Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Forward (+)

23128662 .. 23131489

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGATGAGTGCAATGAAAGGGTGGGCCTTTGCTCTGGTGGTGATCTTCTCTGTGCTTCTGTCATGGAGCATCCCAAGAGGCGAGTCAGAGAGAGCCTTTCTCTCTTTCTCCTCCCATGAACCACTGGTCAAAGTGGTTTCTCTGGCGTCTGCGGATGGAGGCCAAGATTTCTTCATGGAGATGACAGATTCTGCTGCAACGAACATCGAGTATGATTTCTACCGCGATACATGCCCTGAAGCTGAGACCATTGTGAGGTCTACGATGGCTCAGATTTACTCCCAGCACAAGAATGTCTCTGCTCAGCTTCTGCGCCTCTTTTTCCATGATTGCTTCATTCAGGGTTGTGATGCTTCTGTCCTCTTGGATCACAGCAATGGGAATAAAAACCATTCCGTAGAGAAGCAGGCTGTGCCAAATAAGAGCTTGAAGGGATTTGATAAAATTGATCAGATCAAGGAGGTGCTCGAAAATGTTTGTCCTGCAGTCGTATCTTGTGCTGACATACTTGCTCTTGCCACTAGAGATGGCGTTGTTCTGGCTGGTGGTCCCTTTTATCCACTTTTCACTGGTAGAAGAGATAGTGCCCGCTCCTATTATGATGAAGCCATGGCTGAGATTCCAAAACCTGATGATAATATCACTCAGACACTTCATCTGTTCTCACTCAGAGGTTTTACTGACAGAGAAACCGTCAGTCTTCTAGGAGGGCACAACATTGGGAAGATTGGATGTGAGTTCATTCAGTCTCGCCTTCACAACTTCAAGGGGACAAGGAAACCAGACCCAACTGTTTCTCCTAGTTTCCTCAATGAGATGAGAGTTTTCTGTGAAGACAATGGTAACGAGAAGAGTAGCCAAGGATCACCCATGGCAGCTAACATGGCGTCTCCCATGGCATTCCCCACGACAGGCCCCATGGCAGCACCCATGGCATCATCCCCAATGGCATCAAGGGGCATGAATGAGAAGCCTGCGCCGAGGGGGATGCCATACTTTCAGCAACTGTCATCATCTGTATCGTCTGGGGCAGGCTTTGACACTCATTACTACCAGAGCTTGTTGAGAGGCAGAGGACTTCTCTTTGCTGATCAGCAATTGATGGCTAATGAGAGGACAGCCAGATTGGTGAGAGCTTATGCTTCAGACGATGGATCAACCTTCCGGATGGACTTTGCCCGGGCAATGATGAAGATGTCTAACCTTAATGCACTCACTGGATCTCAAGGTCAGGTCCGATTAGAATGCACTCTAGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

421

Amino Acids

46.08

Weight (kDa)

