Rroxscaffold_1G00054240

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001171
Physical Location & Seq
Reverse (-)
75630971 .. 75632933
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054240.1

Sequence Viewer

Length: 1035 bp
ATGTTGGGCACAGTGAAGGCGCGTTGGGTGTTAGCGACGGTGGTGTTTTTCTCAGTGGTGGTTTCGCGGAGCAAACCGAGAGTTGTGTCGGGGAATCTGGAGTACGATTTCTATCGGAACTCGTGTCCTCAGGCAGAGACCCTTGTGAGGTCCAAGATGGCTTGGATTCACGGCCAGCACAGGAACGTCTCGGCCCAGTTTCTGCGTCTATTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCATCCGTTCTCTTGGATGACAGCAATGGGGATAAAAACCGTTCTATAGAGAAGCAGGCTACACCAAATAGGTCCTTAAAGGGATTTGATAAAATTGATCAGATCAAGGAGGAGCTCGAAAATGTTTGTCCAGGGGTGGTATCTTGTGCCGATATACTTGTTCTTGCCGCCAGAGATGGCATTATCCTGGCTGGTGGCCCATACTATCCAGTTTTGACAGGTAGAAGAGATAGTACTCAGTCCTACTTTGATGTGGCATTGGAGGAGATTCCAAAACCTGATGACAATATCACTCGTATATTGCATCTGTTCTCAAGTAGAGGTTTCAGTGAGAGAGAAACAGTTGCTCTTCTTGGAGCGCACAACATTGGAAAGATAGGATGTGAGTTCATACAGTCGCGCGTAAACAACTTCACTGGGACAGGGCAACCTGACCCAGCCTTACCTCTTGATCTCCTCAATACGATGAAACTAAAATGCCAAGACAATGCTAACAGGGCTACCAGTAATACTGATGCATCTCAATCGTCTTTGTCCATATCATCTGGGGCAGTTTTTGACTCTCACTATTACCAGAACTTGTTGCGGGGAAGAGGAATCCTCTTTGCTGATCAGCAATTAATGTCTAATAGGATGACAGCTCAAGTGGTCGCAGCATTTGCTTCAGATAATGGATCGGCATTTCGGCTGGACTTTTCCCAGGCAATGACGAAGATGTCAACACTTGGTGTCCTCACTGGATCCCAAGGTCAGGTGCGATCGGTCTGTTCTCTCCCAGTCAATAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

344

Amino Acids

37.81

Weight (kDa)

