RLG00000032858

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001171
Physical Location & Seq
Reverse (-)
20046780 .. 20047412
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032858

Sequence Viewer

Length: 555 bp
ATGTCCTACTTTGATGTGGCATTGGAGGAGATTCCAAAACCTGATGACAATATCACTCATATATTGCATCTGTTCTCAAGTAGAGGTTTCAGTGAGAGAGAAACAGTTGCTCTTCTAGGAGCGCACAACATTGGAAAGATAGGATGTGAGTTCATACAGTCACGCGTAAACAACTTCACTGGGACAGGGCAGCCAGACCCAGCCTTACCTCTTGATCTCCTCAATACGATGAAACTAAAATGCCAAGACAATGCTAACAGGGCGACCAGTAATACTGATGCATCTCAATCGTCTTTGTCCATATCATCTGGGGCAGTTTTTGACTCTCACTATTACCAGAACTTGTTGCGGGGAAGAGGAATCCTCTTTGCTGATCAGCAATTGATGGCTAATAGGATGACAGCTCAAGTGGTCGCAGCATTTGCTTCAGATAATGGATCGGCATTTCGAATGGACTTTGCCCAGGCAATGACGAAGATGTCAACACTTGGTGTCCTCACTGGATCTCAAGGTCAGGTGCGATCGGTGTGTTCTCTCCCAGTCAATAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

185

Amino Acids

19.98

Weight (kDa)

6.04

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 9 - 144 1.6e-27 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
AccII CGCG 1 cut(s) 165
AciI CCGC 1 cut(s) 349
AclWI GGATC 2 cut(s) 445, 511
AcuI CTGAAG 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 163
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
AlwI GGATC 2 cut(s) 445, 511
ApeKI GCWGC 2 cut(s) 190, 416
AspLEI GCGC 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 448
BbvI GCAGC 2 cut(s) 202, 428
BccI CCATC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 1 cut(s) 464
BclI TGATCA 1 cut(s) 373
BfaI CTAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 191, 417
BlsI GCNGC 2 cut(s) 192, 418
Bme1390I CCNGG 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 464
BmrI ACTGGG 2 cut(s) 189, 533
BmsI GCATC 3 cut(s) 76, 268, 290
BmuI ACTGGG 2 cut(s) 189, 533
BplI GAGNNNNNCTC 2 cut(s) 348, 380
Bpu14I TTCGAA 1 cut(s) 448
BpuEI CTTGAG 3 cut(s) 61, 390, 492
BsaJI CCNNGG 1 cut(s) 462
Bse1I ACTGG 4 cut(s) 184, 267, 505, 539
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 149, 402
BseMI GCAATG 1 cut(s) 474
BseNI ACTGG 4 cut(s) 184, 267, 505, 539
BseRI GAGGAG 2 cut(s) 41, 209
BseXI GCAGC 2 cut(s) 202, 428
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 524
BsiEI CGRYCG 1 cut(s) 524
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 448
Bsp143I GATC 5 cut(s) 214, 373, 437, 503, 521
BspACI CCGC 1 cut(s) 349
BspFNI CGCG 1 cut(s) 165
BspPI GGATC 2 cut(s) 445, 511
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 4 cut(s) 184, 267, 505, 539
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 5 cut(s) 214, 373, 437, 503, 521
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 106, 159
Bst6I CTCTTC 2 cut(s) 117, 349
BstAPI GCANNNNNTGC 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 448
BstF5I GGATG 2 cut(s) 149, 402
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 5 cut(s) 217, 376, 440, 506, 524
BstMBI GATC 5 cut(s) 214, 373, 437, 503, 521
BstMCI CGRYCG 1 cut(s) 524
BstMWI GCNNNNNNNGC 2 cut(s) 260, 422
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 462
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 202, 428
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BtsCI GGATG 2 cut(s) 149, 402
BtsIMutI CAGTG 3 cut(s) 97, 177, 498
CfoI GCGC 1 cut(s) 124
CviJI RGCY 4 cut(s) 193, 203, 389, 404
CviKI_1 RGCY 4 cut(s) 193, 203, 389, 404
DpnI GATC 5 cut(s) 216, 375, 439, 505, 523
DpnII GATC 5 cut(s) 214, 373, 437, 503, 521
DraIII CACNNNGTG 1 cut(s) 491
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 117, 349
EarI CTCTTC 2 cut(s) 117, 349
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 462
EcoT22I ATGCAT 1 cut(s) 283
FaiI YATR 4 cut(s) 60, 62, 155, 302
FaqI GGGAC 1 cut(s) 196
FauI CCCGC 1 cut(s) 342
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 191, 417
FokI GGATG 2 cut(s) 156, 409
Fsp4HI GCNGC 2 cut(s) 191, 417
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 123
GluI GCNGC 2 cut(s) 191, 417
GsaI CCCAGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 124
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 3 cut(s) 31, 323, 360
Hpy166II GTNNAC 2 cut(s) 169, 483
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 169, 483
HpyCH4III ACNGT 2 cut(s) 106, 159
HpyCH4V TGCA 2 cut(s) 67, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 422
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 5 cut(s) 214, 373, 437, 503, 521
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 202, 428
LweI GCATC 3 cut(s) 76, 268, 290
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 159
MalI GATC 5 cut(s) 216, 375, 439, 505, 523
MboI GATC 5 cut(s) 214, 373, 437, 503, 521
MboII GAAGA 3 cut(s) 104, 366, 487
MfeI CAATTG 1 cut(s) 380
MflI RGATCY 1 cut(s) 503
MluCI AATT 1 cut(s) 380
MluI ACGCGT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 19, 77, 219, 230, 350, 374, 506
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 1 cut(s) 553
MspR9I CCNGG 1 cut(s) 464
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 260, 422
NdeII GATC 5 cut(s) 214, 373, 437, 503, 521
NmuCI GTSAC 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 283
NspV TTCGAA 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 31, 360
PkrI GCNGC 2 cut(s) 192, 418
Ple19I CGATCG 1 cut(s) 524
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 462
PsuI RGATCY 1 cut(s) 503
PvuI CGATCG 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 553
SatI GCNGC 2 cut(s) 191, 417
Sau3AI GATC 5 cut(s) 214, 373, 437, 503, 521
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 464
SetI ASST 6 cut(s) 43, 88, 211, 406, 514, 519
SfaNI GCATC 3 cut(s) 76, 268, 290
SfuI TTCGAA 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 76, 405, 507
SmoI CTYRAG 3 cut(s) 76, 405, 507
Sse9I AATT 1 cut(s) 380
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 106, 159
TaqI TCGA 1 cut(s) 448
TasI AATT 1 cut(s) 380
TfiI GAWTC 2 cut(s) 31, 360
Tru1I TTAA 1 cut(s) 553
Tru9I TTAA 1 cut(s) 553
TscAI CASTG 3 cut(s) 97, 184, 505
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 2 cut(s) 190, 416
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 142, 245
TspRI CASTG 3 cut(s) 97, 184, 505
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.