cut(s) 1150, 1169
MhlI GDGCHC 3 cut(s) 378, 729, 788
MluCI AATT 5 cut(s) 459, 576, 818, 841, 1046
MlyI GAGTC 2 cut(s) 211, 1020
MmeI TCCRAC 2 cut(s) 117, 144
MseI TTAA 3 cut(s) 615, 1049, 1155
MspI CCGG 5 cut(s) 84, 238, 497, 585, 1129
MspR9I CCNGG 3 cut(s) 498, 1129, 1130
MwoI GCNNNNNNNGC 3 cut(s) 165, 884, 1088
NciI CCSGG 3 cut(s) 498, 1129, 1130
NdeI CATATG 1 cut(s) 1087
NdeII GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
NlaIII CATG 3 cut(s) 100, 344, 410
NlaIV GGNNCC 2 cut(s) 565, 1171
NmeAIII GCCGAG 2 cut(s) 283, 293
NmuCI GTSAC 2 cut(s) 762, 992
PaeR7I CTCGAG 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 138, 156, 206
PfeI GAWTC 3 cut(s) 60, 89, 634
PkrI GCNGC 6 cut(s) 167, 795, 880, 883, 886, 1084
PleI GAGTC 2 cut(s) 211, 1020
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 2 cut(s) 211, 1020
Ppu21I YACGTR 2 cut(s) 246, 767
PshBI ATTAAT 1 cut(s) 1049
PspCI CACGTG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 565, 1171
PspPI GGNCC 2 cut(s) 81, 563
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 2 cut(s) 1150, 1169
RsaI GTAC 3 cut(s) 227, 601, 874
RsaNI GTAC 3 cut(s) 226, 600, 873
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 615, 1049, 1155
SatI GCNGC 6 cut(s) 166, 794, 879, 882, 885, 1083
Sau3AI GATC 8 cut(s) 45, 264, 463, 468, 1039, 1103, 1150, 1169
Sau96I GGNCC 2 cut(s) 81, 563
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 2 cut(s) 211, 1020
ScrFI CCNGG 3 cut(s) 498, 1129, 1130
SduI GDGCHC 3 cut(s) 378, 729, 788
SetI ASST 8 cut(s) 212, 248, 275, 691, 769, 814, 1010, 1180
SfaNI GCATC 5 cut(s) 355, 468, 532, 679, 896
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 221
SmaI CCCGGG 1 cut(s) 1130
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 869
SrfI GCCCGGGC 1 cut(s) 1130
Sse9I AATT 5 cut(s) 459, 576, 818, 841, 1046
SsiI CCGC 1 cut(s) 604
SspMI CTAG 4 cut(s) 170, 719, 870, 1071
StyD4I CCNGG 3 cut(s) 496, 1127, 1128
StyI CCWWGG 2 cut(s) 638, 1174
TaaI ACNGT 6 cut(s) 599, 709, 957, 992, 1196, 1214
TaiI ACGT 3 cut(s) 212, 248, 769
TaqI TCGA 4 cut(s) 9, 222, 275, 693
TasI AATT 5 cut(s) 459, 576, 818, 841, 1046
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 3 cut(s) 60, 89, 634
Tru1I TTAA 3 cut(s) 615, 1049, 1155
Tru9I TTAA 3 cut(s) 615, 1049, 1155
TscAI CASTG 3 cut(s) 48, 687, 1171
TseFI GTSAC 2 cut(s) 762, 992
TseI GCWGC 6 cut(s) 165, 793, 878, 881, 884, 1082
Tsp45I GTSAC 2 cut(s) 762, 992
TspDTI ATGAA 7 cut(s) 113, 340, 504, 745, 848, 951, 1154
TspGWI ACGGA 3 cut(s) 215, 361, 1175
TspMI CCCGGG 1 cut(s) 1128
TspRI CASTG 3 cut(s) 48, 687, 1171
VpaK11BI GGWCC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 1049
XapI RAATTY 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 221
XmaI CCCGGG 1 cut(s) 1128
XspI CTAG 4 cut(s) 170, 719, 870, 1071
ZraI GACGTC 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.