7.58

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 304 1.9e-72 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 958
AccII CGCG 4 cut(s) 22, 67, 643, 645
AciI CCGC 3 cut(s) 67, 411, 829
AclWI GGATC 3 cut(s) 925, 978, 991
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 891
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 2 cut(s) 104, 478
AfiI CCNNNNNNNGG 2 cut(s) 147, 994
AjnI CCWGG 3 cut(s) 373, 429, 942
AluBI AGCT 2 cut(s) 358, 884
AluI AGCT 2 cut(s) 358, 884
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 131, 193
AlwI GGATC 3 cut(s) 925, 978, 991
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 3 cut(s) 172, 192, 439
ApeKI GCWGC 1 cut(s) 896
AseI ATTAAT 1 cut(s) 863
AspLEI GCGC 3 cut(s) 22, 604, 645
AspS9I GGNCC 4 cut(s) 150, 193, 315, 440
AvaII GGWCC 2 cut(s) 150, 315
AxyI CCTNAGG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 983
BanII GRGCYC 1 cut(s) 360
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BauI CACGAG 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 908
BccI CCATC 2 cut(s) 151, 413
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 750, 784
BciT130I CCWGG 3 cut(s) 375, 431, 944
BclI TGATCA 2 cut(s) 340, 853
BcoDI GTCTC 2 cut(s) 131, 193
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 411, 897
BlsI GCNGC 2 cut(s) 412, 898
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 375, 431, 944
Bme18I GGWCC 2 cut(s) 150, 315
BmgT120I GGNCC 4 cut(s) 150, 193, 315, 440
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 3 cut(s) 375, 431, 944
BmrI ACTGGG 3 cut(s) 190, 669, 1013
BmsI GCATC 5 cut(s) 232, 254, 556, 748, 770
BmuI ACTGGG 3 cut(s) 190, 669, 1013
BplI GAGNNNNNCTC 2 cut(s) 828, 860
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 541, 870
BsaBI GATNNNNATC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 374, 942, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 994
Bse1I ACTGG 6 cut(s) 196, 452, 664, 747, 985, 1019
Bse21I CCTNAGG 1 cut(s) 129
Bse3DI GCAATG 2 cut(s) 274, 954
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 3 cut(s) 375, 431, 944
BseDI CCNNGG 3 cut(s) 374, 942, 988
BseGI GGATG 4 cut(s) 245, 265, 629, 882
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 147, 994
BseMI GCAATG 2 cut(s) 274, 954
BseMII CTCAG 3 cut(s) 66, 143, 494
BseNI ACTGG 6 cut(s) 196, 452, 664, 747, 985, 1019
BseRI GAGGAG 3 cut(s) 368, 521, 689
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 908
BseYI CCCAGC 1 cut(s) 679
Bsh1236I CGCG 4 cut(s) 22, 67, 643, 645
Bsh1285I CGRYCG 1 cut(s) 1004
BshFI GGCC 3 cut(s) 174, 194, 441
BsiEI CGRYCG 1 cut(s) 1004
BsiHKAI GWGCWC 1 cut(s) 360
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 147, 994
BsmAI GTCTC 2 cut(s) 131, 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 3 cut(s) 174, 194, 441
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 11, 360
Bsp143I GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
BspACI CCGC 3 cut(s) 67, 411, 829
BspANI GGCC 3 cut(s) 174, 194, 441
BspCNI CTCAG 3 cut(s) 65, 142, 493
BspFNI CGCG 4 cut(s) 22, 67, 643, 645
BspLI GGNNCC 1 cut(s) 985
BspPI GGATC 3 cut(s) 925, 978, 991
BspQI GCTCTTC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 274, 954
BsrI ACTGG 6 cut(s) 196, 452, 664, 747, 985, 1019
BssECI CCNNGG 3 cut(s) 374, 942, 988
BssMI GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
BssSI CACGAG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 988
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 375, 431, 944
Bst4CI ACNGT 5 cut(s) 13, 40, 284, 586, 639
Bst6I CTCTTC 3 cut(s) 463, 597, 829
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 2 cut(s) 176, 300
BstDEI CTNAG 3 cut(s) 52, 129, 480
BstF5I GGATG 4 cut(s) 245, 265, 629, 882
BstFNI CGCG 4 cut(s) 22, 67, 643, 645
BstHHI GCGC 3 cut(s) 22, 604, 645
BstKTI GATC 7 cut(s) 343, 348, 697, 856, 920, 986, 1004
BstMAI GTCTC 2 cut(s) 131, 193
BstMBI GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
BstMCI CGRYCG 1 cut(s) 1004
BstMWI GCNNNNNNNGC 2 cut(s) 740, 902
BstNI CCWGG 3 cut(s) 375, 431, 944
BstSCI CCNGG 3 cut(s) 373, 429, 942
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 4 cut(s) 22, 67, 643, 645
BstV1I GCAGC 1 cut(s) 908
BstX2I RGATCY 1 cut(s) 983
BstYI RGATCY 1 cut(s) 983
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 3 cut(s) 174, 194, 441
BtsCI GGATG 4 cut(s) 245, 265, 629, 882
BtsIMutI CAGTG 5 cut(s) 18, 60, 577, 657, 978
Cac8I GCNNGC 2 cut(s) 176, 300
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 3 cut(s) 22, 604, 645
Cfr13I GGNCC 4 cut(s) 150, 193, 315, 440
CseI GACGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 103, 477
CviAII CATG 1 cut(s) 218
CviQI GTAC 2 cut(s) 103, 477