6.16

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	1164
AciI	CCGC	3 cut(s)	152, 223, 589
AclWI	GGATC	4 cut(s)	375, 871, 1162, 1228
AcuI	CTGAAG	2 cut(s)	258, 1128
AcyI	GRCGYC	2 cut(s)	146, 887
AfiI	CCNNNNNNNGG	2 cut(s)	255, 911
AgsI	TTSAA	2 cut(s)	430, 766
AluBI	AGCT	7 cut(s)	242, 307, 426, 878, 1059, 1136, 1256
AluI	AGCT	7 cut(s)	242, 307, 426, 878, 1059, 1136, 1256
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	4 cut(s)	239, 301, 753, 894
AlwI	GGATC	4 cut(s)	375, 871, 1162, 1228
AlwNI	CAGNNNCTG	3 cut(s)	191, 310, 1006
Ama87I	CYCGRG	1 cut(s)	1179
Aor13HI	TCCGGA	1 cut(s)	1164
AoxI	GGCC	3 cut(s)	24, 160, 913
ApeKI	GCWGC	3 cut(s)	194, 875, 923
AspLEI	GCGC	2 cut(s)	315, 979
AspS9I	GGNCC	4 cut(s)	24, 548, 914, 1234
AsuC2I	CCSGG	2 cut(s)	1180, 1181
AsuHPI	GGTGA	3 cut(s)	52, 858, 1141
AvaI	CYCGRG	1 cut(s)	1179
AvaII	GGWCC	2 cut(s)	548, 1234
BaeGI	GKGCMC	2 cut(s)	589, 714
BbsI	GAAGAC	2 cut(s)	692, 840
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	181, 887, 935
BccI	CCATC	6 cut(s)	149, 259, 521, 1096, 1145, 1162
BcgI	CGANNNNNNTGC	4 cut(s)	970, 1004, 1227, 1261
BclI	TGATCA	2 cut(s)	448, 1090
BcnI	CCSGG	2 cut(s)	1180, 1181
BcoDI	GTCTC	4 cut(s)	239, 301, 753, 894
BfaI	CTAG	5 cut(s)	522, 704, 801, 1253, 1261
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	3 cut(s)	195, 876, 924
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	196, 877, 925
Bme1390I	CCNGG	2 cut(s)	1180, 1181
Bme18I	GGWCC	2 cut(s)	548, 1234
BmeT110I	CYCGRG	1 cut(s)	1179
BmgT120I	GGNCC	4 cut(s)	24, 548, 914, 1234
BmiI	GGNNCC	2 cut(s)	550, 916
BmrFI	CCNGG	2 cut(s)	1180, 1181
BmsI	GCATC	5 cut(s)	78, 340, 944, 959, 978
BpiI	GAAGAC	2 cut(s)	692, 840
BplI	GAGNNNNNCTC	4 cut(s)	84, 116, 1065, 1097
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	1209
BpuMI	CCSGG	2 cut(s)	1180, 1181
BsaHI	GRCGYC	2 cut(s)	146, 887
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	8 cut(s)	609, 859, 870, 894, 918, 930, 980, 1179
BsaWI	WCCGGW	1 cut(s)	1164
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 911
Bse1I	ACTGG	3 cut(s)	129, 574, 1222
Bse3DI	GCAATG	3 cut(s)	18, 382, 1191
BseAI	TCCGGA	1 cut(s)	1164
BseDI	CCNNGG	8 cut(s)	609, 859, 870, 894, 918, 930, 980, 1179
BseGI	GGATG	6 cut(s)	69, 160, 737, 938, 993, 1173
BseLI	CCNNNNNNNGG	2 cut(s)	255, 911
BseMI	GCAATG	3 cut(s)	18, 382, 1191
BseMII	CTCAG	6 cut(s)	234, 284, 317, 606, 659, 682
BseNI	ACTGG	3 cut(s)	129, 574, 1222
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	2 cut(s)	589, 714
BseXI	GCAGC	3 cut(s)	181, 887, 935
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	26, 162, 915
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	1179
BsiSI	CCGG	2 cut(s)	1165, 1180
BslFI	GGGAC	2 cut(s)	534, 784
BslI	CCNNNNNNNGG	2 cut(s)	255, 911
BsmAI	GTCTC	4 cut(s)	239, 301, 753, 894
BsmBI	CGTCTC	1 cut(s)	894
BsmFI	GGGAC	2 cut(s)	534, 784
BsmI	GAATGC	2 cut(s)	899, 1250
BsnI	GGCC	3 cut(s)	26, 162, 915
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	1179
Bsp1286I	GDGCHC	3 cut(s)	468, 589, 714
Bsp13I	TCCGGA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	5 cut(s)	609, 870, 894, 918, 930
BspACI	CCGC	3 cut(s)	152, 223, 589
BspANI	GGCC	3 cut(s)	26, 162, 915
BspCNI	CTCAG	6 cut(s)	235, 283, 316, 607, 658, 681
