Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001171

Physical Location & Seq

Genomic Coordinates Reverse (-)

9486887 .. 9488113

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTAGGAACAGTGAAGGCACAGTGGCTGTTCGCGACGGTGGTGTTGTTCTCGGTGGTGGTTTCGTGTATGGCGACGGATGAGGCGTCGGGGAATATGGAGTACGATTTCTATAGGAGCTCGTGTCCTCAGGCCGAGACCATTGTGAGGACGAAGATGGCTTGGATTTACCGGCAGCACAGGAACGTCTCGGCTCAGTTGCTGCGTCTATTTTTCAATGACTGCTTCATTAAGATCAAGGAGGAGCTCGAAAATGCTTGTCCAGGGGTGGTATCTTGTGCCGATGTACTTGCTCTTGCCACAAGAGATGGCATCATTCTGGCTGGTGGCCCATATTATCCAGTCTTGACAGGTAGAAAAGATAGCACACAGTCCTACTTTGATGAAGCACTGGAGGAGATTCCAAGGCCTGATGACAATATCACTCATATATTGCATCTCTTCTCAAGTAGAGGTTTCAGTGATAGAGAAACAGTTGCTCTTCTAGGTACTCACTGCCTCTCTATTCCTCATTCCAACTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

176

Amino Acids

19.58

Weight (kDa)

