Rorug02G0089100

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001171
Physical Location & Seq
Forward (+)
7117937 .. 7118805
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0089100.1

Sequence Viewer

Length: 621 bp
ATGTTGGTGCCTCACAGGTTTCAGCCCTTTTCCAAAGCTTTTGAAGGGTTGGAGGATTTGAATGTTGGAGATTTGATTGATCAGGAGGAGAAGGTCTGGAATGTACCATTACTTTCAGAGTTTTTTACTCAAGTGGAGGTGGCTTCGATCGCTAGTATCCCCCTGAATCTAAGGGAATCAGTGGACAGACATGTGTGGCATTATGACAAGAAGGCGGTGTATTCTGTCCGAAGTGGTTACTATGTGTTGCGTGATGCAAAAACAAGGGATAAGCGAGCCTCTACCTCCAGCGCTATGCATGGAGGAGTAATGATATATGGGTGCGTACTGGAACAAGGTGTGGAAAGCTACGGTGCCCCCCAAGTTTTTGTGGCTCAGTGGGTGGTTCAGTATCTGAATGAGTTCAAGAAACACAGGTACAAGCCTGGGTCGAAGCAGCGGAGACCAGTGATGAAGTGGGAGTGCCCACCCAGTGGGAGACTGAAAATCAATATCGATGGGGCTTTTAATCCTACAAGTGGTTCTGGTGGCATTGGGGTGGTGGTTAGAAACGAAGAAGGTTTGGGAGTTGCCGTTTTAGCGAGGCCGTTTGCACATATGCTCACTCCACTTTATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

9.02

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 353
AccB7I CCANNNNNTGG 1 cut(s) 473
AciI CCGC 2 cut(s) 215, 439
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 3 cut(s) 105, 327, 419
AfeI AGCGCT 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 473, 518
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 44, 61, 406
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 2 cut(s) 38, 348
AluI AGCT 2 cut(s) 38, 348
Alw26I GTCTC 2 cut(s) 436, 472
AlwNI CAGNNNCTG 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 292
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 293
BaeGI GKGCMC 2 cut(s) 358, 467
BanI GGYRCC 2 cut(s) 7, 353
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 557, 571
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 167
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 436, 472
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 294
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 2 cut(s) 9, 355
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 518
Bse1I ACTGG 3 cut(s) 333, 446, 471
BseBI CCWGG 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 473, 518
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 3 cut(s) 333, 446, 471
BseRI GAGGAG 2 cut(s) 101, 318
BseSI GKGCMC 2 cut(s) 358, 467
BseXI GCAGC 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 586
BshNI GGYRCC 2 cut(s) 7, 353
BshVI ATCGAT 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 473, 518
BsmAI GTCTC 2 cut(s) 436, 472
BsnI GGCC 1 cut(s) 586
Bso31I GGTCTC 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 358, 467
Bsp143I GATC 2 cut(s) 79, 147
BspACI CCGC 2 cut(s) 215, 439
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 2 cut(s) 9, 355
BspT107I GGYRCC 2 cut(s) 7, 353
BspTNI GGTCTC 1 cut(s) 436
BsrI ACTGG 3 cut(s) 333, 446, 471
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 79, 147
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 170, 375
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 82, 150
BstMAI GTCTC 2 cut(s) 436, 472
BstMBI GATC 2 cut(s) 79, 147
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 149, 578
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 424
BstSLI GKGCMC 2 cut(s) 358, 467
BstV1I GCAGC 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 495
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 586
BsuTUI ATCGAT 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 186, 383, 453, 478
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 394
CfoI GCGC 1 cut(s) 293
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 3 cut(s) 104, 326, 418
CviAII CATG 2 cut(s) 191, 299
CviJI RGCY 9 cut(s) 25, 38, 143, 278, 348, 374, 424, 503, 586
CviKI_1 RGCY 9 cut(s) 25, 38, 143, 278, 348, 374, 424, 503, 586
CviQI GTAC 3 cut(s) 104, 326, 418
DdeI CTNAG 2 cut(s) 170, 375
DpnI GATC 2 cut(s) 81, 149
DpnII GATC 2 cut(s) 79, 147
DraIII CACNNNGTG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 436
Eco47III AGCGCT 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 300
FaeI CATG 2 cut(s) 194, 302
FatI CATG 2 cut(s) 190, 298
FauNDI CATATG 1 cut(s) 597
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 437
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 586
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 194, 302
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 166, 176
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 118, 230, 396
Hpy188III TCNNGA 3 cut(s) 83, 97, 406
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 4 cut(s) 38, 85, 205, 551
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 257, 298, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 578
HpyF3I CTNAG 2 cut(s) 170, 375
Hsp92II CATG 2 cut(s) 194, 302
HspAI GCGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 147
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 81, 149
MboI GATC 2 cut(s) 79, 147
MboII GAAGA 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 358, 467
MmeI TCCRAC 2 cut(s) 30, 46
MnlI CCTC 8 cut(s) 21, 46, 79, 130, 289, 295, 296, 576
Mph1103I ATGCAT 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 149, 578
NdeI CATATG 1 cut(s) 597
NdeII GATC 2 cut(s) 79, 147
NlaIII CATG 2 cut(s) 194, 302
NlaIV GGNNCC 2 cut(s) 9, 355
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 194
PciI ACATGT 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 166, 176
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 1 cut(s) 438
Ple19I CGATCG 1 cut(s) 150
PscI ACATGT 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 9, 355
PstNI CAGNNNCTG 1 cut(s) 394
PvuI CGATCG 1 cut(s) 150
RsaI GTAC 3 cut(s) 105, 327, 419
RsaNI GTAC 3 cut(s) 104, 326, 418
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 2 cut(s) 79, 147
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 358, 467
SetI ASST 9 cut(s) 20, 40, 96, 141, 287, 340, 350, 419, 562
SfaNI GCATC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 2 cut(s) 215, 439
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 3 cut(s) 146, 431, 495
TfiI GAWTC 2 cut(s) 166, 176
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 4 cut(s) 186, 383, 453, 478
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 4 cut(s) 186, 383, 453, 478
Van91I CCANNNNNTGG 1 cut(s) 473
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.