BspEI	TCCGGA	1 cut(s)	1164
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	550, 916
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	4 cut(s)	375, 871, 1162, 1228
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	591
BsrDI	GCAATG	3 cut(s)	18, 382, 1191
BsrI	ACTGG	3 cut(s)	129, 574, 1222
BssECI	CCNNGG	8 cut(s)	609, 859, 870, 894, 918, 930, 980, 1179
BssMI	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
BssNI	GRCGYC	2 cut(s)	146, 887
BssT1I	CCWWGG	6 cut(s)	609, 859, 870, 894, 918, 930
Bst4CI	ACNGT	3 cut(s)	694, 793, 1008
Bst6I	CTCTTC	2 cut(s)	571, 845
BstACI	GRCGYC	2 cut(s)	146, 887
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	5 cut(s)	408, 589, 975, 1033, 1258
BstDEI	CTNAG	6 cut(s)	243, 270, 303, 615, 645, 668
BstDSI	CCRYGG	5 cut(s)	609, 870, 894, 918, 930
BstF5I	GGATG	6 cut(s)	69, 160, 737, 938, 993, 1173
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	315, 979
BstKTI	GATC	8 cut(s)	45, 370, 451, 456, 866, 1093, 1157, 1223
BstMAI	GTCTC	4 cut(s)	239, 301, 753, 894
BstMBI	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 412, 884, 932
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	1178, 1179
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	2 cut(s)	589, 714
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	181, 887, 935
BstV2I	GAAGAC	2 cut(s)	692, 840
BstX2I	RGATCY	1 cut(s)	1220
BstYI	RGATCY	1 cut(s)	1220
BsuRI	GGCC	3 cut(s)	26, 162, 915
BtgI	CCRYGG	5 cut(s)	609, 870, 894, 918, 930
BtsCI	GGATG	6 cut(s)	69, 160, 737, 938, 993, 1173
BtsIMutI	CAGTG	3 cut(s)	122, 567, 1215
Cac8I	GCNNGC	5 cut(s)	408, 589, 975, 1033, 1258
CaiI	CAGNNNCTG	3 cut(s)	191, 310, 1006
CfoI	GCGC	2 cut(s)	315, 979
Cfr13I	GGNCC	4 cut(s)	24, 548, 914, 1234
Cfr9I	CCCGGG	1 cut(s)	1179
CseI	GACGC	2 cut(s)	135, 876
DdeI	CTNAG	6 cut(s)	243, 270, 303, 615, 645, 668
DpnI	GATC	8 cut(s)	44, 369, 450, 455, 865, 1092, 1156, 1222
DpnII	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
Eam1104I	CTCTTC	2 cut(s)	571, 845
EarI	CTCTTC	2 cut(s)	571, 845
Eco130I	CCWWGG	6 cut(s)	609, 859, 870, 894, 918, 930
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	548, 1234
Eco57I	CTGAAG	2 cut(s)	258, 1128
Eco88I	CYCGRG	1 cut(s)	1179
EcoO109I	RGGNCCY	1 cut(s)	914
EcoT14I	CCWWGG	6 cut(s)	609, 859, 870, 894, 918, 930
ErhI	CCWWGG	6 cut(s)	609, 859, 870, 894, 918, 930
Esp3I	CGTCTC	1 cut(s)	894
FaqI	GGGAC	2 cut(s)	534, 784
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	2 cut(s)	448, 1090
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	195, 876, 924
FokI	GGATG	6 cut(s)	56, 167, 744, 925, 1000, 1180
Fsp4HI	GCNGC	3 cut(s)	195, 876, 924
FspBI	CTAG	5 cut(s)	522, 704, 801, 1253, 1261
GlaI	GCGC	2 cut(s)	314, 978
GluI	GCNGC	3 cut(s)	195, 876, 924
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	26, 162, 915
HapII	CCGG	2 cut(s)	1165, 1180
HgaI	GACGC	2 cut(s)	135, 876
HhaI	GCGC	2 cut(s)	315, 979
Hin1I	GRCGYC	2 cut(s)	146, 887
Hin6I	GCGC	2 cut(s)	313, 977
HinP1I	GCGC	2 cut(s)	313, 977
HinfI	GANTC	3 cut(s)	83, 188, 619
HpaII	CCGG	2 cut(s)	1165, 1180
HphI	GGTGA	3 cut(s)	52, 858, 1141
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	7 cut(s)	88, 273, 453, 648, 671, 1147, 1238
Hpy188III	TCNNGA	1 cut(s)	1165