5.48

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	78 - 171	1.7e-31	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33870
fragaria_vesca	FvH4_3g15220 FvH4_3g15220 FvH4_3g15220 FvH4_3g15230 FvH4_3g15260
malus_domestica	MD05G1069000.v1.1 MD05G1224400.v1.1 MD10G1073400.v1.1 MD10G1206100.v1.1 MD17G1260000.v1.1
prunus_persica	Prupe.4G276800_v2.0.a1 Prupe.4G276900_v2.0.a1 Prupe.7G035800_v2.0.a1
pyrus_communis	pycom05g17670 pycom05g20700
rosa_chinensis	RchiOBHm_Chr4g0398441 RchiOBHm_Chr5g0025661 RchiOBHm_Chr5g0025671 RchiOBHm_Chr5g0025691 RchiOBHm_Chr6g0261501 RchiOBHm_Chr7g0193561 RchiOBHm_Chr7g0229481
rosa_laevigata	RLG00000032856 RLG00000032858
rosa_multiflora	Rmu_sc0000384.1_g000010 Rmu_sc0002083.1_g000030 Rmu_sc0002137.1_g000004 Rmu_sc0002137.1_g000005 Rmu_sc0018566.1_g000001 Rmu_sc0040363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053470 Rroxscaffold_1G00053510 Rroxscaffold_1G00054210 Rroxscaffold_1G00054240 Rroxscaffold_1G00054280 Rroxscaffold_2G00137360
rosa_rugosa	Rorug02G0089100 Rorug02G0139400 Rorug02G0319900 Rorug05G0087600 Rorug05G0087700 Rorug05G0087800 Rorug05G0087900
rosa_samantha	Rh1CG064900 Rh5AG179400 Rh5AG179500 Rh5AG179600 Rh5BG178500 Rh5BG178600 Rh5CG196100 Rh5CG196200 Rh5DG177700 Rh5DG177800 Rh6BG035000
rosa_wichuraiana	Rw5G016290 Rw5G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	3 cut(s)	104, 288, 490
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	120, 247
AluI	AGCT	2 cut(s)	120, 247
Alw21I	GWGCWC	2 cut(s)	122, 249
Alw26I	GTCTC	2 cut(s)	131, 193
AlwNI	CAGNNNCTG	2 cut(s)	28, 202
AoxI	GGCC	3 cut(s)	132, 328, 407
ApeKI	GCWGC	2 cut(s)	175, 202
AspS9I	GGNCC	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	122, 249
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	122, 249
BbvI	GCAGC	2 cut(s)	187, 189
BccI	CCATC	2 cut(s)	151, 302
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	131, 193
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	176, 203
BlsI	GCNGC	2 cut(s)	177, 204
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	321, 445
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	263, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	341, 396
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	263, 404
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	143, 209
BseNI	ACTGG	2 cut(s)	341, 396
BseRI	GAGGAG	2 cut(s)	257, 410
BseXI	GCAGC	2 cut(s)	187, 189
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	3 cut(s)	134, 330, 409
BsiHKAI	GWGCWC	2 cut(s)	122, 249
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	131, 193
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	134, 330, 409
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	122, 249
Bsp143I	GATC	1 cut(s)	234
Bsp68I	TCGCGA	1 cut(s)	35
BspANI	GGCC	3 cut(s)	134, 330, 409
BspCNI	CTCAG	2 cut(s)	142, 208
BspFNI	CGCG	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	341, 396
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	263, 404
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	5 cut(s)	13, 24, 40, 372, 475
Bst6I	CTCTTC	2 cut(s)	446, 486
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	129, 195
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	131, 193
BstMBI	GATC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	187, 189
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	134, 330, 409
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	5 cut(s)	18, 29, 389, 466, 493
BtuMI	TCGCGA	1 cut(s)	35
CaiI	CAGNNNCTG	2 cut(s)	28, 202
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	2 cut(s)	75, 194
Csp6I	GTAC	3 cut(s)	103, 287, 489
CviJI	RGCY	9 cut(s)	28, 120, 134, 161, 194, 247, 323, 330, 409
CviKI_1	RGCY	9 cut(s)	28, 120, 134, 161, 194, 247, 323, 330, 409
CviQI	GTAC	3 cut(s)	103, 287, 489
DdeI	CTNAG	2 cut(s)	129, 195
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	446, 486
EarI	CTCTTC	2 cut(s)	446, 486
Ecl136II	GAGCTC	2 cut(s)	120, 247
Eco130I	CCWWGG	1 cut(s)	404
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	122, 249
Eco31I	GGTCTC	1 cut(s)	131
Eco53kI	GAGCTC	2 cut(s)	120, 247
Eco81I	CCTNAGG	1 cut(s)	129
EcoICRI	GAGCTC	2 cut(s)	120, 247
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	122, 249
ErhI	CCWWGG	1 cut(s)	404
Esp3I	CGTCTC	1 cut(s)	193
FaiI	YATR	6 cut(s)	71, 98, 114, 334, 429, 431
Fnu4HI	GCNGC	2 cut(s)	176, 203
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	122, 249
Fsp4HI	GCNGC	2 cut(s)	176, 203
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	2 cut(s)	176, 203
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	134, 330, 409
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	2 cut(s)	75, 194
Hin1I	GRCGYC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	34, 346
Hpy99I	CGWCG	3 cut(s)	40, 79, 91
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	5 cut(s)	13, 24, 40, 372, 475
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	129, 195
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	117, 244
Lsp1109I	GCAGC	2 cut(s)	187, 189
LweI	GCATC	2 cut(s)	321, 445
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	186
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	3 cut(s)	166, 433, 473
MhlI	GDGCHC	2 cut(s)	122, 249
MnlI	CCTC	8 cut(s)	76, 138, 141, 235, 388, 446, 509, 519
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	35
NdeII	GATC	1 cut(s)	234
NmeAIII	GCCGAG	2 cut(s)	160, 170
NruI	TCGCGA	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 83
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	177, 204
Psp124BI	GAGCTC	2 cut(s)	122, 249
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	329
PstNI	CAGNNNCTG	2 cut(s)	28, 202
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	3 cut(s)	104, 288, 490
RsaNI	GTAC	3 cut(s)	103, 287, 489
SacI	GAGCTC	2 cut(s)	122, 249
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	176, 203
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	122, 249
SetI	ASST	6 cut(s)	122, 189, 249, 355, 457, 490
SfaNI	GCATC	2 cut(s)	321, 445
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SseBI	AGGCCT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	2 cut(s)	122, 249
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	5 cut(s)	13, 24, 40, 372, 475
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	5 cut(s)	18, 29, 396, 466, 500
TseI	GCWGC	2 cut(s)	175, 202
TspDTI	ATGAA	2 cut(s)	217, 399
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	5 cut(s)	18, 29, 396, 466, 500
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.