Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

23133843 .. 23134863

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAACTTGAAAACAAAAATGGTGTACTAGCCATTTTTGAAAATATTGGATGTGAGTTCATTCAGTCTCGCCTTCACAACTTCAGGGGGACAGGGAAACCAGACCCAACTGTTTCTTCTAGTTTCTTCAATGAGATGAGAGTTTTCTGTGAAGACAATGGTAACAAGAACGTCTCCCATGCATCATCCCCAATGGCATCAAGGGGCATGAGTGAGAAGCCTGCGCGGAGGGGGATGTCATACTCTCAGCAACTGTCATCATCTGTATTGTCTGGGGCAGGCTTTGACACTCATTACTACCAGAGCTTGTTGAGAGGCAGAGGACTTCTCTTTGCTGATCAGCAATTGATGGCTAATGAGAGGACAGCCAGATTGATGTCTAACCTTAATGTTCTCACTGGATCTCAAGGTCAGGTCCGATTGGAATGCACTCTGCCAGTCTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

150

Amino Acids

16.43

Weight (kDa)

8.55

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	11, 41, 130
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	2 cut(s)	306, 447
AluI	AGCT	2 cut(s)	306, 447
Alw26I	GTCTC	3 cut(s)	72, 178, 445
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	159
BccI	CCATC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	72, 178, 445
BfaI	CTAG	4 cut(s)	29, 120, 444, 448
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmsI	GCATC	2 cut(s)	191, 206
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpuEI	CTTGAG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	403, 437
BseGI	GGATG	3 cut(s)	56, 185, 240
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	403, 437
Bsh1236I	CGCG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	3 cut(s)	72, 178, 445
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	337, 401
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	403, 437
BssMI	GATC	2 cut(s)	337, 401
Bst4CI	ACNGT	2 cut(s)	112, 255
BstC8I	GCNNGC	2 cut(s)	222, 280
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	56, 185, 240
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	340, 404
BstMAI	GTCTC	3 cut(s)	72, 178, 445
BstMBI	GATC	2 cut(s)	337, 401
BstUI	CGCG	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	56, 185, 240
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	222, 280
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	179, 208
CviJI	RGCY	7 cut(s)	32, 220, 282, 306, 353, 368, 447
CviKI_1	RGCY	7 cut(s)	32, 220, 282, 306, 353, 368, 447
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	339, 403
DpnII	GATC	2 cut(s)	337, 401
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	182, 211
FaiI	YATR	3 cut(s)	180, 209, 241
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	178, 207
FbaI	TGATCA	1 cut(s)	337
FokI	GGATG	3 cut(s)	63, 172, 247
FspBI	CTAG	4 cut(s)	29, 120, 444, 448
GlaI	GCGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	182, 211
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	112, 255
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	182, 429
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	182, 211
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 401
LweI	GCATC	2 cut(s)	191, 206
MaeI	CTAG	4 cut(s)	29, 120, 444, 448
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	339, 403
MboI	GATC	2 cut(s)	337, 401
MboII	GAAGA	3 cut(s)	108, 118, 164
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	1 cut(s)	344
MnlI	CCTC	4 cut(s)	222, 308, 314, 354
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	1 cut(s)	387
MunI	CAATTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	431
MvnI	CGCG	1 cut(s)	226
NdeII	GATC	2 cut(s)	337, 401
NlaIII	CATG	2 cut(s)	182, 211
NsiI	ATGCAT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	337, 401
Sau96I	GGNCC	1 cut(s)	415
SetI	ASST	6 cut(s)	174, 308, 387, 412, 417, 449
SfaNI	GCATC	2 cut(s)	191, 206
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	1 cut(s)	226
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	4 cut(s)	29, 120, 444, 448
TaaI	ACNGT	2 cut(s)	112, 255
TaiI	ACGT	1 cut(s)	174
TasI	AATT	1 cut(s)	344
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	415
XspI	CTAG	4 cut(s)	29, 120, 444, 448
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.