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	424, 764, 1171
HpyCH4III	ACNGT	3 cut(s)	694, 793, 1008
HpyCH4V	TGCA	5 cut(s)	11, 197, 485, 1211, 1248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 412, 884, 932
HpyF3I	CTNAG	6 cut(s)	243, 270, 303, 615, 645, 668
Hsp92I	GRCGYC	2 cut(s)	146, 887
HspAI	GCGC	2 cut(s)	313, 977
Kpn2I	TCCGGA	1 cut(s)	1164
Ksp22I	TGATCA	2 cut(s)	448, 1090
Kzo9I	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
LmnI	GCTCC	2 cut(s)	66, 596
Lsp1109I	GCAGC	3 cut(s)	181, 887, 935
LweI	GCATC	5 cut(s)	78, 340, 944, 959, 978
MaeI	CTAG	5 cut(s)	522, 704, 801, 1253, 1261
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	8 cut(s)	44, 369, 450, 455, 865, 1092, 1156, 1222
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
MboII	GAAGA	8 cut(s)	37, 163, 588, 692, 736, 845, 862, 1204
MfeI	CAATTG	1 cut(s)	1097
MflI	RGATCY	1 cut(s)	1220
MhlI	GDGCHC	3 cut(s)	468, 589, 714
MluCI	AATT	2 cut(s)	444, 1097
MlyI	GAGTC	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	1164
MseI	TTAA	1 cut(s)	1206
MslI	CAYNNNNRTG	3 cut(s)	179, 291, 375
MspI	CCGG	2 cut(s)	1165, 1180
MspR9I	CCNGG	2 cut(s)	1180, 1181
MunI	CAATTG	1 cut(s)	1097
Mva1269I	GAATGC	2 cut(s)	899, 1250
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	231, 412, 884, 932
NciI	CCSGG	2 cut(s)	1180, 1181
NcoI	CCATGG	5 cut(s)	609, 870, 894, 918, 930
NdeII	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
NlaIV	GGNNCC	2 cut(s)	550, 916
NmeAIII	GCCGAG	1 cut(s)	1005
NspI	RCATGY	1 cut(s)	234
PctI	GAATGC	2 cut(s)	899, 1250
PfeI	GAWTC	2 cut(s)	188, 619
PkrI	GCNGC	3 cut(s)	196, 877, 925
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	550, 916
PspPI	GGNCC	4 cut(s)	24, 548, 914, 1234
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	3 cut(s)	191, 310, 1006
PsuI	RGATCY	1 cut(s)	1220
RseI	CAYNNNNRTG	3 cut(s)	179, 291, 375
SaqAI	TTAA	1 cut(s)	1206
SatI	GCNGC	3 cut(s)	195, 876, 924
Sau3AI	GATC	8 cut(s)	42, 367, 448, 453, 863, 1090, 1154, 1220
Sau96I	GGNCC	4 cut(s)	24, 548, 914, 1234
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	1180, 1181
SduI	GDGCHC	3 cut(s)	468, 589, 714
SfaNI	GCATC	5 cut(s)	78, 340, 944, 959, 978
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	548, 1234
SmaI	CCCGGG	1 cut(s)	1181
SmiMI	CAYNNNNRTG	3 cut(s)	179, 291, 375
SmlI	CTYRAG	1 cut(s)	1224
SmoI	CTYRAG	1 cut(s)	1224
SrfI	GCCCGGGC	1 cut(s)	1181
Sse9I	AATT	2 cut(s)	444, 1097
SsiI	CCGC	3 cut(s)	152, 223, 589
SspMI	CTAG	5 cut(s)	522, 704, 801, 1253, 1261
StyD4I	CCNGG	2 cut(s)	1178, 1179
StyI	CCWWGG	6 cut(s)	609, 859, 870, 894, 918, 930
TaaI	ACNGT	3 cut(s)	694, 793, 1008
TaqI	TCGA	2 cut(s)	207, 468
TasI	AATT	2 cut(s)	444, 1097
TfiI	GAWTC	2 cut(s)	188, 619
Tru1I	TTAA	1 cut(s)	1206
Tru9I	TTAA	1 cut(s)	1206
TscAI	CASTG	3 cut(s)	129, 574, 1222
TseI	GCWGC	3 cut(s)	194, 875, 923
TspDTI	ATGAA	9 cut(s)	29, 132, 163, 325, 618, 644, 730, 977, 1205
TspGWI	ACGGA	1 cut(s)	385
TspMI	CCCGGG	1 cut(s)	1179
TspRI	CASTG	3 cut(s)	129, 574, 1222
VpaK11BI	GGWCC	2 cut(s)	548, 1234
XceI	RCATGY	1 cut(s)	234
XmaI	CCCGGG	1 cut(s)	1179
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	5 cut(s)	522, 704, 801, 1253, 1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.