DdeI CTNAG 3 cut(s) 52, 129, 480
DpnI GATC 7 cut(s) 342, 347, 696, 855, 919, 985, 1003
DpnII GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
DraIII CACNNNGTG 1 cut(s) 971
DrdI GACNNNNNNGTC 1 cut(s) 958
DseDI GACNNNNNNGTC 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 3 cut(s) 463, 597, 829
EarI CTCTTC 3 cut(s) 463, 597, 829
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 150, 315
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 891
Eco81I CCTNAGG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 3 cut(s) 373, 429, 942
EcoT14I CCWWGG 1 cut(s) 988
EcoT22I ATGCAT 2 cut(s) 247, 763
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 988
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 1 cut(s) 221
FaiI YATR 7 cut(s) 219, 290, 398, 445, 542, 635, 782
FaqI GGGAC 1 cut(s) 676
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 822
FbaI TGATCA 2 cut(s) 340, 853
Fnu4HI GCNGC 2 cut(s) 411, 897
FokI GGATG 4 cut(s) 232, 272, 636, 889
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 411, 897
GlaI GCGC 3 cut(s) 21, 603, 644
GluI GCNGC 2 cut(s) 411, 897
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 3 cut(s) 174, 194, 441
HgaI GACGC 1 cut(s) 194
HhaI GCGC 3 cut(s) 22, 604, 645
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 3 cut(s) 20, 602, 643
HinP1I GCGC 3 cut(s) 20, 602, 643
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HinfI GANTC 5 cut(s) 94, 166, 511, 803, 840
Hpy166II GTNNAC 2 cut(s) 649, 963
Hpy188I TCNGA 3 cut(s) 117, 345, 910
Hpy188III TCNNGA 2 cut(s) 98, 692
Hpy8I GTNNAC 2 cut(s) 649, 963
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 5 cut(s) 13, 40, 284, 586, 639
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 245, 547, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 902
HpyF3I CTNAG 3 cut(s) 52, 129, 480
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 3 cut(s) 20, 602, 643
Ksp22I TGATCA 2 cut(s) 340, 853
Kzo9I GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 3 cut(s) 69, 355, 599
Lsp1109I GCAGC 1 cut(s) 908
LweI GCATC 5 cut(s) 232, 254, 556, 748, 770
MaeII ACGT 1 cut(s) 186
MalI GATC 7 cut(s) 342, 347, 696, 855, 919, 985, 1003
MboI GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
MboII GAAGA 4 cut(s) 480, 584, 846, 967
MflI RGATCY 1 cut(s) 983
MhlI GDGCHC 2 cut(s) 11, 360
MluCI AATT 2 cut(s) 336, 860
MlyI GAGTC 1 cut(s) 797
Mph1103I ATGCAT 2 cut(s) 247, 763
MseI TTAA 3 cut(s) 320, 863, 1033
MspR9I CCNGG 3 cut(s) 375, 431, 944
MvaI CCWGG 3 cut(s) 375, 431, 944
MvnI CGCG 4 cut(s) 22, 67, 643, 645
MwoI GCNNNNNNNGC 2 cut(s) 740, 902
NdeII GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 985
NmeAIII GCCGAG 1 cut(s) 170
NsiI ATGCAT 2 cut(s) 247, 763
PciSI GCTCTTC 1 cut(s) 597
PfeI GAWTC 4 cut(s) 94, 166, 511, 840
PkrI GCNGC 2 cut(s) 412, 898
Ple19I CGATCG 1 cut(s) 1004
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PpuMI RGGWCCY 1 cut(s) 315
PshBI ATTAAT 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 3 cut(s) 373, 429, 942
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 3 cut(s) 373, 429, 942
PspN4I GGNNCC 1 cut(s) 985
PspPI GGNCC 4 cut(s) 150, 193, 315, 440
PspPPI RGGWCCY 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 983
PvuI CGATCG 1 cut(s) 1004
RsaI GTAC 2 cut(s) 104, 478
RsaNI GTAC 2 cut(s) 103, 477
SacI GAGCTC 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 3 cut(s) 320, 863, 1033
SatI GCNGC 2 cut(s) 411, 897
Sau3AI GATC 7 cut(s) 340, 345, 694, 853, 917, 983, 1001
Sau96I GGNCC 4 cut(s) 150, 193, 315, 440
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 375, 431, 944
SduI GDGCHC 2 cut(s) 11, 360
SfaNI GCATC 5 cut(s) 232, 254, 556, 748, 770
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 2 cut(s) 150, 315
SmlI CTYRAG 2 cut(s) 556, 885
SmoI CTYRAG 2 cut(s) 556, 885
Sse9I AATT 2 cut(s) 336, 860
SsiI CCGC 3 cut(s) 67, 411, 829
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 373, 429, 942
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 5 cut(s) 13, 40, 284, 586, 639
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 360
TaqII GACCGA 1 cut(s) 994
TasI AATT 2 cut(s) 336, 860
TatI WGTACW 1 cut(s) 476
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 4 cut(s) 94, 166, 511, 840
Tru1I TTAA 3 cut(s) 320, 863, 1033
Tru9I TTAA 3 cut(s) 320, 863, 1033
TscAI CASTG 5 cut(s) 18, 60, 577, 664, 985
TseI GCWGC 1 cut(s) 896
TspDTI ATGAA 3 cut(s) 217, 622, 725
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 5 cut(s) 18, 60, 577, 664, 985
VpaK11BI GGWCC 2 cut(s) 150, 315
VspI ATTAAT 1 cut(s) 863
ZrmI AGTACT 1 cut(s) 478
Zsp2I ATGCAT 2 cut(s) 247, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.